Wall clock time and date at job start Tue Mar 31 2020 19:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34224 * 116.99829 * 2 1 4 4 O 1.20832 * 120.00328 * 356.15185 * 3 2 1 5 5 C 1.50699 * 120.00229 * 176.43135 * 3 2 1 6 6 H 1.09005 * 109.47186 * 28.09712 * 5 3 2 7 7 C 1.52998 * 109.47553 * 148.09409 * 5 3 2 8 8 N 1.46498 * 109.47489 * 295.00226 * 7 5 3 9 9 C 1.34773 * 120.00153 * 180.02562 * 8 7 5 10 10 O 1.21546 * 119.99798 * 359.97438 * 9 8 7 11 11 C 1.47886 * 119.99764 * 180.02562 * 9 8 7 12 12 C 1.39916 * 120.03014 * 359.71738 * 11 9 8 13 13 C 1.38327 * 120.36260 * 179.78733 * 12 11 9 14 14 C 1.37748 * 120.40857 * 0.47271 * 13 12 11 15 15 C 1.40748 * 120.04417 * 359.78477 * 14 13 12 16 16 C 1.41440 * 120.18223 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99988 * 338.54104 * 16 15 14 18 18 C 1.39932 * 119.99978 * 158.54107 * 16 15 14 19 19 N 1.30830 * 120.00210 * 338.19270 * 18 16 15 20 20 Si 1.86802 * 120.00101 * 158.19319 * 18 16 15 21 21 H 1.48499 * 109.47201 * 89.99655 * 20 18 16 22 22 H 1.48494 * 109.47065 * 210.00226 * 20 18 16 23 23 H 1.48505 * 109.46795 * 329.99767 * 20 18 16 24 24 C 1.38995 * 120.02366 * 179.97438 * 11 9 8 25 25 C 1.53001 * 109.47239 * 268.09855 * 5 3 2 26 26 C 1.52994 * 109.47288 * 174.58957 * 25 5 3 27 27 C 1.53003 * 109.47061 * 173.89345 * 26 25 5 28 28 C 1.53003 * 109.47418 * 293.89173 * 26 25 5 29 29 H 1.08992 * 109.47159 * 60.00059 * 1 2 3 30 30 H 1.09005 * 109.46586 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46532 * 299.99372 * 1 2 3 32 32 H 1.08999 * 109.46647 * 55.00288 * 7 5 3 33 33 H 1.09000 * 109.47017 * 175.00011 * 7 5 3 34 34 H 0.97003 * 119.99566 * 359.97438 * 8 7 5 35 35 H 1.08004 * 119.81575 * 0.02562 * 12 11 9 36 36 H 1.08000 * 119.79199 * 180.23962 * 13 12 11 37 37 H 1.08008 * 119.98142 * 179.76467 * 14 13 12 38 38 H 0.96998 * 120.00211 * 180.02562 * 19 18 16 39 39 H 1.08001 * 120.20291 * 359.95305 * 24 11 9 40 40 H 1.08998 * 109.47115 * 294.59040 * 25 5 3 41 41 H 1.09006 * 109.47189 * 54.58619 * 25 5 3 42 42 H 1.09001 * 109.47343 * 53.89681 * 26 25 5 43 43 H 1.08997 * 109.47021 * 60.00404 * 27 26 25 44 44 H 1.09003 * 109.47377 * 180.02562 * 27 26 25 45 45 H 1.08997 * 109.47274 * 300.00115 * 27 26 25 46 46 H 1.08993 * 109.47116 * 185.18425 * 28 26 25 47 47 H 1.09003 * 109.47128 * 305.18672 * 28 26 25 48 48 H 1.09004 * 109.46785 * 65.18392 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4054 2.2083 -0.0702 5 6 3.5640 1.2761 0.0812 6 1 3.9999 0.3768 -0.3540 7 6 4.0518 2.5040 -0.6903 8 7 3.7490 2.3383 -2.1140 9 6 4.0902 3.3020 -2.9921 10 8 4.6487 4.3089 -2.6028 11 6 3.7839 3.1350 -4.4293 12 6 3.1453 1.9740 -4.8788 13 6 2.8517 1.8125 -6.2208 14 6 3.1930 2.7879 -7.1315 15 6 3.8407 3.9603 -6.6990 16 6 4.1920 4.9640 -7.6315 17 1 4.2922 4.7174 -8.6782 18 6 4.4097 6.2765 -7.1980 19 7 3.8969 6.6851 -6.0658 20 14 5.4327 7.4454 -8.2357 21 1 4.5479 8.1691 -9.1837 22 1 6.1161 8.4233 -7.3515 23 1 6.4472 6.6729 -8.9968 24 6 4.1351 4.1288 -5.3353 25 6 3.9902 1.3917 1.5461 26 6 5.5163 1.3373 1.6392 27 6 5.9492 1.6049 3.0821 28 6 6.0045 -0.0474 1.2088 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8901 32 1 3.5481 3.3938 -0.3128 33 1 5.1284 2.6121 -0.5580 34 1 3.3036 1.5345 -2.4247 35 1 2.8768 1.2014 -4.1734 36 1 2.3551 0.9143 -6.5571 37 1 2.9638 2.6530 -8.1784 38 1 4.0475 7.5950 -5.7655 39 1 4.6312 5.0251 -4.9934 40 1 3.6348 2.3378 1.9543 41 1 3.5618 0.5667 2.1154 42 1 5.9475 2.0944 0.9842 43 1 5.5181 0.8478 3.7370 44 1 7.0365 1.5666 3.1483 45 1 5.6014 2.5913 3.3888 46 1 7.0814 -0.1168 1.3621 47 1 5.5028 -0.8107 1.8036 48 1 5.7771 -0.2011 0.1538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172642981.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:55 Heat of formation + Delta-G solvation = -128.456690 kcal Electronic energy + Delta-G solvation = -28670.572451 eV Core-core repulsion = 24689.400239 eV Total energy + Delta-G solvation = -3981.172212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.87296 -39.15792 -37.75629 -36.88787 -36.49827 -34.43059 -33.73031 -31.80707 -30.05517 -29.41364 -28.01082 -27.43128 -26.27027 -25.21669 -24.17393 -22.20257 -20.96191 -20.77841 -19.98645 -19.39008 -17.98742 -17.73331 -16.85659 -16.54922 -16.22297 -15.76014 -15.19250 -14.89082 -14.71711 -14.58026 -14.31392 -13.96947 -13.79224 -13.41548 -13.23833 -13.17512 -12.99951 -12.60082 -12.53351 -12.44957 -12.35938 -12.12175 -12.02357 -11.65162 -11.56619 -11.28148 -11.13624 -11.04943 -10.96493 -10.91160 -10.80344 -10.74499 -10.48900 -10.36931 -10.04176 -9.68103 -9.16962 -9.00771 -8.66636 -7.62312 -7.52715 -6.82823 -4.39077 2.04490 2.23823 2.50461 2.82386 3.07950 3.11060 3.18409 3.59837 3.88789 3.92285 4.26965 4.46946 4.52466 4.63210 4.71408 4.78545 4.92772 4.97994 5.01563 5.08598 5.31661 5.34619 5.36635 5.43603 5.55624 5.61623 5.62828 5.63853 5.71006 5.79444 5.90525 5.96464 6.05622 6.09898 6.12576 6.23530 6.29383 6.73600 6.81031 6.99160 7.03965 7.21976 7.39520 7.60789 7.71329 7.77105 7.94088 8.07634 8.19576 8.51249 8.80247 8.85009 8.95763 10.11730 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013671 B = 0.002863 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.596025 B = 9778.954029 C =10843.358011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.459 3.541 4 O -0.490 6.490 5 C -0.093 4.093 6 H 0.112 0.888 7 C 0.131 3.869 8 N -0.738 5.738 9 C 0.567 3.433 10 O -0.544 6.544 11 C -0.125 4.125 12 C -0.222 4.222 13 C -0.095 4.095 14 C -0.216 4.216 15 C 0.099 3.901 16 C -0.459 4.459 17 H 0.082 0.918 18 C 0.075 3.925 19 N -0.775 5.775 20 Si 0.908 3.092 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.259 1.259 24 C -0.097 4.097 25 C -0.101 4.101 26 C -0.101 4.101 27 C -0.147 4.147 28 C -0.152 4.152 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.396 0.604 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.286 0.714 39 H 0.134 0.866 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.056 0.944 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.301 -13.101 15.562 20.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.277 6.277 3 C 0.301 3.699 4 O -0.375 6.375 5 C -0.112 4.112 6 H 0.130 0.870 7 C 0.007 3.993 8 N -0.393 5.393 9 C 0.358 3.642 10 O -0.422 6.422 11 C -0.128 4.128 12 C -0.243 4.243 13 C -0.113 4.113 14 C -0.236 4.236 15 C 0.096 3.904 16 C -0.487 4.487 17 H 0.100 0.900 18 C -0.146 4.146 19 N -0.399 5.399 20 Si 0.731 3.269 21 H -0.194 1.194 22 H -0.199 1.199 23 H -0.183 1.183 24 C -0.117 4.117 25 C -0.139 4.139 26 C -0.119 4.119 27 C -0.204 4.204 28 C -0.209 4.209 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.231 0.769 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.152 0.848 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.168 -11.838 15.985 19.892 hybrid contribution -0.261 0.142 -0.553 0.628 sum -0.429 -11.696 15.432 19.368 Atomic orbital electron populations 1.23282 0.76300 1.03647 1.02759 1.86507 1.23489 1.33476 1.84229 1.23725 0.91879 0.81517 0.72804 1.90727 1.66927 1.36285 1.43611 1.21423 0.87799 1.02215 0.99784 0.86983 1.21289 1.01134 0.96027 0.80823 1.45924 1.63667 1.22978 1.06683 1.18807 0.77061 0.81706 0.86659 1.90693 1.42439 1.28798 1.80262 1.19444 1.05289 0.97355 0.90749 1.20285 1.10812 0.97846 0.95307 1.20410 0.99987 0.97667 0.93239 1.21045 1.07132 0.97558 0.97862 1.17587 0.88792 0.91861 0.92134 1.19583 1.41145 0.92297 0.95670 0.90010 1.25993 0.93909 0.99400 0.95251 1.69818 1.31868 1.18562 1.19641 0.86320 0.80644 0.79609 0.80281 1.19418 1.19885 1.18296 1.21624 0.99856 0.97767 0.92462 1.21578 0.96677 1.03606 0.92003 1.21217 0.94059 0.98729 0.97929 1.21823 1.01343 1.01659 0.95560 1.21925 1.01251 0.96124 1.01600 0.91556 0.88105 0.92025 0.90290 0.89860 0.76899 0.89554 0.88979 0.88664 0.90328 0.84848 0.90482 0.90521 0.90046 0.92698 0.92394 0.92487 0.92425 0.92530 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.57 101.05 1.07 1.37 16 2 O -0.36 -4.01 10.57 -39.24 -0.41 -4.42 16 3 C 0.46 5.88 6.52 36.01 0.23 6.12 16 4 O -0.49 -8.02 15.84 -18.75 -0.30 -8.31 16 5 C -0.09 -0.99 2.22 -91.77 -0.20 -1.19 16 6 H 0.11 1.02 6.48 -51.93 -0.34 0.68 16 7 C 0.13 1.88 4.66 -4.04 -0.02 1.86 16 8 N -0.74 -12.83 5.30 -61.24 -0.32 -13.16 16 9 C 0.57 12.84 7.77 -12.31 -0.10 12.74 16 10 O -0.54 -13.96 16.33 5.33 0.09 -13.87 16 11 C -0.13 -3.04 5.87 -105.04 -0.62 -3.66 16 12 C -0.22 -4.83 9.55 -38.92 -0.37 -5.20 16 13 C -0.09 -2.07 10.01 -39.73 -0.40 -2.46 16 14 C -0.22 -5.22 9.78 -38.81 -0.38 -5.60 16 15 C 0.10 2.65 5.59 -106.87 -0.60 2.05 16 16 C -0.46 -12.15 9.04 -37.73 -0.34 -12.49 16 17 H 0.08 2.05 7.93 -52.49 -0.42 1.63 16 18 C 0.07 1.90 5.08 -17.34 -0.09 1.82 16 19 N -0.78 -20.77 11.00 55.55 0.61 -20.16 16 20 Si 0.91 18.84 29.61 -169.99 -5.03 13.80 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 23 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 24 C -0.10 -2.64 8.27 -38.44 -0.32 -2.96 16 25 C -0.10 -0.85 4.12 -26.73 -0.11 -0.96 16 26 C -0.10 -0.79 2.80 -90.62 -0.25 -1.04 16 27 C -0.15 -1.01 9.19 37.16 0.34 -0.66 16 28 C -0.15 -1.09 8.85 37.16 0.33 -0.76 16 29 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.30 7.67 -51.93 -0.40 0.90 16 33 H 0.08 1.13 6.25 -51.93 -0.32 0.81 16 34 H 0.40 6.18 6.25 -40.82 -0.26 5.92 16 35 H 0.09 1.58 6.38 -52.48 -0.33 1.24 16 36 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.10 2.13 8.06 -52.48 -0.42 1.71 16 38 H 0.29 7.02 8.30 -40.82 -0.34 6.68 16 39 H 0.13 3.91 5.66 -52.49 -0.30 3.61 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.73 6.22 -51.93 -0.32 0.40 16 43 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.06 0.45 6.74 -51.93 -0.35 0.10 16 LS Contribution 395.24 15.07 5.96 5.96 Total: -1.00 -32.27 395.24 -8.48 -40.75 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -7.24 Total: 10.45 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -1.82 Total: -11.04 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.29 Total: -33.31 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.62 Total: -26.61 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.27 -8.48 -40.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172642981.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.707 kcal (2) G-P(sol) polarization free energy of solvation -32.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds