Wall clock time and date at job start Tue Mar 31 2020 19:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34224 * 116.99829 * 2 1 4 4 O 1.20832 * 120.00328 * 356.15185 * 3 2 1 5 5 C 1.50699 * 120.00229 * 176.43135 * 3 2 1 6 6 H 1.09005 * 109.47186 * 28.09712 * 5 3 2 7 7 C 1.52998 * 109.47553 * 148.09409 * 5 3 2 8 8 N 1.46498 * 109.47489 * 295.00226 * 7 5 3 9 9 C 1.34773 * 120.00153 * 180.02562 * 8 7 5 10 10 O 1.21546 * 119.99798 * 359.97438 * 9 8 7 11 11 C 1.47886 * 119.99764 * 180.02562 * 9 8 7 12 12 C 1.39916 * 120.03014 * 359.71738 * 11 9 8 13 13 C 1.38327 * 120.36260 * 179.78733 * 12 11 9 14 14 C 1.37748 * 120.40857 * 0.47271 * 13 12 11 15 15 C 1.40748 * 120.04417 * 359.78477 * 14 13 12 16 16 C 1.41440 * 120.18223 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99988 * 338.54104 * 16 15 14 18 18 C 1.39932 * 119.99978 * 158.54107 * 16 15 14 19 19 N 1.30830 * 120.00210 * 338.19270 * 18 16 15 20 20 Si 1.86802 * 120.00101 * 158.19319 * 18 16 15 21 21 H 1.48499 * 109.47201 * 89.99655 * 20 18 16 22 22 H 1.48494 * 109.47065 * 210.00226 * 20 18 16 23 23 H 1.48505 * 109.46795 * 329.99767 * 20 18 16 24 24 C 1.38995 * 120.02366 * 179.97438 * 11 9 8 25 25 C 1.53001 * 109.47239 * 268.09855 * 5 3 2 26 26 C 1.52994 * 109.47288 * 174.58957 * 25 5 3 27 27 C 1.53003 * 109.47061 * 173.89345 * 26 25 5 28 28 C 1.53003 * 109.47418 * 293.89173 * 26 25 5 29 29 H 1.08992 * 109.47159 * 60.00059 * 1 2 3 30 30 H 1.09005 * 109.46586 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46532 * 299.99372 * 1 2 3 32 32 H 1.08999 * 109.46647 * 55.00288 * 7 5 3 33 33 H 1.09000 * 109.47017 * 175.00011 * 7 5 3 34 34 H 0.97003 * 119.99566 * 359.97438 * 8 7 5 35 35 H 1.08004 * 119.81575 * 0.02562 * 12 11 9 36 36 H 1.08000 * 119.79199 * 180.23962 * 13 12 11 37 37 H 1.08008 * 119.98142 * 179.76467 * 14 13 12 38 38 H 0.96998 * 120.00211 * 180.02562 * 19 18 16 39 39 H 1.08001 * 120.20291 * 359.95305 * 24 11 9 40 40 H 1.08998 * 109.47115 * 294.59040 * 25 5 3 41 41 H 1.09006 * 109.47189 * 54.58619 * 25 5 3 42 42 H 1.09001 * 109.47343 * 53.89681 * 26 25 5 43 43 H 1.08997 * 109.47021 * 60.00404 * 27 26 25 44 44 H 1.09003 * 109.47377 * 180.02562 * 27 26 25 45 45 H 1.08997 * 109.47274 * 300.00115 * 27 26 25 46 46 H 1.08993 * 109.47116 * 185.18425 * 28 26 25 47 47 H 1.09003 * 109.47128 * 305.18672 * 28 26 25 48 48 H 1.09004 * 109.46785 * 65.18392 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4054 2.2083 -0.0702 5 6 3.5640 1.2761 0.0812 6 1 3.9999 0.3768 -0.3540 7 6 4.0518 2.5040 -0.6903 8 7 3.7490 2.3383 -2.1140 9 6 4.0902 3.3020 -2.9921 10 8 4.6487 4.3089 -2.6028 11 6 3.7839 3.1350 -4.4293 12 6 3.1453 1.9740 -4.8788 13 6 2.8517 1.8125 -6.2208 14 6 3.1930 2.7879 -7.1315 15 6 3.8407 3.9603 -6.6990 16 6 4.1920 4.9640 -7.6315 17 1 4.2922 4.7174 -8.6782 18 6 4.4097 6.2765 -7.1980 19 7 3.8969 6.6851 -6.0658 20 14 5.4327 7.4454 -8.2357 21 1 4.5479 8.1691 -9.1837 22 1 6.1161 8.4233 -7.3515 23 1 6.4472 6.6729 -8.9968 24 6 4.1351 4.1288 -5.3353 25 6 3.9902 1.3917 1.5461 26 6 5.5163 1.3373 1.6392 27 6 5.9492 1.6049 3.0821 28 6 6.0045 -0.0474 1.2088 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8901 32 1 3.5481 3.3938 -0.3128 33 1 5.1284 2.6121 -0.5580 34 1 3.3036 1.5345 -2.4247 35 1 2.8768 1.2014 -4.1734 36 1 2.3551 0.9143 -6.5571 37 1 2.9638 2.6530 -8.1784 38 1 4.0475 7.5950 -5.7655 39 1 4.6312 5.0251 -4.9934 40 1 3.6348 2.3378 1.9543 41 1 3.5618 0.5667 2.1154 42 1 5.9475 2.0944 0.9842 43 1 5.5181 0.8478 3.7370 44 1 7.0365 1.5666 3.1483 45 1 5.6014 2.5913 3.3888 46 1 7.0814 -0.1168 1.3621 47 1 5.5028 -0.8107 1.8036 48 1 5.7771 -0.2011 0.1538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172642981.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:54 Heat of formation + Delta-G solvation = -147.057807 kcal Electronic energy + Delta-G solvation = -28671.379056 eV Core-core repulsion = 24689.400239 eV Total energy + Delta-G solvation = -3981.978817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.91296 -40.82505 -38.98870 -38.38807 -37.45506 -35.88164 -35.53160 -33.01837 -31.77135 -31.28340 -28.79930 -27.96832 -27.58468 -26.92671 -25.13652 -23.90346 -22.81123 -21.68735 -21.31572 -20.60865 -19.50301 -18.94974 -18.14985 -17.63125 -17.53407 -17.15858 -16.83593 -16.45204 -16.08761 -15.93370 -15.33282 -15.14747 -15.07407 -14.78828 -14.48001 -14.29708 -14.27160 -14.14116 -13.93860 -13.48549 -13.37577 -13.04644 -12.99886 -12.91833 -12.79108 -12.71383 -12.55933 -12.36719 -12.20561 -12.02314 -11.94538 -11.83933 -11.59679 -11.54019 -11.47691 -11.26855 -11.04669 -10.83752 -10.22460 -9.51912 -9.42061 -8.71624 -6.38199 0.35530 0.99110 1.04419 1.35516 1.45831 1.53060 1.62850 2.05708 2.13994 2.18177 2.75030 3.32474 3.65497 3.69076 3.71680 3.99335 4.04464 4.05727 4.11952 4.29213 4.31919 4.37558 4.41430 4.48198 4.56366 4.67668 4.70252 4.78603 4.82851 4.89729 4.90541 4.98861 5.06549 5.09398 5.13200 5.17357 5.27099 5.30078 5.32494 5.37649 5.49193 5.49822 5.52999 5.83714 5.90821 6.03351 6.25892 6.43016 6.61912 6.64225 6.85226 6.93023 7.22888 8.25262 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013671 B = 0.002863 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.596025 B = 9778.954029 C =10843.358011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.354 6.354 3 C 0.461 3.539 4 O -0.533 6.533 5 C -0.081 4.081 6 H 0.138 0.862 7 C 0.129 3.871 8 N -0.716 5.716 9 C 0.562 3.438 10 O -0.585 6.585 11 C -0.138 4.138 12 C -0.205 4.205 13 C -0.092 4.092 14 C -0.221 4.221 15 C 0.068 3.932 16 C -0.495 4.495 17 H 0.087 0.913 18 C 0.031 3.969 19 N -0.819 5.819 20 Si 0.982 3.018 21 H -0.256 1.256 22 H -0.272 1.272 23 H -0.253 1.253 24 C -0.136 4.136 25 C -0.095 4.095 26 C -0.100 4.100 27 C -0.146 4.146 28 C -0.151 4.151 29 H 0.053 0.947 30 H 0.136 0.864 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.407 0.593 35 H 0.129 0.871 36 H 0.139 0.861 37 H 0.110 0.890 38 H 0.288 0.712 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.059 0.941 47 H 0.069 0.931 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.612 -16.290 16.146 22.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.270 6.270 3 C 0.305 3.695 4 O -0.422 6.422 5 C -0.100 4.100 6 H 0.156 0.844 7 C 0.006 3.994 8 N -0.369 5.369 9 C 0.352 3.648 10 O -0.466 6.466 11 C -0.141 4.141 12 C -0.225 4.225 13 C -0.110 4.110 14 C -0.241 4.241 15 C 0.066 3.934 16 C -0.524 4.524 17 H 0.105 0.895 18 C -0.185 4.185 19 N -0.444 5.444 20 Si 0.802 3.198 21 H -0.181 1.181 22 H -0.197 1.197 23 H -0.177 1.177 24 C -0.157 4.157 25 C -0.133 4.133 26 C -0.118 4.118 27 C -0.203 4.203 28 C -0.208 4.208 29 H 0.072 0.928 30 H 0.154 0.846 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.245 0.755 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.128 0.872 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.086 0.914 41 H 0.116 0.884 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.504 -15.106 16.587 22.440 hybrid contribution -0.284 0.921 -0.624 1.148 sum -0.788 -14.185 15.963 21.369 Atomic orbital electron populations 1.23566 0.74951 1.05858 1.02327 1.86506 1.24785 1.32208 1.83551 1.24058 0.92473 0.81389 0.71586 1.90726 1.67933 1.37742 1.45755 1.21416 0.86697 1.01103 1.00806 0.84421 1.21433 1.01641 0.97204 0.79086 1.45731 1.61933 1.21841 1.07398 1.18722 0.77078 0.82115 0.86852 1.90667 1.44517 1.30681 1.80781 1.19762 1.05140 0.97721 0.91468 1.20759 1.08055 0.97264 0.96388 1.20897 0.98882 0.98455 0.92730 1.21369 1.06309 0.97144 0.99280 1.17946 0.89845 0.93366 0.92260 1.19876 1.43242 0.93266 0.95999 0.89538 1.26917 0.94360 1.00906 0.96338 1.69915 1.33620 1.19090 1.21726 0.85206 0.78916 0.77161 0.78494 1.18051 1.19697 1.17662 1.21441 1.02439 0.98152 0.93627 1.21596 0.97237 1.04060 0.90404 1.21196 0.93363 0.98953 0.98329 1.21813 1.01631 1.01804 0.95036 1.21930 1.01583 0.95715 1.01618 0.92766 0.84560 0.91808 0.92732 0.88954 0.75540 0.85291 0.84354 0.87218 0.90167 0.88227 0.91358 0.88416 0.91612 0.91509 0.92088 0.92983 0.92221 0.91224 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.57 113.37 1.20 1.60 16 2 O -0.35 -6.85 10.57 -51.36 -0.54 -7.40 16 3 C 0.46 10.98 6.52 71.24 0.46 11.45 16 4 O -0.53 -17.20 15.84 21.95 0.35 -16.86 16 5 C -0.08 -1.57 2.22 -11.54 -0.03 -1.59 16 6 H 0.14 2.02 6.48 -2.38 -0.02 2.00 16 7 C 0.13 3.65 4.66 86.38 0.40 4.06 16 8 N -0.72 -24.28 5.30 -465.95 -2.47 -26.75 16 9 C 0.56 25.96 7.77 86.80 0.67 26.63 16 10 O -0.59 -31.54 16.33 -3.86 -0.06 -31.60 16 11 C -0.14 -6.78 5.87 -20.13 -0.12 -6.90 16 12 C -0.20 -8.40 9.55 22.70 0.22 -8.18 16 13 C -0.09 -3.73 10.01 22.17 0.22 -3.51 16 14 C -0.22 -10.53 9.78 22.77 0.22 -10.31 16 15 C 0.07 3.78 5.59 -21.32 -0.12 3.66 16 16 C -0.50 -27.27 9.04 23.47 0.21 -27.06 16 17 H 0.09 4.47 7.93 -2.91 -0.02 4.44 16 18 C 0.03 1.63 5.08 85.25 0.43 2.06 16 19 N -0.82 -46.50 11.00 21.82 0.24 -46.26 16 20 Si 0.98 39.92 29.61 68.60 2.03 41.95 16 21 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 23 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 24 C -0.14 -7.76 8.27 23.01 0.19 -7.57 16 25 C -0.10 -1.42 4.12 30.59 0.13 -1.30 16 26 C -0.10 -1.38 2.80 -10.79 -0.03 -1.41 16 27 C -0.15 -1.74 9.19 71.98 0.66 -1.08 16 28 C -0.15 -1.75 8.85 71.98 0.64 -1.12 16 29 H 0.05 0.97 8.11 -2.39 -0.02 0.95 16 30 H 0.14 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 1.85 7.67 -2.39 -0.02 1.83 16 33 H 0.09 2.49 6.25 -2.39 -0.01 2.47 16 34 H 0.41 11.68 6.25 -92.71 -0.58 11.10 16 35 H 0.13 4.13 6.38 -2.91 -0.02 4.11 16 36 H 0.14 4.38 8.06 -2.91 -0.02 4.35 16 37 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 38 H 0.29 15.05 8.30 -92.71 -0.77 14.28 16 39 H 0.10 6.30 5.66 -2.91 -0.02 6.28 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.07 1.12 6.22 -2.39 -0.01 1.10 16 43 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.06 0.69 6.74 -2.39 -0.02 0.67 16 Total: -1.00 -75.38 395.24 5.31 -70.07 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: 0.39 Total: 37.42 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 5.37 Total: -20.58 kcal Atomic # 7 Polarization: -70.78 SS G_CDS: -2.23 Total: -73.01 kcal Atomic # 8 Polarization: -55.60 SS G_CDS: -0.26 Total: -55.85 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -75.38 5.31 -70.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172642981.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.988 kcal (2) G-P(sol) polarization free energy of solvation -75.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds