Wall clock time and date at job start Tue Mar 31 2020 18:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 116.99923 * 2 1 4 4 O 1.20824 * 119.99942 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99930 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.46855 * 179.97438 * 5 3 2 7 7 C 1.37095 * 119.99920 * 269.99444 * 6 5 3 8 8 H 1.08000 * 119.99979 * 202.99494 * 7 6 5 9 9 C 1.38950 * 120.00021 * 23.00233 * 7 6 5 10 10 N 1.31408 * 119.99810 * 351.25388 * 9 7 6 11 11 Si 1.86797 * 119.99700 * 171.25422 * 9 7 6 12 12 H 1.48498 * 109.47365 * 60.00418 * 11 9 7 13 13 H 1.48508 * 109.46813 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47208 * 299.99805 * 11 9 7 15 15 C 1.34780 * 119.99742 * 90.00262 * 6 5 3 16 16 O 1.21294 * 120.00052 * 5.01245 * 15 6 5 17 17 C 1.50704 * 119.99804 * 185.01514 * 15 6 5 18 18 C 1.53001 * 109.47049 * 174.79199 * 17 15 6 19 19 C 1.52999 * 109.46892 * 179.97438 * 18 17 15 20 20 C 1.52993 * 109.47361 * 60.00241 * 19 18 17 21 21 C 1.53006 * 109.47269 * 299.99988 * 19 18 17 22 22 C 1.50703 * 109.46873 * 180.02562 * 19 18 17 23 23 C 1.38234 * 119.99713 * 179.97438 * 22 19 18 24 24 C 1.38232 * 119.99886 * 179.97438 * 23 22 19 25 25 C 1.38238 * 120.00226 * 359.95495 * 24 23 22 26 26 C 1.38239 * 119.99552 * 0.27814 * 25 24 23 27 27 C 1.38231 * 119.99991 * 359.97438 * 22 19 18 28 28 H 1.08999 * 109.47161 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47007 * 299.99971 * 1 2 3 30 30 H 1.08997 * 109.47138 * 59.99987 * 1 2 3 31 31 H 1.09003 * 109.47333 * 59.99728 * 5 3 2 32 32 H 1.09001 * 109.46783 * 299.99579 * 5 3 2 33 33 H 0.97006 * 119.99619 * 185.00727 * 10 9 7 34 34 H 1.08997 * 109.46789 * 54.79153 * 17 15 6 35 35 H 1.09002 * 109.46919 * 294.79850 * 17 15 6 36 36 H 1.09001 * 109.46725 * 59.99961 * 18 17 15 37 37 H 1.08997 * 109.47331 * 300.00128 * 18 17 15 38 38 H 1.08999 * 109.47672 * 180.02562 * 20 19 18 39 39 H 1.09008 * 109.47410 * 300.00066 * 20 19 18 40 40 H 1.09005 * 109.47207 * 59.99629 * 20 19 18 41 41 H 1.09001 * 109.47272 * 300.00548 * 21 19 18 42 42 H 1.09009 * 109.46480 * 59.99930 * 21 19 18 43 43 H 1.08990 * 109.47210 * 179.97438 * 21 19 18 44 44 H 1.07998 * 120.00449 * 359.97395 * 23 22 19 45 45 H 1.07997 * 120.00124 * 179.97438 * 24 23 22 46 46 H 1.07994 * 120.00495 * 180.02562 * 25 24 23 47 47 H 1.08002 * 120.00163 * 179.71938 * 26 25 24 48 48 H 1.07997 * 120.00059 * 359.97438 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.1757 3.3368 -1.1886 8 1 4.8140 4.2072 -1.2262 9 6 3.5509 2.8830 -2.3438 10 7 2.9159 1.7326 -2.3387 11 14 3.6138 3.9084 -3.9039 12 1 5.0283 4.1009 -4.3131 13 1 2.8769 3.2081 -4.9865 14 1 2.9867 5.2308 -3.6528 15 6 4.1732 3.3263 1.1659 16 8 4.0907 2.7222 2.2145 17 6 4.4898 4.7997 1.1680 18 6 4.5305 5.3106 2.6096 19 6 4.8525 6.8063 2.6117 20 6 3.7734 7.5614 1.8334 21 6 6.2131 7.0360 1.9505 22 6 4.8933 7.3093 4.0317 23 6 5.1683 8.6400 4.2858 24 6 5.2051 9.1016 5.5883 25 6 4.9660 8.2327 6.6366 26 6 4.6958 6.9010 6.3826 27 6 4.6556 6.4402 5.0799 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.9558 0.7809 -0.8908 32 1 3.9564 0.7806 0.8892 33 1 2.5423 1.3812 -3.1621 34 1 3.7206 5.3373 0.6136 35 1 5.4589 4.9637 0.6967 36 1 5.2997 4.7728 3.1640 37 1 3.5614 5.1465 3.0808 38 1 4.0030 8.6269 1.8344 39 1 3.7442 7.1975 0.8062 40 1 2.8040 7.3978 2.3043 41 1 6.9820 6.4979 2.5050 42 1 6.1840 6.6719 0.9234 43 1 6.4423 8.1015 1.9516 44 1 5.3544 9.3190 3.4669 45 1 5.4204 10.1410 5.7869 46 1 4.9944 8.5934 7.6541 47 1 4.5134 6.2212 7.2017 48 1 4.4403 5.4007 4.8813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155454919.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:43 Heat of formation + Delta-G solvation = -97.009750 kcal Electronic energy + Delta-G solvation = -29474.115977 eV Core-core repulsion = 25494.307406 eV Total energy + Delta-G solvation = -3979.808571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.91653 -39.36453 -38.30161 -36.50430 -35.37227 -34.52630 -31.55005 -31.27978 -30.73718 -29.26389 -28.25090 -27.09859 -26.33058 -25.12678 -24.09618 -22.49927 -21.78526 -20.19973 -19.24858 -18.55641 -17.36762 -16.65209 -16.49367 -16.14939 -15.45658 -15.21603 -14.97294 -14.82084 -14.70716 -14.33675 -14.25592 -13.72616 -13.63179 -13.43106 -13.26551 -12.89439 -12.61649 -12.36977 -12.32597 -12.03515 -12.01304 -11.54526 -11.51727 -11.27182 -11.25413 -11.19253 -11.13348 -10.87942 -10.79970 -10.56304 -10.49109 -10.24708 -10.14037 -10.08285 -9.80242 -9.50288 -8.99348 -8.84024 -8.59858 -8.54301 -7.93778 -6.44440 -4.07098 1.44326 1.47759 3.08329 3.16989 3.17816 3.52360 3.75332 3.86579 4.03089 4.10980 4.60438 4.77266 4.92785 5.02304 5.03202 5.17868 5.23389 5.23553 5.44510 5.56916 5.63003 5.71476 5.77962 5.79052 5.86823 5.87219 5.95946 5.97606 6.02954 6.12988 6.14212 6.18272 6.23407 6.28411 6.34468 6.38513 6.45377 6.54811 6.58981 6.66867 6.74769 6.78199 6.85482 6.94120 7.09411 7.31145 7.51345 7.66357 8.25458 8.98091 9.15808 9.38461 9.78625 10.57184 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014021 B = 0.003320 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.502387 B = 8431.943083 C = 9770.638314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.373 6.373 3 C 0.491 3.509 4 O -0.515 6.515 5 C 0.153 3.847 6 N -0.436 5.436 7 C -0.324 4.324 8 H 0.102 0.898 9 C 0.042 3.958 10 N -0.886 5.886 11 Si 0.931 3.069 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.471 3.529 16 O -0.605 6.605 17 C -0.120 4.120 18 C -0.091 4.091 19 C -0.028 4.028 20 C -0.141 4.141 21 C -0.140 4.140 22 C -0.060 4.060 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.132 4.132 26 C -0.120 4.120 27 C -0.118 4.118 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.137 0.863 32 H 0.076 0.924 33 H 0.273 0.727 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.119 0.881 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.119 0.881 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.064 8.004 7.619 11.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.291 6.291 3 C 0.333 3.667 4 O -0.401 6.401 5 C 0.028 3.972 6 N -0.155 5.155 7 C -0.451 4.451 8 H 0.119 0.881 9 C -0.161 4.161 10 N -0.526 5.526 11 Si 0.758 3.242 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.197 1.197 15 C 0.261 3.739 16 O -0.491 6.491 17 C -0.160 4.160 18 C -0.128 4.128 19 C -0.028 4.028 20 C -0.198 4.198 21 C -0.197 4.197 22 C -0.060 4.060 23 C -0.136 4.136 24 C -0.142 4.142 25 C -0.151 4.151 26 C -0.138 4.138 27 C -0.136 4.136 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.155 0.845 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.137 0.863 45 H 0.134 0.866 46 H 0.134 0.866 47 H 0.137 0.863 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.635 7.921 7.969 11.541 hybrid contribution -0.440 0.519 -1.057 1.257 sum 2.195 8.440 6.913 11.128 Atomic orbital electron populations 1.22909 0.79025 1.01724 1.01441 1.86468 1.21382 1.35586 1.85637 1.24015 0.92398 0.80371 0.69926 1.90494 1.66739 1.36480 1.46417 1.20632 0.86822 0.85868 1.03888 1.43351 1.58299 1.08373 1.05450 1.19605 1.27519 1.12929 0.85090 0.88070 1.25284 0.94337 0.96300 1.00185 1.69597 1.36491 1.17869 1.28624 0.85925 0.78345 0.79823 0.80123 1.19854 1.20897 1.19742 1.20364 0.81128 0.89205 0.83172 1.90521 1.57978 1.68934 1.31660 1.21494 1.03093 0.94067 0.97311 1.21447 1.02459 0.92184 0.96741 1.19579 0.96240 0.96094 0.90901 1.21951 0.98042 0.99152 1.00651 1.21942 0.95544 1.01109 1.01080 1.19934 0.97629 0.93379 0.95065 1.20979 1.00730 0.95341 0.96540 1.21068 1.00897 0.99356 0.92895 1.21085 1.01290 0.93926 0.98752 1.21172 1.00113 0.95685 0.96840 1.21395 0.99371 1.00672 0.92145 0.89658 0.93280 0.92824 0.84523 0.90649 0.91575 0.89303 0.90057 0.91323 0.91495 0.92984 0.91327 0.92558 0.92583 0.91466 0.92946 0.86337 0.86561 0.86633 0.86335 0.84978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.84 16 2 O -0.37 -8.23 10.57 -39.25 -0.41 -8.65 16 3 C 0.49 12.32 5.92 36.01 0.21 12.53 16 4 O -0.52 -14.33 15.94 -18.75 -0.30 -14.63 16 5 C 0.15 3.74 5.29 -5.19 -0.03 3.71 16 6 N -0.44 -10.84 2.11 -116.09 -0.25 -11.09 16 7 C -0.32 -7.94 9.00 -14.93 -0.13 -8.07 16 8 H 0.10 2.28 6.72 -52.49 -0.35 1.93 16 9 C 0.04 1.03 5.41 -17.47 -0.09 0.94 16 10 N -0.89 -22.53 8.21 55.50 0.46 -22.08 16 11 Si 0.93 19.36 29.56 -169.99 -5.03 14.33 16 12 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 13 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 14 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 15 C 0.47 11.22 7.62 -10.98 -0.08 11.14 16 16 O -0.60 -15.59 15.54 5.55 0.09 -15.50 16 17 C -0.12 -2.28 3.54 -27.88 -0.10 -2.38 16 18 C -0.09 -1.51 2.23 -26.73 -0.06 -1.57 16 19 C -0.03 -0.38 0.63 -155.66 -0.10 -0.48 16 20 C -0.14 -1.86 7.93 37.15 0.29 -1.57 16 21 C -0.14 -1.73 7.93 37.16 0.29 -1.43 16 22 C -0.06 -0.80 4.76 -104.62 -0.50 -1.30 16 23 C -0.12 -1.40 8.71 -39.58 -0.34 -1.74 16 24 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 25 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 26 C -0.12 -1.45 10.05 -39.58 -0.40 -1.84 16 27 C -0.12 -1.62 8.98 -39.58 -0.36 -1.97 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 30 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 31 H 0.14 3.34 6.28 -51.93 -0.33 3.02 16 32 H 0.08 1.76 7.36 -51.93 -0.38 1.38 16 33 H 0.27 6.73 8.32 -40.82 -0.34 6.39 16 34 H 0.09 1.72 6.32 -51.93 -0.33 1.39 16 35 H 0.08 1.41 6.03 -51.93 -0.31 1.10 16 36 H 0.07 1.19 7.41 -51.93 -0.39 0.80 16 37 H 0.07 1.22 7.51 -51.93 -0.39 0.83 16 38 H 0.05 0.59 7.39 -51.93 -0.38 0.21 16 39 H 0.07 0.94 6.43 -51.92 -0.33 0.60 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.84 6.43 -51.92 -0.33 0.50 16 43 H 0.05 0.57 7.39 -51.93 -0.38 0.18 16 44 H 0.12 1.22 7.10 -52.49 -0.37 0.85 16 45 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 47 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 48 H 0.13 1.91 5.90 -52.49 -0.31 1.60 16 LS Contribution 383.36 15.07 5.78 5.78 Total: -1.00 -30.60 383.36 -7.90 -38.50 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -7.11 Total: 9.14 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -1.12 Total: 4.20 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.21 Total: -33.17 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -0.63 Total: -38.78 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.60 -7.90 -38.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155454919.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.512 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds