Wall clock time and date at job start Tue Mar 31 2020 17:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47061 * 2 1 4 4 N 1.46491 * 109.47217 * 59.99707 * 3 2 1 5 5 C 1.34774 * 120.00340 * 179.97438 * 4 3 2 6 6 O 1.21594 * 119.99868 * 0.02562 * 5 4 3 7 7 C 1.47531 * 120.00459 * 180.02562 * 5 4 3 8 8 C 1.39668 * 120.19586 * 0.02562 * 7 5 4 9 9 C 1.37829 * 119.91626 * 179.97438 * 8 7 5 10 10 C 1.38570 * 120.32671 * 0.02562 * 9 8 7 11 11 C 1.38022 * 120.40099 * 359.97438 * 10 9 8 12 12 C 1.38833 * 120.07398 * 359.73707 * 11 10 9 13 13 O 1.35524 * 120.16656 * 180.27655 * 12 11 10 14 14 C 1.34810 * 116.99688 * 354.40155 * 13 12 11 15 15 H 1.08005 * 120.00383 * 5.06859 * 14 13 12 16 16 C 1.38697 * 120.00041 * 185.06026 * 14 13 12 17 17 N 1.31519 * 119.99807 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99917 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47343 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47103 * 120.00708 * 18 16 14 21 21 H 1.48507 * 109.47142 * 239.99909 * 18 16 14 22 22 C 1.52999 * 109.47167 * 119.99991 * 2 1 3 23 23 C 1.52994 * 109.47080 * 59.99718 * 22 2 1 24 24 C 1.53003 * 109.47122 * 60.00296 * 23 22 2 25 25 C 1.52999 * 109.46901 * 299.99813 * 24 23 22 26 26 C 1.53003 * 109.47112 * 240.00139 * 2 1 3 27 27 H 1.09000 * 109.47279 * 59.99799 * 26 2 1 28 28 O 1.42900 * 109.46799 * 179.97438 * 26 2 1 29 29 H 1.09003 * 109.46803 * 300.00279 * 1 2 3 30 30 H 1.09000 * 109.47212 * 60.00103 * 1 2 3 31 31 H 1.08994 * 109.47254 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46908 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47023 * 300.00013 * 3 2 1 34 34 H 0.97000 * 120.00215 * 0.02562 * 4 3 2 35 35 H 1.07994 * 120.04001 * 359.97438 * 8 7 5 36 36 H 1.08002 * 119.83352 * 180.02562 * 9 8 7 37 37 H 1.07998 * 119.79924 * 179.97438 * 10 9 8 38 38 H 1.08000 * 119.96637 * 180.02562 * 11 10 9 39 39 H 0.96998 * 119.99526 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.47038 * 299.99586 * 22 2 1 41 41 H 1.09003 * 109.47143 * 180.02562 * 22 2 1 42 42 H 1.08994 * 109.47444 * 300.00081 * 23 22 2 43 43 H 1.09000 * 109.46980 * 180.02562 * 23 22 2 44 44 H 1.09002 * 109.46963 * 179.97438 * 24 23 22 45 45 H 1.09003 * 109.46951 * 59.99599 * 24 23 22 46 46 H 1.09003 * 109.46774 * 179.97438 * 25 24 23 47 47 H 1.08994 * 109.47049 * 299.99837 * 25 24 23 48 48 H 0.96705 * 113.99120 * 179.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5517 2.1332 1.1961 5 6 1.8776 3.4233 1.4096 6 8 2.5767 4.0143 0.6093 7 6 1.3863 4.1187 2.6145 8 6 0.5835 3.4438 3.5368 9 6 0.1280 4.0988 4.6607 10 6 0.4622 5.4255 4.8809 11 6 1.2547 6.1053 3.9782 12 6 1.7275 5.4599 2.8436 13 8 2.5105 6.1239 1.9588 14 6 2.6991 7.4408 2.1767 15 1 2.3035 7.9027 3.0693 16 6 3.4013 8.2027 1.2547 17 7 3.8827 7.6405 0.1676 18 14 3.6633 10.0274 1.5571 19 1 3.0281 10.4123 2.8430 20 1 5.1188 10.3150 1.6188 21 1 3.0517 10.8055 0.4498 22 6 2.0400 -0.7212 1.2492 23 6 1.5300 -2.1637 1.2493 24 6 2.0400 -2.8850 0.0000 25 6 1.5300 -2.1637 -1.2492 26 6 2.0400 -0.7212 -1.2493 27 1 1.6767 -0.2074 -2.1393 28 8 3.4690 -0.7207 -1.2495 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 0.9943 1.6617 1.8348 35 1 0.3199 2.4099 3.3695 36 1 -0.4923 3.5755 5.3732 37 1 0.1003 5.9306 5.7642 38 1 1.5112 7.1390 4.1570 39 1 4.3735 8.1734 -0.4773 40 1 1.6767 -0.2073 2.1392 41 1 3.1301 -0.7208 1.2495 42 1 0.4400 -2.1637 1.2493 43 1 1.8930 -2.6773 2.1395 44 1 1.6770 -3.9128 0.0003 45 1 3.1300 -2.8849 0.0000 46 1 1.8937 -2.6774 -2.1392 47 1 0.4400 -2.1638 -1.2492 48 1 3.8623 -1.1627 -2.0145 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178270344.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:40 Heat of formation + Delta-G solvation = -98.425132 kcal Electronic energy + Delta-G solvation = -29408.570989 eV Core-core repulsion = 25428.701043 eV Total energy + Delta-G solvation = -3979.869946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.38965 -39.36609 -37.86635 -36.28936 -35.64878 -34.38231 -32.31257 -31.91527 -30.28684 -30.21063 -28.88094 -26.89945 -25.77137 -25.21698 -23.15332 -22.61153 -21.56671 -21.00154 -19.76254 -18.56193 -18.00282 -17.62687 -17.05853 -16.24211 -15.78293 -15.35272 -15.06047 -14.77278 -14.60448 -14.42261 -14.09106 -14.03286 -13.70320 -13.67051 -13.28858 -13.08758 -12.90970 -12.68541 -12.59576 -12.46479 -12.14792 -11.88078 -11.71583 -11.68548 -11.49764 -11.28012 -11.13239 -11.08178 -10.88693 -10.76453 -10.70247 -10.41943 -10.36180 -10.11623 -9.80962 -9.51828 -8.84974 -8.76146 -8.41402 -8.21577 -7.26663 -6.40538 -4.00496 1.76771 2.35420 3.14062 3.14799 3.20606 3.78269 3.83601 3.96551 4.02160 4.45435 4.50624 4.66010 4.70252 4.88848 4.96255 5.08027 5.11071 5.13667 5.21437 5.22408 5.36071 5.45442 5.48808 5.50735 5.57829 5.62577 5.67865 5.74084 5.78023 5.91150 5.93384 5.98626 6.02118 6.09517 6.14867 6.15888 6.19835 6.32983 6.44871 6.60126 6.73757 6.95438 7.07724 7.10213 7.27898 7.33228 7.55475 7.73328 7.96342 8.22738 8.99095 9.20592 9.72323 10.73362 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.003052 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.799848 B = 9171.157495 C =10610.168688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.061 4.061 3 C 0.139 3.861 4 N -0.741 5.741 5 C 0.552 3.448 6 O -0.501 6.501 7 C -0.225 4.225 8 C -0.039 4.039 9 C -0.231 4.231 10 C -0.052 4.052 11 C -0.238 4.238 12 C 0.189 3.811 13 O -0.124 6.124 14 C -0.404 4.404 15 H 0.094 0.906 16 C 0.044 3.956 17 N -0.832 5.832 18 Si 0.941 3.059 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.106 4.106 23 C -0.120 4.120 24 C -0.114 4.114 25 C -0.152 4.152 26 C 0.118 3.882 27 H 0.056 0.944 28 O -0.557 6.557 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.389 0.611 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.131 0.869 39 H 0.270 0.730 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.129 -19.067 0.550 20.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.061 4.061 3 C 0.015 3.985 4 N -0.398 5.398 5 C 0.341 3.659 6 O -0.375 6.375 7 C -0.230 4.230 8 C -0.058 4.058 9 C -0.250 4.250 10 C -0.070 4.070 11 C -0.257 4.257 12 C 0.130 3.870 13 O -0.022 6.022 14 C -0.479 4.479 15 H 0.111 0.889 16 C -0.164 4.164 17 N -0.463 5.463 18 Si 0.765 3.235 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.143 4.143 23 C -0.158 4.158 24 C -0.152 4.152 25 C -0.190 4.190 26 C 0.058 3.942 27 H 0.074 0.926 28 O -0.362 6.362 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.225 0.775 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.092 0.908 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -6.396 -18.264 0.045 19.351 hybrid contribution -0.187 0.348 0.016 0.395 sum -6.582 -17.916 0.061 19.087 Atomic orbital electron populations 1.21992 0.93671 1.02045 1.02726 1.20730 0.95564 0.94733 0.95096 1.21141 0.99796 0.89380 0.88188 1.45931 1.55851 1.12509 1.25521 1.18217 0.80660 0.80835 0.86139 1.90949 1.35823 1.65067 1.45699 1.18896 1.10849 0.93899 0.99357 1.20738 0.94441 0.97545 0.93077 1.20448 1.08552 0.95800 1.00209 1.20882 0.94948 0.94085 0.97120 1.21157 1.05947 1.01755 0.96889 1.19282 0.88081 0.90621 0.89051 1.84182 1.53160 1.22165 1.42707 1.21540 1.37021 0.81406 1.07973 0.88860 1.25385 0.95989 1.00291 0.94697 1.70146 1.31272 1.36303 1.08621 0.85668 0.78544 0.80532 0.78769 1.18992 1.20039 1.20040 1.21531 1.01901 0.94600 0.96315 1.21579 1.00633 0.95883 0.97692 1.21429 1.01473 0.98071 0.94211 1.22282 1.01757 0.96396 0.98569 1.21670 0.81254 0.94228 0.97009 0.92597 1.86575 1.19021 1.81170 1.49397 0.91863 0.92212 0.91779 0.90925 0.92223 0.77527 0.87246 0.87340 0.87236 0.85108 0.91953 0.91981 0.90722 0.91897 0.92087 0.92500 0.91353 0.91898 0.90773 0.77937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 7.61 37.16 0.28 -1.10 16 2 C -0.06 -0.67 0.36 -154.50 -0.06 -0.72 16 3 C 0.14 2.16 4.42 -4.04 -0.02 2.15 16 4 N -0.74 -12.49 4.91 -61.35 -0.30 -12.79 16 5 C 0.55 12.58 7.76 -12.47 -0.10 12.49 16 6 O -0.50 -14.24 15.17 -16.57 -0.25 -14.49 16 7 C -0.23 -5.02 5.89 -104.81 -0.62 -5.64 16 8 C -0.04 -0.69 9.54 -39.20 -0.37 -1.06 16 9 C -0.23 -3.86 10.02 -39.61 -0.40 -4.25 16 10 C -0.05 -0.93 10.03 -39.54 -0.40 -1.33 16 11 C -0.24 -5.22 9.16 -39.44 -0.36 -5.58 16 12 C 0.19 4.81 6.66 -38.60 -0.26 4.55 16 13 O -0.12 -3.74 7.84 -21.06 -0.16 -3.90 16 14 C -0.40 -11.62 9.49 30.90 0.29 -11.33 16 15 H 0.09 2.44 5.21 -52.48 -0.27 2.17 16 16 C 0.04 1.25 5.49 -17.52 -0.10 1.15 16 17 N -0.83 -25.51 13.67 55.48 0.76 -24.75 16 18 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 22 C -0.11 -1.12 4.41 -26.73 -0.12 -1.24 16 23 C -0.12 -1.01 5.65 -26.73 -0.15 -1.16 16 24 C -0.11 -0.89 5.78 -26.73 -0.15 -1.04 16 25 C -0.15 -1.13 5.36 -26.73 -0.14 -1.27 16 26 C 0.12 1.13 2.73 -26.73 -0.07 1.06 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 O -0.56 -5.88 11.30 -35.23 -0.40 -6.28 16 29 H 0.06 0.60 6.86 -51.93 -0.36 0.24 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.49 4.81 -51.93 -0.25 0.24 16 32 H 0.07 1.32 7.68 -51.93 -0.40 0.92 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.39 5.33 4.19 -40.82 -0.17 5.16 16 35 H 0.11 1.49 6.40 -52.49 -0.34 1.16 16 36 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.13 2.83 5.64 -52.49 -0.30 2.54 16 39 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.06 0.66 6.86 -51.93 -0.36 0.30 16 41 H 0.07 0.93 7.68 -51.93 -0.40 0.53 16 42 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.59 7.68 -51.93 -0.40 0.19 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.51 6.43 -51.93 -0.33 0.18 16 48 H 0.37 2.43 9.08 45.56 0.41 2.85 16 LS Contribution 372.35 15.07 5.61 5.61 Total: -1.00 -36.01 372.35 -8.51 -44.52 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -6.01 Total: 10.59 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -2.73 Total: -14.33 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.46 Total: -37.54 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.81 Total: -24.67 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.01 -8.51 -44.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178270344.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.906 kcal (2) G-P(sol) polarization free energy of solvation -36.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds