Wall clock time and date at job start Tue Mar 31 2020 17:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47061 * 2 1 4 4 N 1.46491 * 109.47217 * 59.99707 * 3 2 1 5 5 C 1.34774 * 120.00340 * 179.97438 * 4 3 2 6 6 O 1.21594 * 119.99868 * 0.02562 * 5 4 3 7 7 C 1.47531 * 120.00459 * 180.02562 * 5 4 3 8 8 C 1.39668 * 120.19586 * 0.02562 * 7 5 4 9 9 C 1.37829 * 119.91626 * 179.97438 * 8 7 5 10 10 C 1.38570 * 120.32671 * 0.02562 * 9 8 7 11 11 C 1.38022 * 120.40099 * 359.97438 * 10 9 8 12 12 C 1.38833 * 120.07398 * 359.73707 * 11 10 9 13 13 O 1.35524 * 120.16656 * 180.27655 * 12 11 10 14 14 C 1.34810 * 116.99688 * 354.40155 * 13 12 11 15 15 H 1.08005 * 120.00383 * 5.06859 * 14 13 12 16 16 C 1.38697 * 120.00041 * 185.06026 * 14 13 12 17 17 N 1.31519 * 119.99807 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99917 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47343 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47103 * 120.00708 * 18 16 14 21 21 H 1.48507 * 109.47142 * 239.99909 * 18 16 14 22 22 C 1.52999 * 109.47167 * 119.99991 * 2 1 3 23 23 C 1.52994 * 109.47080 * 59.99718 * 22 2 1 24 24 C 1.53003 * 109.47122 * 60.00296 * 23 22 2 25 25 C 1.52999 * 109.46901 * 299.99813 * 24 23 22 26 26 C 1.53003 * 109.47112 * 240.00139 * 2 1 3 27 27 H 1.09000 * 109.47279 * 59.99799 * 26 2 1 28 28 O 1.42900 * 109.46799 * 179.97438 * 26 2 1 29 29 H 1.09003 * 109.46803 * 300.00279 * 1 2 3 30 30 H 1.09000 * 109.47212 * 60.00103 * 1 2 3 31 31 H 1.08994 * 109.47254 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46908 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47023 * 300.00013 * 3 2 1 34 34 H 0.97000 * 120.00215 * 0.02562 * 4 3 2 35 35 H 1.07994 * 120.04001 * 359.97438 * 8 7 5 36 36 H 1.08002 * 119.83352 * 180.02562 * 9 8 7 37 37 H 1.07998 * 119.79924 * 179.97438 * 10 9 8 38 38 H 1.08000 * 119.96637 * 180.02562 * 11 10 9 39 39 H 0.96998 * 119.99526 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.47038 * 299.99586 * 22 2 1 41 41 H 1.09003 * 109.47143 * 180.02562 * 22 2 1 42 42 H 1.08994 * 109.47444 * 300.00081 * 23 22 2 43 43 H 1.09000 * 109.46980 * 180.02562 * 23 22 2 44 44 H 1.09002 * 109.46963 * 179.97438 * 24 23 22 45 45 H 1.09003 * 109.46951 * 59.99599 * 24 23 22 46 46 H 1.09003 * 109.46774 * 179.97438 * 25 24 23 47 47 H 1.08994 * 109.47049 * 299.99837 * 25 24 23 48 48 H 0.96705 * 113.99120 * 179.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5517 2.1332 1.1961 5 6 1.8776 3.4233 1.4096 6 8 2.5767 4.0143 0.6093 7 6 1.3863 4.1187 2.6145 8 6 0.5835 3.4438 3.5368 9 6 0.1280 4.0988 4.6607 10 6 0.4622 5.4255 4.8809 11 6 1.2547 6.1053 3.9782 12 6 1.7275 5.4599 2.8436 13 8 2.5105 6.1239 1.9588 14 6 2.6991 7.4408 2.1767 15 1 2.3035 7.9027 3.0693 16 6 3.4013 8.2027 1.2547 17 7 3.8827 7.6405 0.1676 18 14 3.6633 10.0274 1.5571 19 1 3.0281 10.4123 2.8430 20 1 5.1188 10.3150 1.6188 21 1 3.0517 10.8055 0.4498 22 6 2.0400 -0.7212 1.2492 23 6 1.5300 -2.1637 1.2493 24 6 2.0400 -2.8850 0.0000 25 6 1.5300 -2.1637 -1.2492 26 6 2.0400 -0.7212 -1.2493 27 1 1.6767 -0.2074 -2.1393 28 8 3.4690 -0.7207 -1.2495 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 0.9943 1.6617 1.8348 35 1 0.3199 2.4099 3.3695 36 1 -0.4923 3.5755 5.3732 37 1 0.1003 5.9306 5.7642 38 1 1.5112 7.1390 4.1570 39 1 4.3735 8.1734 -0.4773 40 1 1.6767 -0.2073 2.1392 41 1 3.1301 -0.7208 1.2495 42 1 0.4400 -2.1637 1.2493 43 1 1.8930 -2.6773 2.1395 44 1 1.6770 -3.9128 0.0003 45 1 3.1300 -2.8849 0.0000 46 1 1.8937 -2.6774 -2.1392 47 1 0.4400 -2.1638 -1.2492 48 1 3.8623 -1.1627 -2.0145 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178270344.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:39 Heat of formation + Delta-G solvation = -124.871336 kcal Electronic energy + Delta-G solvation = -29409.717783 eV Core-core repulsion = 25428.701043 eV Total energy + Delta-G solvation = -3981.016740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.54406 -40.87904 -39.59410 -38.02701 -36.66978 -35.56661 -34.33247 -33.20162 -31.72360 -30.97100 -30.57243 -27.91679 -27.38171 -26.69005 -24.52940 -23.58038 -23.06460 -22.04628 -21.42288 -19.86133 -19.54513 -19.16039 -17.96691 -17.82314 -17.12118 -16.48420 -16.33015 -16.25390 -16.09611 -15.71929 -15.67555 -15.43726 -15.26874 -15.19222 -14.49449 -14.33164 -14.18301 -14.00789 -13.71643 -13.55454 -13.43925 -13.20535 -13.00341 -12.74194 -12.69548 -12.54828 -12.45148 -12.37198 -12.28198 -12.09778 -11.90887 -11.60807 -11.43000 -11.10189 -10.91880 -10.84980 -10.62024 -10.54984 -10.09307 -9.77723 -9.03829 -8.44849 -6.16177 0.12210 0.72380 1.31433 1.42479 1.51769 2.10286 2.15311 2.28475 2.87497 3.22491 3.27027 3.46486 3.57952 3.75790 3.87250 3.96875 4.07431 4.12202 4.18879 4.28683 4.34037 4.35971 4.50041 4.51835 4.59355 4.63379 4.64713 4.75027 4.83255 4.88660 4.93774 4.99613 5.04792 5.07623 5.12959 5.13998 5.21249 5.27289 5.31638 5.38650 5.44768 5.48084 5.55919 5.61127 5.66244 5.69193 5.95985 6.16959 6.69314 6.94121 6.94434 7.49168 7.80814 8.76071 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.003052 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.799848 B = 9171.157495 C =10610.168688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.053 4.053 3 C 0.141 3.859 4 N -0.712 5.712 5 C 0.544 3.456 6 O -0.572 6.572 7 C -0.245 4.245 8 C -0.030 4.030 9 C -0.199 4.199 10 C -0.040 4.040 11 C -0.257 4.257 12 C 0.149 3.851 13 O -0.190 6.190 14 C -0.427 4.427 15 H 0.108 0.892 16 C -0.024 4.024 17 N -0.906 5.906 18 Si 1.024 2.976 19 H -0.244 1.244 20 H -0.269 1.269 21 H -0.269 1.269 22 C -0.105 4.105 23 C -0.116 4.116 24 C -0.114 4.114 25 C -0.143 4.143 26 C 0.113 3.887 27 H 0.053 0.947 28 O -0.581 6.581 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.409 0.591 35 H 0.157 0.843 36 H 0.166 0.834 37 H 0.155 0.845 38 H 0.123 0.877 39 H 0.270 0.730 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.054 0.946 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.740 -21.802 3.760 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.053 4.053 3 C 0.017 3.983 4 N -0.368 5.368 5 C 0.334 3.666 6 O -0.451 6.451 7 C -0.250 4.250 8 C -0.049 4.049 9 C -0.217 4.217 10 C -0.058 4.058 11 C -0.276 4.276 12 C 0.094 3.906 13 O -0.093 6.093 14 C -0.503 4.503 15 H 0.125 0.875 16 C -0.223 4.223 17 N -0.542 5.542 18 Si 0.842 3.158 19 H -0.167 1.167 20 H -0.194 1.194 21 H -0.194 1.194 22 C -0.143 4.143 23 C -0.153 4.153 24 C -0.152 4.152 25 C -0.181 4.181 26 C 0.053 3.947 27 H 0.071 0.929 28 O -0.389 6.389 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.248 0.752 35 H 0.175 0.825 36 H 0.184 0.816 37 H 0.173 0.827 38 H 0.141 0.859 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.072 0.928 46 H 0.096 0.904 47 H 0.106 0.894 48 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -10.079 -21.096 3.326 23.616 hybrid contribution 0.720 0.857 -0.740 1.341 sum -9.359 -20.240 2.586 22.448 Atomic orbital electron populations 1.22015 0.91655 1.03876 1.02713 1.20725 0.97034 0.91084 0.96493 1.21180 0.97898 0.92468 0.86775 1.45653 1.54529 1.10617 1.25964 1.18615 0.79865 0.82212 0.85864 1.90927 1.39126 1.67035 1.48055 1.19313 1.11933 0.93389 1.00353 1.21273 0.92180 0.99506 0.91921 1.21180 1.05925 0.94995 0.99584 1.21441 0.92454 0.94802 0.97065 1.21305 1.07368 1.01948 0.97028 1.20093 0.88646 0.92074 0.89825 1.84188 1.56809 1.22823 1.45478 1.22093 1.37501 0.81957 1.08755 0.87511 1.26797 0.95396 1.06016 0.94095 1.70345 1.34455 1.38671 1.10743 0.84485 0.78702 0.73113 0.79501 1.16731 1.19391 1.19353 1.21508 1.00306 0.96604 0.95838 1.21571 1.01593 0.93793 0.98332 1.21440 1.00719 0.99036 0.93989 1.22229 1.02439 0.94209 0.99220 1.21763 0.80908 0.95966 0.96028 0.92912 1.86547 1.19895 1.81800 1.50621 0.91588 0.92610 0.88962 0.94342 0.94220 0.75202 0.82514 0.81640 0.82716 0.85897 0.92075 0.91819 0.93436 0.90087 0.91472 0.90632 0.92767 0.90369 0.89364 0.76134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 7.61 71.98 0.55 -1.79 16 2 C -0.05 -1.12 0.36 -52.18 -0.02 -1.14 16 3 C 0.14 4.66 4.42 86.38 0.38 5.04 16 4 N -0.71 -24.40 4.91 -466.28 -2.29 -26.69 16 5 C 0.54 26.20 7.76 86.69 0.67 26.87 16 6 O -0.57 -35.72 15.17 16.88 0.26 -35.47 16 7 C -0.25 -11.06 5.89 -19.99 -0.12 -11.18 16 8 C -0.03 -0.94 9.54 22.52 0.21 -0.73 16 9 C -0.20 -5.37 10.02 22.25 0.22 -5.14 16 10 C -0.04 -1.25 10.03 22.30 0.22 -1.02 16 11 C -0.26 -11.23 9.16 22.36 0.20 -11.03 16 12 C 0.15 7.90 6.66 22.91 0.15 8.05 16 13 O -0.19 -12.48 7.84 0.84 0.01 -12.48 16 14 C -0.43 -26.46 9.49 67.93 0.64 -25.82 16 15 H 0.11 5.92 5.21 -2.91 -0.02 5.91 16 16 C -0.02 -1.46 5.49 84.85 0.47 -1.00 16 17 N -0.91 -60.74 13.67 21.62 0.30 -60.44 16 18 Si 1.02 45.22 29.55 68.60 2.03 47.24 16 19 H -0.24 -9.72 7.11 99.48 0.71 -9.01 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 C -0.10 -2.08 4.41 30.59 0.13 -1.94 16 23 C -0.12 -1.56 5.65 30.59 0.17 -1.39 16 24 C -0.11 -1.45 5.78 30.59 0.18 -1.27 16 25 C -0.14 -1.73 5.36 30.59 0.16 -1.57 16 26 C 0.11 2.10 2.73 30.60 0.08 2.19 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 O -0.58 -12.75 11.30 -148.98 -1.68 -14.44 16 29 H 0.07 1.02 6.86 -2.39 -0.02 1.00 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 1.00 4.81 -2.39 -0.01 0.99 16 32 H 0.04 1.54 7.68 -2.39 -0.02 1.52 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.41 10.38 4.19 -92.71 -0.39 10.00 16 35 H 0.16 3.33 6.40 -2.91 -0.02 3.31 16 36 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 37 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 38 H 0.12 5.44 5.64 -2.91 -0.02 5.42 16 39 H 0.27 16.53 8.31 -92.71 -0.77 15.76 16 40 H 0.06 1.19 6.86 -2.39 -0.02 1.18 16 41 H 0.05 1.20 7.68 -2.39 -0.02 1.18 16 42 H 0.08 0.84 6.43 -2.39 -0.02 0.82 16 43 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 45 H 0.05 0.85 7.68 -2.39 -0.02 0.84 16 46 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.09 0.85 6.43 -2.39 -0.02 0.84 16 48 H 0.39 5.25 9.08 -74.05 -0.67 4.58 16 Total: -1.00 -93.06 372.35 2.89 -90.18 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: -0.05 Total: 34.95 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 4.33 Total: -22.87 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -1.99 Total: -87.13 kcal Atomic # 8 Polarization: -60.96 SS G_CDS: -1.42 Total: -62.38 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -93.06 2.89 -90.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178270344.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.693 kcal (2) G-P(sol) polarization free energy of solvation -93.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds