Wall clock time and date at job start Tue Mar 31 2020 19:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34230 * 116.99894 * 2 1 4 4 O 1.20819 * 120.00106 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99800 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.47170 * 300.00125 * 5 3 2 7 7 C 1.52998 * 109.47091 * 179.97438 * 5 3 2 8 8 N 1.46503 * 109.47066 * 177.93316 * 7 5 3 9 9 C 1.34777 * 119.99696 * 184.38124 * 8 7 5 10 10 O 1.21544 * 120.00254 * 4.38114 * 9 8 7 11 11 C 1.47888 * 119.99640 * 184.37211 * 9 8 7 12 12 C 1.39918 * 120.02322 * 5.10524 * 11 9 8 13 13 C 1.38339 * 120.35441 * 179.78329 * 12 11 9 14 14 C 1.37755 * 120.41222 * 0.46636 * 13 12 11 15 15 C 1.40749 * 120.03839 * 359.78955 * 14 13 12 16 16 C 1.41437 * 120.17478 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00243 * 326.16423 * 16 15 14 18 18 C 1.39944 * 119.99811 * 146.16676 * 16 15 14 19 19 N 1.30825 * 119.99801 * 356.33791 * 18 16 15 20 20 Si 1.86793 * 119.99869 * 176.33725 * 18 16 15 21 21 H 1.48498 * 109.47185 * 59.99874 * 20 18 16 22 22 H 1.48500 * 109.47140 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47245 * 299.99972 * 20 18 16 24 24 C 1.38991 * 120.02456 * 185.37366 * 11 9 8 25 25 C 1.53008 * 109.47044 * 59.99972 * 5 3 2 26 26 C 1.52997 * 109.46864 * 293.33632 * 25 5 3 27 27 C 1.52996 * 109.47350 * 294.49082 * 26 25 5 28 28 C 1.53006 * 109.46901 * 174.49156 * 26 25 5 29 29 H 1.08996 * 109.47071 * 299.99768 * 1 2 3 30 30 H 1.08998 * 109.46684 * 60.00159 * 1 2 3 31 31 H 1.09000 * 109.47205 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47075 * 297.93309 * 7 5 3 33 33 H 1.09006 * 109.47112 * 57.93337 * 7 5 3 34 34 H 0.96997 * 120.00013 * 4.38020 * 8 7 5 35 35 H 1.07999 * 119.82334 * 359.97438 * 12 11 9 36 36 H 1.07996 * 119.79214 * 180.23437 * 13 12 11 37 37 H 1.07994 * 119.97809 * 179.76130 * 14 13 12 38 38 H 0.97006 * 119.99711 * 179.97438 * 19 18 16 39 39 H 1.07998 * 120.20214 * 359.96276 * 24 11 9 40 40 H 1.08994 * 109.46685 * 173.34092 * 25 5 3 41 41 H 1.08993 * 109.46780 * 53.33968 * 25 5 3 42 42 H 1.09001 * 109.47641 * 54.49486 * 26 25 5 43 43 H 1.09004 * 109.46841 * 56.87585 * 27 26 25 44 44 H 1.09003 * 109.47346 * 176.87118 * 27 26 25 45 45 H 1.08997 * 109.47544 * 296.87363 * 27 26 25 46 46 H 1.08998 * 109.47054 * 179.97438 * 28 26 25 47 47 H 1.08997 * 109.47219 * 300.00594 * 28 26 25 48 48 H 1.08996 * 109.46990 * 60.00101 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7809 0.8908 7 6 4.0002 2.7420 -0.0002 8 7 5.4623 2.8190 0.0502 9 6 6.0710 4.0175 0.1477 10 8 5.4073 5.0278 0.2740 11 6 7.5467 4.1032 0.1012 12 6 8.3070 2.9560 -0.1507 13 6 9.6876 3.0291 -0.2002 14 6 10.3301 4.2298 0.0074 15 6 9.5822 5.3935 0.2674 16 6 10.2390 6.6277 0.4815 17 1 11.1987 6.6500 0.9761 18 6 9.6451 7.8200 0.0523 19 7 8.5174 7.7875 -0.6100 20 14 10.4625 9.4576 0.4253 21 1 11.8136 9.4879 -0.1902 22 1 9.6390 10.5603 -0.1325 23 1 10.5845 9.6265 1.8955 24 6 8.1796 5.3224 0.3132 25 6 4.1139 0.5810 -1.2484 26 6 3.8232 -0.9189 -1.1672 27 6 4.6067 -1.5281 -0.0029 28 6 4.2467 -1.5919 -2.4744 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.6419 3.2264 -0.9086 33 1 3.5796 3.2458 0.8702 34 1 5.9922 2.0074 0.0134 35 1 7.8133 2.0088 -0.3105 36 1 10.2653 2.1387 -0.3991 37 1 11.4084 4.2782 -0.0290 38 1 8.1055 8.6140 -0.9072 39 1 7.5968 6.2097 0.5117 40 1 5.1905 0.7396 -1.3095 41 1 3.6344 0.9967 -2.1345 42 1 2.7561 -1.0742 -1.0078 43 1 4.3458 -1.0110 0.9206 44 1 4.3571 -2.5851 0.0896 45 1 5.6754 -1.4222 -0.1891 46 1 4.0400 -2.6605 -2.4165 47 1 3.6885 -1.1579 -3.3040 48 1 5.3137 -1.4367 -2.6339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172642976.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:50 Heat of formation + Delta-G solvation = -142.631773 kcal Electronic energy + Delta-G solvation = -28582.255966 eV Core-core repulsion = 24600.469076 eV Total energy + Delta-G solvation = -3981.786890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.93451 -40.87751 -38.93184 -38.14686 -37.66120 -35.84120 -35.44496 -32.99127 -31.65785 -31.25373 -28.73610 -27.90868 -27.54436 -26.97572 -25.13683 -23.61276 -22.74421 -21.86814 -21.20474 -20.75122 -19.52199 -18.78407 -18.04438 -17.89622 -17.38832 -16.90409 -16.60394 -16.40614 -16.32062 -15.73280 -15.46845 -15.07398 -15.03261 -14.73078 -14.64710 -14.31458 -14.25201 -14.11644 -13.86573 -13.50052 -13.27454 -13.09360 -12.91828 -12.86871 -12.81144 -12.60933 -12.52840 -12.48084 -12.19645 -11.91685 -11.89589 -11.64656 -11.50707 -11.46771 -11.39263 -11.19953 -11.10972 -10.83304 -10.22763 -9.44131 -9.28037 -8.54406 -6.40736 0.37233 1.03695 1.05792 1.37275 1.46813 1.48410 1.50084 2.09042 2.22622 2.33045 2.84480 3.28469 3.56100 3.67919 3.77621 3.99249 4.02270 4.18647 4.19716 4.32261 4.33601 4.38322 4.44409 4.59809 4.66283 4.68128 4.71978 4.83048 4.90635 4.93656 4.98224 5.03693 5.11592 5.17067 5.18428 5.19571 5.27512 5.33606 5.36359 5.42254 5.54361 5.56815 5.68627 5.87444 5.91460 6.08670 6.31293 6.50843 6.62565 6.67695 6.92638 6.96943 7.28132 8.40858 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018036 B = 0.002573 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.113393 B =10880.801681 C =12071.616036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.342 6.342 3 C 0.475 3.525 4 O -0.539 6.539 5 C -0.083 4.083 6 H 0.143 0.857 7 C 0.139 3.861 8 N -0.707 5.707 9 C 0.561 3.439 10 O -0.588 6.588 11 C -0.143 4.143 12 C -0.179 4.179 13 C -0.101 4.101 14 C -0.202 4.202 15 C 0.063 3.937 16 C -0.502 4.502 17 H 0.082 0.918 18 C 0.023 3.977 19 N -0.844 5.844 20 Si 0.986 3.014 21 H -0.254 1.254 22 H -0.276 1.276 23 H -0.260 1.260 24 C -0.117 4.117 25 C -0.108 4.108 26 C -0.104 4.104 27 C -0.150 4.150 28 C -0.146 4.146 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.136 0.864 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.416 0.584 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.111 0.889 38 H 0.282 0.718 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.049 0.951 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.419 -22.270 -0.985 24.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.258 6.258 3 C 0.319 3.681 4 O -0.429 6.429 5 C -0.102 4.102 6 H 0.161 0.839 7 C 0.015 3.985 8 N -0.362 5.362 9 C 0.352 3.648 10 O -0.469 6.469 11 C -0.147 4.147 12 C -0.199 4.199 13 C -0.119 4.119 14 C -0.221 4.221 15 C 0.061 3.939 16 C -0.533 4.533 17 H 0.100 0.900 18 C -0.189 4.189 19 N -0.472 5.472 20 Si 0.807 3.193 21 H -0.178 1.178 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.138 4.138 25 C -0.146 4.146 26 C -0.122 4.122 27 C -0.207 4.207 28 C -0.203 4.203 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.154 0.846 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.256 0.744 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.129 0.871 38 H 0.092 0.908 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.318 -21.156 -1.034 24.015 hybrid contribution -0.008 1.273 0.024 1.274 sum -11.327 -19.882 -1.010 22.905 Atomic orbital electron populations 1.23586 0.75193 1.05819 1.02362 1.86555 1.24500 1.31441 1.83305 1.23607 0.91771 0.81509 0.71244 1.90716 1.67920 1.37678 1.46573 1.21331 0.87667 0.96110 1.05123 0.83925 1.20945 0.80100 0.95238 1.02212 1.45561 1.06725 1.08362 1.75532 1.18776 0.88401 0.82999 0.74673 1.90706 1.67531 1.37399 1.51289 1.19752 0.91044 0.95921 1.07946 1.20953 0.93967 0.96211 1.08729 1.20982 0.94311 0.97257 0.99362 1.21554 0.99103 0.93792 1.07692 1.17967 0.91657 0.93989 0.90301 1.19789 1.05822 0.91398 1.36294 0.89958 1.26825 0.94789 1.04862 0.92465 1.69875 1.17147 1.30901 1.29248 0.85186 0.78958 0.75526 0.79626 1.17790 1.20075 1.18424 1.21515 0.95327 0.95604 1.01368 1.21759 1.02507 0.96063 0.94269 1.21347 1.02129 0.92326 0.96365 1.21913 1.00327 1.01047 0.97435 1.21816 1.01532 1.00708 0.96272 0.92234 0.92254 0.84626 0.92567 0.92412 0.74397 0.83894 0.83852 0.87131 0.90789 0.88596 0.89010 0.91634 0.89173 0.92457 0.91981 0.92055 0.91822 0.93217 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.56 113.37 1.20 1.48 16 2 O -0.34 -5.57 7.72 -51.42 -0.40 -5.97 16 3 C 0.47 10.36 7.24 71.24 0.52 10.87 16 4 O -0.54 -16.06 15.72 21.99 0.35 -15.72 16 5 C -0.08 -1.57 2.31 -11.54 -0.03 -1.60 16 6 H 0.14 2.05 6.24 -2.39 -0.01 2.04 16 7 C 0.14 3.96 4.41 86.38 0.38 4.35 16 8 N -0.71 -21.40 5.20 -465.92 -2.42 -23.83 16 9 C 0.56 24.57 7.76 86.80 0.67 25.25 16 10 O -0.59 -31.55 16.33 -3.85 -0.06 -31.61 16 11 C -0.14 -6.63 5.87 -20.13 -0.12 -6.74 16 12 C -0.18 -6.56 9.53 22.70 0.22 -6.34 16 13 C -0.10 -3.76 10.01 22.18 0.22 -3.54 16 14 C -0.20 -9.14 9.78 22.77 0.22 -8.92 16 15 C 0.06 3.40 5.52 -21.32 -0.12 3.28 16 16 C -0.50 -27.59 9.05 23.47 0.21 -27.38 16 17 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 18 C 0.02 1.21 5.34 85.26 0.46 1.66 16 19 N -0.84 -48.60 10.84 21.83 0.24 -48.37 16 20 Si 0.99 40.76 29.56 68.60 2.03 42.79 16 21 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 22 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 23 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 24 C -0.12 -6.53 8.17 23.01 0.19 -6.34 16 25 C -0.11 -1.67 4.05 30.60 0.12 -1.54 16 26 C -0.10 -1.26 2.75 -10.79 -0.03 -1.29 16 27 C -0.15 -1.56 9.03 71.98 0.65 -0.91 16 28 C -0.15 -1.66 9.19 71.98 0.66 -1.00 16 29 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 30 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 31 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.06 1.91 8.02 -2.38 -0.02 1.89 16 34 H 0.42 9.34 5.39 -92.71 -0.50 8.84 16 35 H 0.14 3.69 6.45 -2.91 -0.02 3.67 16 36 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 37 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 38 H 0.28 15.15 8.30 -92.70 -0.77 14.38 16 39 H 0.10 6.06 5.95 -2.91 -0.02 6.04 16 40 H 0.09 1.30 6.75 -2.39 -0.02 1.28 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.09 1.17 5.23 -2.39 -0.01 1.16 16 43 H 0.06 0.58 6.31 -2.39 -0.02 0.57 16 44 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -75.66 391.25 5.63 -70.03 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 0.47 Total: 31.38 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 5.43 Total: -18.70 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: -2.19 Total: -72.19 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -0.11 Total: -53.30 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -75.66 5.63 -70.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172642976.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.600 kcal (2) G-P(sol) polarization free energy of solvation -75.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds