Wall clock time and date at job start Tue Mar 31 2020 18:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 116.99923 * 2 1 4 4 O 1.20824 * 119.99942 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99930 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.46855 * 179.97438 * 5 3 2 7 7 C 1.37095 * 119.99920 * 269.99444 * 6 5 3 8 8 H 1.08000 * 119.99979 * 202.99494 * 7 6 5 9 9 C 1.38950 * 120.00021 * 23.00233 * 7 6 5 10 10 N 1.31408 * 119.99810 * 351.25388 * 9 7 6 11 11 Si 1.86797 * 119.99700 * 171.25422 * 9 7 6 12 12 H 1.48498 * 109.47365 * 60.00418 * 11 9 7 13 13 H 1.48508 * 109.46813 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47208 * 299.99805 * 11 9 7 15 15 C 1.34780 * 119.99742 * 90.00262 * 6 5 3 16 16 O 1.21294 * 120.00052 * 5.01245 * 15 6 5 17 17 C 1.50704 * 119.99804 * 185.01514 * 15 6 5 18 18 C 1.53001 * 109.47049 * 174.79199 * 17 15 6 19 19 C 1.52999 * 109.46892 * 179.97438 * 18 17 15 20 20 C 1.52993 * 109.47361 * 60.00241 * 19 18 17 21 21 C 1.53006 * 109.47269 * 299.99988 * 19 18 17 22 22 C 1.50703 * 109.46873 * 180.02562 * 19 18 17 23 23 C 1.38234 * 119.99713 * 179.97438 * 22 19 18 24 24 C 1.38232 * 119.99886 * 179.97438 * 23 22 19 25 25 C 1.38238 * 120.00226 * 359.95495 * 24 23 22 26 26 C 1.38239 * 119.99552 * 0.27814 * 25 24 23 27 27 C 1.38231 * 119.99991 * 359.97438 * 22 19 18 28 28 H 1.08999 * 109.47161 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47007 * 299.99971 * 1 2 3 30 30 H 1.08997 * 109.47138 * 59.99987 * 1 2 3 31 31 H 1.09003 * 109.47333 * 59.99728 * 5 3 2 32 32 H 1.09001 * 109.46783 * 299.99579 * 5 3 2 33 33 H 0.97006 * 119.99619 * 185.00727 * 10 9 7 34 34 H 1.08997 * 109.46789 * 54.79153 * 17 15 6 35 35 H 1.09002 * 109.46919 * 294.79850 * 17 15 6 36 36 H 1.09001 * 109.46725 * 59.99961 * 18 17 15 37 37 H 1.08997 * 109.47331 * 300.00128 * 18 17 15 38 38 H 1.08999 * 109.47672 * 180.02562 * 20 19 18 39 39 H 1.09008 * 109.47410 * 300.00066 * 20 19 18 40 40 H 1.09005 * 109.47207 * 59.99629 * 20 19 18 41 41 H 1.09001 * 109.47272 * 300.00548 * 21 19 18 42 42 H 1.09009 * 109.46480 * 59.99930 * 21 19 18 43 43 H 1.08990 * 109.47210 * 179.97438 * 21 19 18 44 44 H 1.07998 * 120.00449 * 359.97395 * 23 22 19 45 45 H 1.07997 * 120.00124 * 179.97438 * 24 23 22 46 46 H 1.07994 * 120.00495 * 180.02562 * 25 24 23 47 47 H 1.08002 * 120.00163 * 179.71938 * 26 25 24 48 48 H 1.07997 * 120.00059 * 359.97438 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.1757 3.3368 -1.1886 8 1 4.8140 4.2072 -1.2262 9 6 3.5509 2.8830 -2.3438 10 7 2.9159 1.7326 -2.3387 11 14 3.6138 3.9084 -3.9039 12 1 5.0283 4.1009 -4.3131 13 1 2.8769 3.2081 -4.9865 14 1 2.9867 5.2308 -3.6528 15 6 4.1732 3.3263 1.1659 16 8 4.0907 2.7222 2.2145 17 6 4.4898 4.7997 1.1680 18 6 4.5305 5.3106 2.6096 19 6 4.8525 6.8063 2.6117 20 6 3.7734 7.5614 1.8334 21 6 6.2131 7.0360 1.9505 22 6 4.8933 7.3093 4.0317 23 6 5.1683 8.6400 4.2858 24 6 5.2051 9.1016 5.5883 25 6 4.9660 8.2327 6.6366 26 6 4.6958 6.9010 6.3826 27 6 4.6556 6.4402 5.0799 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.9558 0.7809 -0.8908 32 1 3.9564 0.7806 0.8892 33 1 2.5423 1.3812 -3.1621 34 1 3.7206 5.3373 0.6136 35 1 5.4589 4.9637 0.6967 36 1 5.2997 4.7728 3.1640 37 1 3.5614 5.1465 3.0808 38 1 4.0030 8.6269 1.8344 39 1 3.7442 7.1975 0.8062 40 1 2.8040 7.3978 2.3043 41 1 6.9820 6.4979 2.5050 42 1 6.1840 6.6719 0.9234 43 1 6.4423 8.1015 1.9516 44 1 5.3544 9.3190 3.4669 45 1 5.4204 10.1410 5.7869 46 1 4.9944 8.5934 7.6541 47 1 4.5134 6.2212 7.2017 48 1 4.4403 5.4007 4.8813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155454919.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:41 Heat of formation + Delta-G solvation = -111.279467 kcal Electronic energy + Delta-G solvation = -29474.734758 eV Core-core repulsion = 25494.307406 eV Total energy + Delta-G solvation = -3980.427352 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.39840 -40.86391 -40.03492 -37.72361 -37.17569 -36.46734 -33.45178 -32.55376 -31.75724 -30.53387 -29.79409 -28.11461 -27.93208 -26.82941 -25.57001 -23.51436 -22.89177 -21.95629 -21.08032 -19.72964 -18.94747 -18.48797 -18.07831 -17.63093 -17.29297 -16.95271 -16.27834 -16.19174 -16.08484 -15.84311 -15.65424 -15.04758 -14.90937 -14.51967 -14.35795 -14.29519 -14.24174 -13.95407 -13.80060 -13.28533 -13.18354 -13.12899 -12.97554 -12.89491 -12.68557 -12.61369 -12.44869 -12.23334 -12.18085 -12.10438 -12.02508 -11.58884 -11.56230 -11.47686 -11.31894 -11.24777 -10.91191 -10.44525 -9.87116 -9.75231 -9.52233 -8.31426 -5.99671 0.53417 0.56309 1.42116 1.47696 1.56600 1.69765 1.84795 2.22940 2.35789 2.93029 2.95186 3.15863 3.69507 3.80449 4.05122 4.19135 4.22170 4.25589 4.29270 4.33867 4.37297 4.38749 4.43960 4.48575 4.51198 4.60272 4.68897 4.71500 4.74215 4.85297 4.87557 4.96653 5.03677 5.06306 5.13136 5.14183 5.23413 5.25520 5.32342 5.41452 5.44375 5.52015 5.64705 5.67588 5.69734 5.77588 5.84568 6.19992 6.35276 7.08181 7.22222 7.49563 7.89717 8.69995 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014021 B = 0.003320 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.502387 B = 8431.943083 C = 9770.638314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.492 3.508 4 O -0.550 6.550 5 C 0.150 3.850 6 N -0.446 5.446 7 C -0.340 4.340 8 H 0.119 0.881 9 C -0.002 4.002 10 N -0.908 5.908 11 Si 0.996 3.004 12 H -0.255 1.255 13 H -0.289 1.289 14 H -0.272 1.272 15 C 0.455 3.545 16 O -0.634 6.634 17 C -0.109 4.109 18 C -0.078 4.078 19 C -0.021 4.021 20 C -0.139 4.139 21 C -0.137 4.137 22 C -0.074 4.074 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.133 4.133 26 C -0.130 4.130 27 C -0.144 4.144 28 H 0.134 0.866 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.134 0.866 32 H 0.077 0.923 33 H 0.271 0.729 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.056 0.944 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.042 0.958 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.138 0.862 45 H 0.146 0.854 46 H 0.142 0.858 47 H 0.130 0.870 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.778 10.340 7.393 13.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.292 6.292 3 C 0.336 3.664 4 O -0.439 6.439 5 C 0.025 3.975 6 N -0.165 5.165 7 C -0.467 4.467 8 H 0.136 0.864 9 C -0.202 4.202 10 N -0.548 5.548 11 Si 0.819 3.181 12 H -0.179 1.179 13 H -0.215 1.215 14 H -0.198 1.198 15 C 0.247 3.753 16 O -0.522 6.522 17 C -0.148 4.148 18 C -0.116 4.116 19 C -0.021 4.021 20 C -0.196 4.196 21 C -0.194 4.194 22 C -0.074 4.074 23 C -0.139 4.139 24 C -0.140 4.140 25 C -0.151 4.151 26 C -0.148 4.148 27 C -0.162 4.162 28 H 0.152 0.848 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.151 0.849 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.156 0.844 45 H 0.164 0.836 46 H 0.160 0.840 47 H 0.148 0.852 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.362 10.237 7.747 13.270 hybrid contribution -0.732 -0.310 -0.906 1.205 sum 2.630 9.927 6.841 12.339 Atomic orbital electron populations 1.23280 0.76384 1.04821 1.01071 1.86431 1.23939 1.33888 1.84977 1.24072 0.92639 0.80631 0.69019 1.90460 1.67510 1.37707 1.48236 1.20641 0.86902 0.86311 1.03658 1.43614 1.58232 1.08568 1.06104 1.20048 1.28116 1.13495 0.85049 0.86381 1.26148 0.93872 0.97094 1.03081 1.69702 1.37037 1.19073 1.29033 0.84933 0.79059 0.77867 0.76191 1.17937 1.21486 1.19772 1.21231 0.80541 0.91022 0.82521 1.90487 1.59182 1.69997 1.32536 1.21477 1.03804 0.90610 0.98899 1.21310 1.00753 0.94758 0.94742 1.19481 0.97257 0.93425 0.91896 1.21939 0.97204 1.00597 0.99875 1.21931 0.94324 1.02595 1.00591 1.19937 0.98770 0.94324 0.94371 1.21203 1.00274 0.94629 0.97825 1.21459 0.99487 1.00773 0.92323 1.21435 1.00111 0.93234 1.00336 1.21380 1.00138 0.96876 0.96410 1.21374 1.01273 1.00023 0.93523 0.84827 0.93188 0.93699 0.84858 0.90501 0.91875 0.89463 0.88102 0.92544 0.93944 0.90501 0.91925 0.93915 0.93022 0.91576 0.90652 0.84426 0.83615 0.84004 0.85243 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.32 10.56 113.37 1.20 2.52 16 2 O -0.38 -16.68 10.57 -51.41 -0.54 -17.22 16 3 C 0.49 25.36 5.92 71.24 0.42 25.78 16 4 O -0.55 -31.44 15.94 21.97 0.35 -31.09 16 5 C 0.15 7.57 5.29 85.63 0.45 8.03 16 6 N -0.45 -22.76 2.11 -639.57 -1.35 -24.11 16 7 C -0.34 -16.71 9.00 84.04 0.76 -15.95 16 8 H 0.12 5.22 6.72 -2.91 -0.02 5.20 16 9 C 0.00 -0.09 5.41 84.93 0.46 0.37 16 10 N -0.91 -46.69 8.21 21.66 0.18 -46.51 16 11 Si 1.00 39.07 29.56 68.60 2.03 41.10 16 12 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16 13 H -0.29 -11.52 7.11 99.48 0.71 -10.81 16 14 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 15 C 0.46 22.39 7.62 87.66 0.67 23.06 16 16 O -0.63 -34.15 15.54 -3.07 -0.05 -34.20 16 17 C -0.11 -4.19 3.54 29.85 0.11 -4.09 16 18 C -0.08 -2.70 2.23 30.59 0.07 -2.63 16 19 C -0.02 -0.55 0.63 -52.93 -0.03 -0.58 16 20 C -0.14 -3.53 7.93 71.98 0.57 -2.96 16 21 C -0.14 -3.16 7.93 71.98 0.57 -2.59 16 22 C -0.07 -1.93 4.76 -19.87 -0.09 -2.02 16 23 C -0.12 -2.57 8.71 22.27 0.19 -2.38 16 24 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 25 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 26 C -0.13 -3.07 10.05 22.27 0.22 -2.84 16 27 C -0.14 -4.05 8.98 22.27 0.20 -3.85 16 28 H 0.13 3.31 8.14 -2.39 -0.02 3.29 16 29 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 30 H 0.04 1.63 8.13 -2.39 -0.02 1.61 16 31 H 0.13 6.74 6.28 -2.39 -0.01 6.72 16 32 H 0.08 3.75 7.36 -2.39 -0.02 3.73 16 33 H 0.27 13.48 8.32 -92.70 -0.77 12.71 16 34 H 0.09 3.41 6.32 -2.39 -0.02 3.39 16 35 H 0.10 3.47 6.03 -2.39 -0.01 3.45 16 36 H 0.06 2.06 7.41 -2.39 -0.02 2.05 16 37 H 0.04 1.65 7.51 -2.39 -0.02 1.63 16 38 H 0.08 1.55 7.39 -2.39 -0.02 1.53 16 39 H 0.06 1.65 6.43 -2.38 -0.02 1.63 16 40 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 1.52 6.43 -2.38 -0.02 1.51 16 43 H 0.07 1.39 7.39 -2.39 -0.02 1.37 16 44 H 0.14 2.33 7.10 -2.91 -0.02 2.30 16 45 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 46 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 47 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 48 H 0.11 3.48 5.90 -2.91 -0.02 3.46 16 Total: -1.00 -67.62 383.36 7.78 -59.84 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: 0.96 Total: 36.76 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 6.21 Total: 15.43 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -1.17 Total: -70.62 kcal Atomic # 8 Polarization: -82.27 SS G_CDS: -0.24 Total: -82.51 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -67.62 7.78 -59.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155454919.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.440 kcal (2) G-P(sol) polarization free energy of solvation -67.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds