Wall clock time and date at job start Tue Mar 31 2020 19:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34230 * 116.99894 * 2 1 4 4 O 1.20819 * 120.00106 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99800 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.47170 * 300.00125 * 5 3 2 7 7 C 1.52998 * 109.47091 * 179.97438 * 5 3 2 8 8 N 1.46503 * 109.47066 * 177.93316 * 7 5 3 9 9 C 1.34777 * 119.99696 * 184.38124 * 8 7 5 10 10 O 1.21544 * 120.00254 * 4.38114 * 9 8 7 11 11 C 1.47888 * 119.99640 * 184.37211 * 9 8 7 12 12 C 1.39918 * 120.02322 * 5.10524 * 11 9 8 13 13 C 1.38339 * 120.35441 * 179.78329 * 12 11 9 14 14 C 1.37755 * 120.41222 * 0.46636 * 13 12 11 15 15 C 1.40749 * 120.03839 * 359.78955 * 14 13 12 16 16 C 1.41437 * 120.17478 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00243 * 326.16423 * 16 15 14 18 18 C 1.39944 * 119.99811 * 146.16676 * 16 15 14 19 19 N 1.30825 * 119.99801 * 356.33791 * 18 16 15 20 20 Si 1.86793 * 119.99869 * 176.33725 * 18 16 15 21 21 H 1.48498 * 109.47185 * 59.99874 * 20 18 16 22 22 H 1.48500 * 109.47140 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47245 * 299.99972 * 20 18 16 24 24 C 1.38991 * 120.02456 * 185.37366 * 11 9 8 25 25 C 1.53008 * 109.47044 * 59.99972 * 5 3 2 26 26 C 1.52997 * 109.46864 * 293.33632 * 25 5 3 27 27 C 1.52996 * 109.47350 * 294.49082 * 26 25 5 28 28 C 1.53006 * 109.46901 * 174.49156 * 26 25 5 29 29 H 1.08996 * 109.47071 * 299.99768 * 1 2 3 30 30 H 1.08998 * 109.46684 * 60.00159 * 1 2 3 31 31 H 1.09000 * 109.47205 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47075 * 297.93309 * 7 5 3 33 33 H 1.09006 * 109.47112 * 57.93337 * 7 5 3 34 34 H 0.96997 * 120.00013 * 4.38020 * 8 7 5 35 35 H 1.07999 * 119.82334 * 359.97438 * 12 11 9 36 36 H 1.07996 * 119.79214 * 180.23437 * 13 12 11 37 37 H 1.07994 * 119.97809 * 179.76130 * 14 13 12 38 38 H 0.97006 * 119.99711 * 179.97438 * 19 18 16 39 39 H 1.07998 * 120.20214 * 359.96276 * 24 11 9 40 40 H 1.08994 * 109.46685 * 173.34092 * 25 5 3 41 41 H 1.08993 * 109.46780 * 53.33968 * 25 5 3 42 42 H 1.09001 * 109.47641 * 54.49486 * 26 25 5 43 43 H 1.09004 * 109.46841 * 56.87585 * 27 26 25 44 44 H 1.09003 * 109.47346 * 176.87118 * 27 26 25 45 45 H 1.08997 * 109.47544 * 296.87363 * 27 26 25 46 46 H 1.08998 * 109.47054 * 179.97438 * 28 26 25 47 47 H 1.08997 * 109.47219 * 300.00594 * 28 26 25 48 48 H 1.08996 * 109.46990 * 60.00101 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7809 0.8908 7 6 4.0002 2.7420 -0.0002 8 7 5.4623 2.8190 0.0502 9 6 6.0710 4.0175 0.1477 10 8 5.4073 5.0278 0.2740 11 6 7.5467 4.1032 0.1012 12 6 8.3070 2.9560 -0.1507 13 6 9.6876 3.0291 -0.2002 14 6 10.3301 4.2298 0.0074 15 6 9.5822 5.3935 0.2674 16 6 10.2390 6.6277 0.4815 17 1 11.1987 6.6500 0.9761 18 6 9.6451 7.8200 0.0523 19 7 8.5174 7.7875 -0.6100 20 14 10.4625 9.4576 0.4253 21 1 11.8136 9.4879 -0.1902 22 1 9.6390 10.5603 -0.1325 23 1 10.5845 9.6265 1.8955 24 6 8.1796 5.3224 0.3132 25 6 4.1139 0.5810 -1.2484 26 6 3.8232 -0.9189 -1.1672 27 6 4.6067 -1.5281 -0.0029 28 6 4.2467 -1.5919 -2.4744 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.6419 3.2264 -0.9086 33 1 3.5796 3.2458 0.8702 34 1 5.9922 2.0074 0.0134 35 1 7.8133 2.0088 -0.3105 36 1 10.2653 2.1387 -0.3991 37 1 11.4084 4.2782 -0.0290 38 1 8.1055 8.6140 -0.9072 39 1 7.5968 6.2097 0.5117 40 1 5.1905 0.7396 -1.3095 41 1 3.6344 0.9967 -2.1345 42 1 2.7561 -1.0742 -1.0078 43 1 4.3458 -1.0110 0.9206 44 1 4.3571 -2.5851 0.0896 45 1 5.6754 -1.4222 -0.1891 46 1 4.0400 -2.6605 -2.4165 47 1 3.6885 -1.1579 -3.3040 48 1 5.3137 -1.4367 -2.6339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172642976.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:51 Heat of formation + Delta-G solvation = -124.540988 kcal Electronic energy + Delta-G solvation = -28581.471491 eV Core-core repulsion = 24600.469076 eV Total energy + Delta-G solvation = -3981.002415 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.00523 -39.25074 -37.52968 -36.88580 -36.77344 -34.52559 -33.64289 -31.74285 -30.01863 -29.44579 -28.02857 -27.38016 -26.41270 -25.25157 -23.99789 -22.09993 -21.06770 -20.80816 -20.08051 -19.55899 -17.87360 -17.76569 -17.15120 -16.45835 -16.15726 -15.38371 -15.25469 -15.01227 -14.80704 -14.67131 -14.26911 -14.04034 -13.79772 -13.60150 -13.30606 -13.09140 -12.83482 -12.67086 -12.54809 -12.46665 -12.42813 -12.23098 -11.90029 -11.75830 -11.63111 -11.17670 -11.12056 -11.10168 -10.90934 -10.79032 -10.69551 -10.57613 -10.54338 -10.47848 -10.01508 -9.70596 -9.25950 -9.04376 -8.70580 -7.64285 -7.43058 -6.67023 -4.43422 1.96629 2.18347 2.33894 2.82777 3.10600 3.12720 3.15040 3.70020 3.85465 3.97483 4.23676 4.38278 4.57674 4.70438 4.71400 4.83239 4.85129 4.90179 4.96870 5.10523 5.23739 5.42625 5.49418 5.54417 5.55584 5.59212 5.67938 5.72536 5.73319 5.79689 5.96053 5.99019 6.05306 6.07453 6.14044 6.22478 6.28948 6.68595 6.77838 6.96796 7.00874 7.24649 7.37794 7.49899 7.66597 7.73610 7.90383 8.08173 8.19593 8.51581 8.83702 8.84752 8.93110 10.27052 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018036 B = 0.002573 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.113393 B =10880.801681 C =12071.616036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.351 6.351 3 C 0.471 3.529 4 O -0.499 6.499 5 C -0.095 4.095 6 H 0.119 0.881 7 C 0.137 3.863 8 N -0.737 5.737 9 C 0.565 3.435 10 O -0.539 6.539 11 C -0.133 4.133 12 C -0.206 4.206 13 C -0.105 4.105 14 C -0.200 4.200 15 C 0.098 3.902 16 C -0.466 4.466 17 H 0.079 0.921 18 C 0.070 3.930 19 N -0.800 5.800 20 Si 0.915 3.085 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.265 1.265 24 C -0.079 4.079 25 C -0.110 4.110 26 C -0.109 4.109 27 C -0.149 4.149 28 C -0.146 4.146 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.398 0.602 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.283 0.717 39 H 0.136 0.864 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.052 0.948 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.135 -18.387 -0.788 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.268 6.268 3 C 0.313 3.687 4 O -0.385 6.385 5 C -0.114 4.114 6 H 0.136 0.864 7 C 0.013 3.987 8 N -0.393 5.393 9 C 0.355 3.645 10 O -0.416 6.416 11 C -0.136 4.136 12 C -0.226 4.226 13 C -0.123 4.123 14 C -0.220 4.220 15 C 0.095 3.905 16 C -0.496 4.496 17 H 0.097 0.903 18 C -0.147 4.147 19 N -0.425 5.425 20 Si 0.740 3.260 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.189 1.189 24 C -0.099 4.099 25 C -0.148 4.148 26 C -0.127 4.127 27 C -0.206 4.206 28 C -0.204 4.204 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.235 0.765 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.154 0.846 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.111 0.889 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.046 -17.171 -0.835 20.992 hybrid contribution 0.316 0.358 -0.019 0.478 sum -11.730 -16.813 -0.854 20.518 Atomic orbital electron populations 1.23292 0.76699 1.03613 1.02676 1.86559 1.23114 1.33062 1.84050 1.23486 0.91499 0.81444 0.72307 1.90718 1.67037 1.36244 1.44511 1.21425 0.87940 0.98993 1.03088 0.86362 1.20976 0.81564 0.92327 1.03850 1.45908 1.05871 1.09560 1.77966 1.18831 0.88778 0.82110 0.74769 1.90726 1.66789 1.35252 1.48858 1.19496 0.89915 0.95856 1.08326 1.20392 0.93864 0.95511 1.12850 1.20461 0.93832 0.96672 1.01343 1.21236 0.98298 0.93651 1.08830 1.17632 0.91363 0.92563 0.88910 1.19495 1.05158 0.90286 1.34672 0.90315 1.25918 0.94443 1.01268 0.93108 1.69728 1.15301 1.30295 1.27210 0.86250 0.79730 0.80270 0.79742 1.19085 1.20315 1.18933 1.21748 0.94985 0.95285 0.97884 1.21726 1.02413 0.95099 0.95555 1.21404 1.02093 0.93604 0.95647 1.21894 1.00210 1.00612 0.97895 1.21819 1.01557 1.00228 0.96756 0.91857 0.91872 0.88126 0.90954 0.90461 0.76539 0.89172 0.88796 0.88481 0.90580 0.84592 0.89671 0.90934 0.88922 0.92575 0.92685 0.92493 0.92701 0.92861 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.35 -3.23 7.72 -39.26 -0.30 -3.54 16 3 C 0.47 5.40 7.24 36.01 0.26 5.66 16 4 O -0.50 -7.37 15.72 -18.74 -0.29 -7.66 16 5 C -0.10 -0.99 2.31 -91.77 -0.21 -1.20 16 6 H 0.12 1.05 6.24 -51.93 -0.32 0.73 16 7 C 0.14 1.98 4.41 -4.04 -0.02 1.96 16 8 N -0.74 -11.73 5.20 -61.23 -0.32 -12.05 16 9 C 0.56 12.22 7.76 -12.31 -0.10 12.13 16 10 O -0.54 -13.71 16.33 5.33 0.09 -13.63 16 11 C -0.13 -3.07 5.87 -105.04 -0.62 -3.69 16 12 C -0.21 -4.15 9.53 -38.92 -0.37 -4.52 16 13 C -0.10 -2.16 10.01 -39.72 -0.40 -2.56 16 14 C -0.20 -4.67 9.78 -38.81 -0.38 -5.05 16 15 C 0.10 2.56 5.52 -106.87 -0.59 1.97 16 16 C -0.47 -12.26 9.05 -37.73 -0.34 -12.61 16 17 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 18 C 0.07 1.78 5.34 -17.34 -0.09 1.69 16 19 N -0.80 -21.56 10.84 55.55 0.60 -20.95 16 20 Si 0.92 19.12 29.56 -169.99 -5.02 14.10 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 24 C -0.08 -2.09 8.17 -38.44 -0.31 -2.40 16 25 C -0.11 -1.00 4.05 -26.73 -0.11 -1.11 16 26 C -0.11 -0.84 2.75 -90.62 -0.25 -1.09 16 27 C -0.15 -1.07 9.03 37.16 0.34 -0.74 16 28 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 31 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.25 8.02 -51.93 -0.42 0.83 16 34 H 0.40 5.24 5.39 -40.82 -0.22 5.02 16 35 H 0.09 1.45 6.45 -52.49 -0.34 1.12 16 36 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 38 H 0.28 7.09 8.30 -40.82 -0.34 6.75 16 39 H 0.14 3.95 5.95 -52.49 -0.31 3.64 16 40 H 0.08 0.77 6.75 -51.93 -0.35 0.42 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.75 5.23 -51.93 -0.27 0.48 16 43 H 0.06 0.40 6.31 -51.93 -0.33 0.07 16 44 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 391.25 15.07 5.90 5.90 Total: -1.00 -31.60 391.25 -8.31 -39.92 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -7.18 Total: 8.90 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -1.78 Total: -10.99 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 0.28 Total: -33.00 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.51 Total: -24.82 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.60 -8.31 -39.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172642976.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.625 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds