Wall clock time and date at job start Tue Mar 31 2020 17:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47265 * 2 1 4 4 N 1.46503 * 109.46953 * 300.00568 * 3 2 1 5 5 C 1.34778 * 119.99723 * 179.97438 * 4 3 2 6 6 O 1.21595 * 120.00275 * 0.02562 * 5 4 3 7 7 C 1.47534 * 119.99960 * 179.97438 * 5 4 3 8 8 C 1.39664 * 120.19923 * 359.72694 * 7 5 4 9 9 C 1.37828 * 119.92124 * 179.72404 * 8 7 5 10 10 C 1.38572 * 120.32223 * 0.57371 * 9 8 7 11 11 C 1.38025 * 120.40196 * 359.70008 * 10 9 8 12 12 C 1.38835 * 120.07276 * 0.02562 * 11 10 9 13 13 O 1.35516 * 120.16213 * 180.02562 * 12 11 10 14 14 C 1.34813 * 117.00185 * 354.39658 * 13 12 11 15 15 H 1.08000 * 119.99955 * 5.06510 * 14 13 12 16 16 C 1.38693 * 120.00348 * 185.06203 * 14 13 12 17 17 N 1.31521 * 120.00127 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00173 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47536 * 90.00152 * 18 16 14 20 20 H 1.48505 * 109.47340 * 210.00344 * 18 16 14 21 21 H 1.48503 * 109.47128 * 330.00163 * 18 16 14 22 22 C 1.53003 * 109.46882 * 240.00489 * 2 1 3 23 23 C 1.53004 * 109.47125 * 299.99815 * 22 2 1 24 24 C 1.53000 * 109.46725 * 300.00126 * 23 22 2 25 25 C 1.52993 * 109.47420 * 60.00055 * 24 23 22 26 26 C 1.52997 * 109.47665 * 120.00368 * 2 1 3 27 27 H 1.09003 * 109.46671 * 299.99986 * 26 2 1 28 28 O 1.42896 * 109.47400 * 179.97438 * 26 2 1 29 29 H 1.09002 * 109.46346 * 299.99686 * 1 2 3 30 30 H 1.08993 * 109.47274 * 59.99299 * 1 2 3 31 31 H 1.08997 * 109.46837 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46987 * 60.00066 * 3 2 1 33 33 H 1.08999 * 109.47410 * 180.02562 * 3 2 1 34 34 H 0.96998 * 120.00494 * 359.97438 * 4 3 2 35 35 H 1.07998 * 120.03716 * 359.97438 * 8 7 5 36 36 H 1.07998 * 119.84026 * 180.27643 * 9 8 7 37 37 H 1.07996 * 119.79823 * 179.71742 * 10 9 8 38 38 H 1.07994 * 119.96632 * 180.02562 * 11 10 9 39 39 H 0.96998 * 120.00292 * 180.02562 * 17 16 14 40 40 H 1.09006 * 109.47311 * 59.99480 * 22 2 1 41 41 H 1.08999 * 109.47338 * 179.97438 * 22 2 1 42 42 H 1.09004 * 109.46884 * 59.99983 * 23 22 2 43 43 H 1.08992 * 109.47082 * 179.97438 * 23 22 2 44 44 H 1.09008 * 109.46879 * 180.02562 * 24 23 22 45 45 H 1.09004 * 109.47323 * 299.99588 * 24 23 22 46 46 H 1.08996 * 109.47487 * 180.02562 * 25 24 23 47 47 H 1.09004 * 109.47254 * 59.99491 * 25 24 23 48 48 H 0.96699 * 114.00169 * 179.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5516 2.1331 -1.1961 5 6 1.8768 3.4236 -1.4091 6 8 2.5759 4.0145 -0.6088 7 6 1.3854 4.1190 -2.6139 8 6 0.5877 3.4424 -3.5394 9 6 0.1270 4.0992 -4.6601 10 6 0.4612 5.4259 -4.8803 11 6 1.2533 6.1058 -3.9774 12 6 1.7218 5.4619 -2.8400 13 8 2.4992 6.1279 -1.9520 14 6 2.8783 7.3775 -2.2870 15 1 2.4961 7.8346 -3.1878 16 6 3.7590 8.0763 -1.4748 17 7 4.2248 7.5197 -0.3781 18 14 4.2836 9.8080 -1.9386 19 1 3.3428 10.7878 -1.3386 20 1 5.6552 10.0629 -1.4294 21 1 4.2701 9.9502 -3.4168 22 6 2.0400 -0.7212 -1.2493 23 6 1.5300 -2.1637 -1.2494 24 6 2.0401 -2.8850 -0.0002 25 6 1.5301 -2.1638 1.2490 26 6 2.0401 -0.7213 1.2491 27 1 1.6768 -0.2075 2.1391 28 8 3.4691 -0.7218 1.2488 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 0.9942 1.6617 -1.8348 35 1 0.3288 2.4069 -3.3749 36 1 -0.4934 3.5760 -5.3726 37 1 0.0993 5.9310 -5.7636 38 1 1.5091 7.1397 -4.1557 39 1 4.8405 8.0085 0.1902 40 1 1.6765 -0.2073 -2.1393 41 1 3.1300 -0.7208 -1.2497 42 1 0.4399 -2.1637 -1.2494 43 1 1.8929 -2.6773 -2.1396 44 1 1.6771 -3.9128 -0.0005 45 1 3.1301 -2.8850 -0.0003 46 1 1.8939 -2.6774 2.1390 47 1 0.4401 -2.1638 1.2491 48 1 3.8625 -1.1632 2.0139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178270355.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:44 Heat of formation + Delta-G solvation = -98.348583 kcal Electronic energy + Delta-G solvation = -29410.690759 eV Core-core repulsion = 25430.824132 eV Total energy + Delta-G solvation = -3979.866627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.38921 -39.36555 -37.86579 -36.28861 -35.64787 -34.38090 -32.31180 -31.91494 -30.28592 -30.20906 -28.87987 -26.90012 -25.77030 -25.21550 -23.15241 -22.61039 -21.56571 -21.00054 -19.76203 -18.56128 -18.00133 -17.62584 -17.05857 -16.23991 -15.78157 -15.35107 -15.06376 -14.77152 -14.58578 -14.44453 -14.08703 -14.02803 -13.73539 -13.64106 -13.28629 -13.08548 -12.91325 -12.69707 -12.59486 -12.43746 -12.15860 -11.88109 -11.71512 -11.68254 -11.49301 -11.27429 -11.13141 -11.08408 -10.87628 -10.76426 -10.70774 -10.43440 -10.36043 -10.11523 -9.80880 -9.52137 -8.84391 -8.76192 -8.41377 -8.21487 -7.26555 -6.40261 -4.00367 1.76869 2.35652 3.14077 3.15361 3.20007 3.78244 3.83709 3.96763 4.02222 4.45491 4.50751 4.66110 4.70336 4.88904 4.96307 5.07976 5.11148 5.13741 5.21578 5.22694 5.36077 5.45472 5.48814 5.50824 5.57917 5.62480 5.67913 5.74081 5.78079 5.91178 5.93384 5.98730 6.02275 6.09604 6.14916 6.15904 6.20016 6.33000 6.45092 6.60204 6.73866 6.95411 7.07732 7.10167 7.27976 7.33122 7.55733 7.73431 7.96434 8.22788 8.99184 9.20626 9.72319 10.73543 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015555 B = 0.003061 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.677640 B = 9144.264499 C =10579.692154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.061 4.061 3 C 0.139 3.861 4 N -0.742 5.742 5 C 0.552 3.448 6 O -0.501 6.501 7 C -0.225 4.225 8 C -0.039 4.039 9 C -0.231 4.231 10 C -0.052 4.052 11 C -0.238 4.238 12 C 0.189 3.811 13 O -0.124 6.124 14 C -0.404 4.404 15 H 0.094 0.906 16 C 0.044 3.956 17 N -0.832 5.832 18 Si 0.940 3.060 19 H -0.272 1.272 20 H -0.276 1.276 21 H -0.266 1.266 22 C -0.106 4.106 23 C -0.120 4.120 24 C -0.114 4.114 25 C -0.152 4.152 26 C 0.118 3.882 27 H 0.056 0.944 28 O -0.557 6.557 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.389 0.611 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.131 0.869 39 H 0.271 0.729 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.500 -18.917 -0.293 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.061 4.061 3 C 0.015 3.985 4 N -0.398 5.398 5 C 0.342 3.658 6 O -0.375 6.375 7 C -0.230 4.230 8 C -0.058 4.058 9 C -0.250 4.250 10 C -0.070 4.070 11 C -0.258 4.258 12 C 0.130 3.870 13 O -0.022 6.022 14 C -0.480 4.480 15 H 0.111 0.889 16 C -0.163 4.163 17 N -0.464 5.464 18 Si 0.765 3.235 19 H -0.198 1.198 20 H -0.201 1.201 21 H -0.191 1.191 22 C -0.144 4.144 23 C -0.158 4.158 24 C -0.152 4.152 25 C -0.190 4.190 26 C 0.058 3.942 27 H 0.074 0.926 28 O -0.362 6.362 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.225 0.775 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.092 0.908 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -6.768 -18.113 0.218 19.338 hybrid contribution -0.073 0.309 -0.095 0.331 sum -6.841 -17.805 0.123 19.074 Atomic orbital electron populations 1.21991 0.93675 1.02046 1.02713 1.20729 0.95558 0.94737 0.95103 1.21146 0.99811 0.89377 0.88170 1.45936 1.55855 1.12500 1.25529 1.18218 0.80620 0.80846 0.86163 1.90949 1.35747 1.65146 1.45702 1.18892 1.11403 0.93185 0.99535 1.20737 0.94403 0.97552 0.93097 1.20447 1.08523 0.95815 1.00247 1.20882 0.94857 0.94139 0.97148 1.21155 1.05759 1.01678 0.97174 1.19281 0.89546 0.90002 0.88211 1.84179 1.54040 1.26805 1.37154 1.21490 1.27650 0.88593 1.10254 0.88914 1.25381 0.95653 1.00026 0.95275 1.70134 1.27885 1.37011 1.11322 0.85735 0.78369 0.80393 0.79037 1.19780 1.20146 1.19084 1.21534 1.01913 0.94597 0.96309 1.21580 1.00625 0.95886 0.97693 1.21428 1.01479 0.98068 0.94208 1.22283 1.01750 0.96403 0.98570 1.21668 0.81261 0.94226 0.97003 0.92599 1.86573 1.19011 1.81230 1.49340 0.92228 0.91859 0.91778 0.92232 0.90910 0.77526 0.87249 0.87342 0.87238 0.85116 0.91895 0.91980 0.90713 0.91902 0.92084 0.92504 0.91348 0.91899 0.90781 0.77936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 7.61 37.16 0.28 -1.09 16 2 C -0.06 -0.67 0.36 -154.51 -0.06 -0.72 16 3 C 0.14 2.16 4.42 -4.04 -0.02 2.15 16 4 N -0.74 -12.49 4.91 -61.34 -0.30 -12.79 16 5 C 0.55 12.59 7.76 -12.47 -0.10 12.49 16 6 O -0.50 -14.24 15.17 -16.57 -0.25 -14.49 16 7 C -0.23 -5.03 5.89 -104.81 -0.62 -5.64 16 8 C -0.04 -0.68 9.53 -39.20 -0.37 -1.06 16 9 C -0.23 -3.86 10.02 -39.61 -0.40 -4.26 16 10 C -0.05 -0.93 10.03 -39.54 -0.40 -1.33 16 11 C -0.24 -5.23 9.16 -39.44 -0.36 -5.59 16 12 C 0.19 4.81 6.66 -38.60 -0.26 4.55 16 13 O -0.12 -3.73 7.84 -21.04 -0.16 -3.89 16 14 C -0.40 -11.64 9.49 30.90 0.29 -11.35 16 15 H 0.09 2.42 5.21 -52.49 -0.27 2.15 16 16 C 0.04 1.26 5.49 -17.52 -0.10 1.16 16 17 N -0.83 -25.53 13.67 55.48 0.76 -24.77 16 18 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 C -0.11 -1.13 4.41 -26.73 -0.12 -1.24 16 23 C -0.12 -1.01 5.65 -26.73 -0.15 -1.16 16 24 C -0.11 -0.89 5.78 -26.73 -0.15 -1.05 16 25 C -0.15 -1.13 5.36 -26.73 -0.14 -1.27 16 26 C 0.12 1.14 2.74 -26.73 -0.07 1.06 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 O -0.56 -5.89 11.29 -35.23 -0.40 -6.29 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.60 6.86 -51.93 -0.36 0.24 16 31 H 0.06 0.49 4.81 -51.93 -0.25 0.24 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.32 7.68 -51.93 -0.40 0.92 16 34 H 0.39 5.34 4.19 -40.82 -0.17 5.17 16 35 H 0.11 1.49 6.40 -52.49 -0.34 1.16 16 36 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.13 2.82 5.64 -52.49 -0.30 2.53 16 39 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.06 0.66 6.86 -51.93 -0.36 0.30 16 41 H 0.07 0.94 7.68 -51.93 -0.40 0.54 16 42 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 45 H 0.07 0.59 7.68 -51.93 -0.40 0.20 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.51 6.43 -51.93 -0.33 0.18 16 48 H 0.37 2.44 9.08 45.56 0.41 2.86 16 LS Contribution 372.34 15.07 5.61 5.61 Total: -1.00 -36.01 372.34 -8.51 -44.52 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.01 Total: 10.64 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -2.73 Total: -14.35 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.46 Total: -37.57 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.81 Total: -24.68 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.01 -8.51 -44.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178270355.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.828 kcal (2) G-P(sol) polarization free energy of solvation -36.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds