Wall clock time and date at job start Tue Mar 31 2020 17:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.48100 * 2 1 4 4 C 1.53092 * 109.47678 * 239.98065 * 2 1 3 5 5 C 1.53203 * 109.15279 * 297.61434 * 4 2 1 6 6 H 1.09002 * 109.53709 * 62.89730 * 5 4 2 7 7 N 1.46493 * 109.61382 * 183.11531 * 5 4 2 8 8 C 1.34776 * 119.99924 * 204.60877 * 7 5 4 9 9 O 1.21282 * 120.00307 * 359.97438 * 8 7 5 10 10 C 1.50708 * 120.00116 * 180.02562 * 8 7 5 11 11 C 1.50698 * 109.46732 * 179.97438 * 10 8 7 12 12 C 1.38303 * 119.93216 * 269.72089 * 11 10 8 13 13 C 1.38100 * 120.06911 * 179.72898 * 12 11 10 14 14 C 1.38887 * 119.92990 * 0.55261 * 13 12 11 15 15 O 1.35752 * 120.06809 * 179.74806 * 14 13 12 16 16 C 1.34822 * 116.99694 * 174.44236 * 15 14 13 17 17 H 1.08004 * 120.00437 * 5.05216 * 16 15 14 18 18 C 1.38656 * 120.00102 * 185.05605 * 16 15 14 19 19 N 1.31557 * 119.99587 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00173 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47268 * 89.99745 * 20 18 16 22 22 H 1.48502 * 109.46889 * 210.00096 * 20 18 16 23 23 H 1.48503 * 109.47097 * 329.99644 * 20 18 16 24 24 C 1.38881 * 119.86133 * 359.72243 * 14 13 12 25 25 C 1.38102 * 119.92824 * 0.02562 * 24 14 13 26 26 C 1.53174 * 109.04215 * 303.02853 * 5 4 2 27 27 C 1.53102 * 109.16334 * 56.97536 * 26 5 4 28 28 O 1.42892 * 109.41558 * 302.39376 * 27 26 5 29 29 H 1.09002 * 109.47071 * 59.98986 * 1 2 3 30 30 H 1.08997 * 109.46633 * 299.99952 * 1 2 3 31 31 H 1.08991 * 109.47335 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47292 * 60.00455 * 3 2 1 33 33 H 1.09003 * 109.46807 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47671 * 299.99996 * 3 2 1 35 35 H 1.08999 * 109.52450 * 57.53516 * 4 2 1 36 36 H 1.08996 * 109.52197 * 177.71807 * 4 2 1 37 37 H 0.96999 * 120.00657 * 24.60569 * 7 5 4 38 38 H 1.08993 * 109.46971 * 299.99403 * 10 8 7 39 39 H 1.08995 * 109.47055 * 59.99866 * 10 8 7 40 40 H 1.08003 * 119.96466 * 0.02562 * 12 11 10 41 41 H 1.07994 * 120.04040 * 180.27787 * 13 12 11 42 42 H 0.97000 * 119.99793 * 180.02562 * 19 18 16 43 43 H 1.07992 * 120.03740 * 179.97438 * 24 14 13 44 44 H 1.08008 * 119.96264 * 180.02562 * 25 24 14 45 45 H 1.09005 * 109.52150 * 297.07722 * 26 5 4 46 46 H 1.08995 * 109.57614 * 176.91523 * 26 5 4 47 47 H 1.09000 * 109.47928 * 182.40769 * 27 26 5 48 48 H 1.09005 * 109.48334 * 62.38417 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0405 -0.7221 -1.2497 5 6 1.5756 -2.1814 -1.2121 6 1 0.4866 -2.2179 -1.2408 7 7 2.1206 -2.9010 -2.3659 8 6 1.4955 -4.0007 -2.8309 9 8 0.4820 -4.3949 -2.2939 10 6 2.0565 -4.7413 -4.0176 11 6 1.1774 -5.9241 -4.3328 12 6 1.4333 -7.1500 -3.7458 13 6 0.6262 -8.2344 -4.0283 14 6 -0.4365 -8.0958 -4.9117 15 8 -1.2286 -9.1611 -5.1954 16 6 -2.3088 -8.9319 -5.9689 17 1 -2.4668 -7.9543 -6.3999 18 6 -3.2169 -9.9513 -6.2111 19 7 -3.0243 -11.1422 -5.6864 20 14 -4.7140 -9.6336 -7.2822 21 1 -4.3812 -9.9302 -8.6986 22 1 -5.8315 -10.5073 -6.8428 23 1 -5.1195 -8.2105 -7.1566 24 6 -0.6874 -6.8649 -5.5039 25 6 0.1203 -5.7830 -5.2133 26 6 2.0764 -2.8323 0.0809 27 6 1.5646 -2.0284 1.2791 28 8 2.0066 -0.6742 1.1664 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6771 1.9563 0.8900 33 1 3.1303 1.4421 -0.0005 34 1 1.6771 1.9564 -0.8900 35 1 1.6421 -0.2354 -2.1399 36 1 3.1297 -0.6872 -1.2711 37 1 2.9314 -2.5860 -2.7953 38 1 2.0912 -4.0743 -4.8788 39 1 3.0633 -5.0888 -3.7862 40 1 2.2623 -7.2581 -3.0620 41 1 0.8237 -9.1903 -3.5662 42 1 -3.6594 -11.8555 -5.8561 43 1 -1.5126 -6.7540 -6.1916 44 1 -0.0746 -4.8254 -5.6732 45 1 3.1664 -2.8400 0.0864 46 1 1.7045 -3.8549 0.1428 47 1 1.9531 -2.4621 2.2005 48 1 0.4750 -2.0549 1.2961 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153913187.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:50 Heat of formation + Delta-G solvation = -120.257728 kcal Electronic energy + Delta-G solvation = -28187.723120 eV Core-core repulsion = 24206.906441 eV Total energy + Delta-G solvation = -3980.816679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.50665 -40.83636 -40.07805 -38.22222 -36.21459 -34.56545 -34.40474 -33.26968 -32.11935 -31.76986 -29.17788 -28.26073 -28.06043 -26.96919 -24.85437 -23.63835 -23.27733 -22.18266 -21.31481 -20.22569 -19.84376 -18.86231 -18.07236 -17.55902 -17.13523 -16.65361 -16.49191 -16.26161 -16.06193 -15.80633 -15.61330 -15.49293 -15.19923 -15.05699 -14.70045 -14.45899 -14.39463 -14.10328 -14.01018 -13.60366 -13.38136 -12.98677 -12.97005 -12.88636 -12.77754 -12.68103 -12.47465 -12.34179 -12.26323 -12.24346 -12.13157 -12.11847 -11.94740 -11.23683 -11.18204 -10.92321 -10.77246 -10.43790 -10.04441 -9.76587 -8.89985 -8.47900 -6.16049 0.61196 0.67225 1.33061 1.42861 1.51225 1.74399 2.16832 2.22138 2.78316 2.85130 3.17145 3.52320 3.59894 3.77647 3.82295 3.87009 4.03209 4.04002 4.05865 4.14618 4.19770 4.25646 4.37008 4.47700 4.49827 4.59398 4.60606 4.70250 4.72325 4.79372 4.80464 4.83997 4.88618 4.99568 5.03008 5.06626 5.07436 5.10650 5.14378 5.30410 5.32255 5.38612 5.54080 5.56563 5.71435 5.77969 6.02364 6.23158 6.29257 6.65808 6.96547 7.38819 7.78118 8.75577 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020846 B = 0.002068 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.831586 B =13533.979458 C =13934.223837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.109 3.891 3 C -0.134 4.134 4 C -0.139 4.139 5 C 0.142 3.858 6 H 0.065 0.935 7 N -0.714 5.714 8 C 0.511 3.489 9 O -0.579 6.579 10 C -0.078 4.078 11 C -0.144 4.144 12 C -0.058 4.058 13 C -0.207 4.207 14 C 0.111 3.889 15 O -0.234 6.234 16 C -0.414 4.414 17 H 0.100 0.900 18 C -0.026 4.026 19 N -0.921 5.921 20 Si 1.020 2.980 21 H -0.260 1.260 22 H -0.271 1.271 23 H -0.255 1.255 24 C -0.244 4.244 25 C -0.060 4.060 26 C -0.161 4.161 27 C 0.062 3.938 28 O -0.385 6.385 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.418 0.582 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.146 0.854 41 H 0.111 0.889 42 H 0.273 0.727 43 H 0.117 0.883 44 H 0.138 0.862 45 H 0.082 0.918 46 H 0.056 0.944 47 H 0.106 0.894 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.702 27.401 8.217 32.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.069 3.931 3 C -0.192 4.192 4 C -0.177 4.177 5 C 0.037 3.963 6 H 0.083 0.917 7 N -0.367 5.367 8 C 0.299 3.701 9 O -0.458 6.458 10 C -0.117 4.117 11 C -0.146 4.146 12 C -0.076 4.076 13 C -0.226 4.226 14 C 0.061 3.939 15 O -0.141 6.141 16 C -0.490 4.490 17 H 0.117 0.883 18 C -0.223 4.223 19 N -0.560 5.560 20 Si 0.839 3.161 21 H -0.185 1.185 22 H -0.195 1.195 23 H -0.179 1.179 24 C -0.263 4.263 25 C -0.078 4.078 26 C -0.200 4.200 27 C -0.016 4.016 28 O -0.305 6.305 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.255 0.745 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.164 0.836 41 H 0.129 0.871 42 H 0.082 0.918 43 H 0.135 0.865 44 H 0.156 0.844 45 H 0.101 0.899 46 H 0.075 0.925 47 H 0.124 0.876 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 14.028 26.791 8.797 31.495 hybrid contribution -0.951 -0.829 -0.606 1.400 sum 13.077 25.962 8.191 30.201 Atomic orbital electron populations 1.22506 0.95795 1.02234 1.03572 1.21622 0.93196 0.93731 0.84538 1.21767 1.02154 0.91828 1.03406 1.22440 1.03070 0.92871 0.99363 1.20960 0.98411 0.91808 0.85148 0.91730 1.45932 1.30187 1.28009 1.32591 1.21205 0.83425 0.80440 0.85050 1.90754 1.26805 1.67442 1.60796 1.20540 0.99752 0.94542 0.96868 1.19266 0.99280 0.94865 1.01146 1.20874 0.98012 0.91292 0.97437 1.20443 0.98255 1.00845 1.03077 1.19944 0.91916 0.87924 0.94133 1.83935 1.35272 1.31392 1.63469 1.21813 0.99869 0.99782 1.27527 0.88288 1.26632 1.01983 0.94150 0.99503 1.70191 1.38102 1.03017 1.44660 0.84570 0.75013 0.79105 0.77386 1.18453 1.19519 1.17897 1.21229 1.04590 0.93747 1.06767 1.20938 0.93211 0.97244 0.96456 1.22529 1.02422 0.99667 0.95342 1.22564 0.98856 0.81745 0.98392 1.87958 1.73818 1.24741 1.43945 0.90214 0.91581 0.93210 0.91896 0.91362 0.89353 0.88871 0.88997 0.74493 0.85265 0.85174 0.83643 0.87076 0.91842 0.86522 0.84379 0.89911 0.92482 0.87621 0.93224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 7.93 71.98 0.57 -1.94 16 2 C 0.11 1.39 1.11 -10.76 -0.01 1.38 16 3 C -0.13 -1.21 8.85 71.98 0.64 -0.57 16 4 C -0.14 -1.52 4.40 30.69 0.14 -1.39 16 5 C 0.14 2.38 2.23 45.12 0.10 2.48 16 6 H 0.06 1.47 6.06 -2.39 -0.01 1.46 16 7 N -0.71 -10.84 5.09 -441.93 -2.25 -13.09 16 8 C 0.51 12.02 7.79 87.66 0.68 12.71 16 9 O -0.58 -20.68 15.70 -3.03 -0.05 -20.73 16 10 C -0.08 -1.50 5.83 29.10 0.17 -1.33 16 11 C -0.14 -4.61 4.38 -19.83 -0.09 -4.70 16 12 C -0.06 -2.07 9.69 22.25 0.22 -1.85 16 13 C -0.21 -9.44 9.99 22.39 0.22 -9.21 16 14 C 0.11 5.88 6.65 22.58 0.15 6.03 16 15 O -0.23 -14.77 9.76 -22.69 -0.22 -14.99 16 16 C -0.41 -25.15 9.49 67.92 0.64 -24.50 16 17 H 0.10 5.55 5.20 -2.91 -0.02 5.54 16 18 C -0.03 -1.50 5.49 84.83 0.47 -1.04 16 19 N -0.92 -58.28 13.67 21.61 0.30 -57.99 16 20 Si 1.02 44.33 29.55 68.60 2.03 46.35 16 21 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 24 C -0.24 -11.33 9.17 22.39 0.21 -11.12 16 25 C -0.06 -2.20 9.69 22.25 0.22 -1.99 16 26 C -0.16 -2.81 5.71 30.69 0.18 -2.64 16 27 C 0.06 1.02 6.51 72.02 0.47 1.49 16 28 O -0.38 -6.52 10.24 -148.98 -1.52 -8.05 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.85 4.97 -2.39 -0.01 0.84 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 37 H 0.42 3.11 8.61 -92.71 -0.80 2.31 16 38 H 0.13 1.67 8.08 -2.39 -0.02 1.65 16 39 H 0.13 1.67 8.08 -2.39 -0.02 1.65 16 40 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 41 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 42 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 43 H 0.12 5.49 5.64 -2.91 -0.02 5.47 16 44 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 45 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 46 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 47 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.05 0.88 6.34 -2.38 -0.02 0.87 16 Total: -1.00 -83.62 387.14 3.42 -80.20 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.18 Total: 26.50 kcal Atomic # 6 Polarization: -43.16 SS G_CDS: 4.96 Total: -38.20 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: -1.95 Total: -71.08 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -1.79 Total: -43.77 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -83.62 3.42 -80.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153913187.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.061 kcal (2) G-P(sol) polarization free energy of solvation -83.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds