Wall clock time and date at job start Tue Mar 31 2020 17:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47265 * 2 1 4 4 N 1.46503 * 109.46953 * 300.00568 * 3 2 1 5 5 C 1.34778 * 119.99723 * 179.97438 * 4 3 2 6 6 O 1.21595 * 120.00275 * 0.02562 * 5 4 3 7 7 C 1.47534 * 119.99960 * 179.97438 * 5 4 3 8 8 C 1.39664 * 120.19923 * 359.72694 * 7 5 4 9 9 C 1.37828 * 119.92124 * 179.72404 * 8 7 5 10 10 C 1.38572 * 120.32223 * 0.57371 * 9 8 7 11 11 C 1.38025 * 120.40196 * 359.70008 * 10 9 8 12 12 C 1.38835 * 120.07276 * 0.02562 * 11 10 9 13 13 O 1.35516 * 120.16213 * 180.02562 * 12 11 10 14 14 C 1.34813 * 117.00185 * 354.39658 * 13 12 11 15 15 H 1.08000 * 119.99955 * 5.06510 * 14 13 12 16 16 C 1.38693 * 120.00348 * 185.06203 * 14 13 12 17 17 N 1.31521 * 120.00127 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00173 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47536 * 90.00152 * 18 16 14 20 20 H 1.48505 * 109.47340 * 210.00344 * 18 16 14 21 21 H 1.48503 * 109.47128 * 330.00163 * 18 16 14 22 22 C 1.53003 * 109.46882 * 240.00489 * 2 1 3 23 23 C 1.53004 * 109.47125 * 299.99815 * 22 2 1 24 24 C 1.53000 * 109.46725 * 300.00126 * 23 22 2 25 25 C 1.52993 * 109.47420 * 60.00055 * 24 23 22 26 26 C 1.52997 * 109.47665 * 120.00368 * 2 1 3 27 27 H 1.09003 * 109.46671 * 299.99986 * 26 2 1 28 28 O 1.42896 * 109.47400 * 179.97438 * 26 2 1 29 29 H 1.09002 * 109.46346 * 299.99686 * 1 2 3 30 30 H 1.08993 * 109.47274 * 59.99299 * 1 2 3 31 31 H 1.08997 * 109.46837 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46987 * 60.00066 * 3 2 1 33 33 H 1.08999 * 109.47410 * 180.02562 * 3 2 1 34 34 H 0.96998 * 120.00494 * 359.97438 * 4 3 2 35 35 H 1.07998 * 120.03716 * 359.97438 * 8 7 5 36 36 H 1.07998 * 119.84026 * 180.27643 * 9 8 7 37 37 H 1.07996 * 119.79823 * 179.71742 * 10 9 8 38 38 H 1.07994 * 119.96632 * 180.02562 * 11 10 9 39 39 H 0.96998 * 120.00292 * 180.02562 * 17 16 14 40 40 H 1.09006 * 109.47311 * 59.99480 * 22 2 1 41 41 H 1.08999 * 109.47338 * 179.97438 * 22 2 1 42 42 H 1.09004 * 109.46884 * 59.99983 * 23 22 2 43 43 H 1.08992 * 109.47082 * 179.97438 * 23 22 2 44 44 H 1.09008 * 109.46879 * 180.02562 * 24 23 22 45 45 H 1.09004 * 109.47323 * 299.99588 * 24 23 22 46 46 H 1.08996 * 109.47487 * 180.02562 * 25 24 23 47 47 H 1.09004 * 109.47254 * 59.99491 * 25 24 23 48 48 H 0.96699 * 114.00169 * 179.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5516 2.1331 -1.1961 5 6 1.8768 3.4236 -1.4091 6 8 2.5759 4.0145 -0.6088 7 6 1.3854 4.1190 -2.6139 8 6 0.5877 3.4424 -3.5394 9 6 0.1270 4.0992 -4.6601 10 6 0.4612 5.4259 -4.8803 11 6 1.2533 6.1058 -3.9774 12 6 1.7218 5.4619 -2.8400 13 8 2.4992 6.1279 -1.9520 14 6 2.8783 7.3775 -2.2870 15 1 2.4961 7.8346 -3.1878 16 6 3.7590 8.0763 -1.4748 17 7 4.2248 7.5197 -0.3781 18 14 4.2836 9.8080 -1.9386 19 1 3.3428 10.7878 -1.3386 20 1 5.6552 10.0629 -1.4294 21 1 4.2701 9.9502 -3.4168 22 6 2.0400 -0.7212 -1.2493 23 6 1.5300 -2.1637 -1.2494 24 6 2.0401 -2.8850 -0.0002 25 6 1.5301 -2.1638 1.2490 26 6 2.0401 -0.7213 1.2491 27 1 1.6768 -0.2075 2.1391 28 8 3.4691 -0.7218 1.2488 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 0.9942 1.6617 -1.8348 35 1 0.3288 2.4069 -3.3749 36 1 -0.4934 3.5760 -5.3726 37 1 0.0993 5.9310 -5.7636 38 1 1.5091 7.1397 -4.1557 39 1 4.8405 8.0085 0.1902 40 1 1.6765 -0.2073 -2.1393 41 1 3.1300 -0.7208 -1.2497 42 1 0.4399 -2.1637 -1.2494 43 1 1.8929 -2.6773 -2.1396 44 1 1.6771 -3.9128 -0.0005 45 1 3.1301 -2.8850 -0.0003 46 1 1.8939 -2.6774 2.1390 47 1 0.4401 -2.1638 1.2491 48 1 3.8625 -1.1632 2.0139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178270355.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:43 Heat of formation + Delta-G solvation = -124.805000 kcal Electronic energy + Delta-G solvation = -29411.837995 eV Core-core repulsion = 25430.824132 eV Total energy + Delta-G solvation = -3981.013863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.54371 -40.87918 -39.59386 -38.02656 -36.67015 -35.56580 -34.33255 -33.20155 -31.72316 -30.97077 -30.57192 -27.91563 -27.38061 -26.68954 -24.52917 -23.58037 -23.06437 -22.04598 -21.42264 -19.86038 -19.54465 -19.15940 -17.96555 -17.82362 -17.11955 -16.48710 -16.33149 -16.25707 -16.08961 -15.73024 -15.65748 -15.45732 -15.25020 -15.20224 -14.49088 -14.32370 -14.19239 -14.00315 -13.71424 -13.55327 -13.43893 -13.20612 -12.98860 -12.74083 -12.69872 -12.52860 -12.45188 -12.37782 -12.28759 -12.12746 -11.90832 -11.60775 -11.43307 -11.10199 -10.91851 -10.83876 -10.62047 -10.54945 -10.09299 -9.77681 -9.03773 -8.44688 -6.16150 0.12252 0.72551 1.31349 1.43378 1.50966 2.10257 2.15533 2.28508 2.87599 3.22338 3.27103 3.46684 3.57935 3.75874 3.87289 3.96915 4.07458 4.12244 4.18908 4.28728 4.34036 4.35986 4.50032 4.51832 4.59366 4.63401 4.64675 4.75015 4.83282 4.88761 4.93836 4.99659 5.04855 5.07420 5.12859 5.14017 5.21286 5.27292 5.31602 5.38683 5.44763 5.48100 5.55901 5.61140 5.66242 5.69215 5.95838 6.17011 6.69336 6.94164 6.94565 7.49166 7.80763 8.76011 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015555 B = 0.003061 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.677640 B = 9144.264499 C =10579.692154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.053 4.053 3 C 0.141 3.859 4 N -0.712 5.712 5 C 0.544 3.456 6 O -0.572 6.572 7 C -0.245 4.245 8 C -0.030 4.030 9 C -0.199 4.199 10 C -0.039 4.039 11 C -0.257 4.257 12 C 0.149 3.851 13 O -0.190 6.190 14 C -0.428 4.428 15 H 0.108 0.892 16 C -0.024 4.024 17 N -0.906 5.906 18 Si 1.023 2.977 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.247 1.247 22 C -0.105 4.105 23 C -0.116 4.116 24 C -0.114 4.114 25 C -0.143 4.143 26 C 0.113 3.887 27 H 0.053 0.947 28 O -0.581 6.581 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.409 0.591 35 H 0.157 0.843 36 H 0.166 0.834 37 H 0.155 0.845 38 H 0.124 0.876 39 H 0.270 0.730 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.053 0.947 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.016 -21.679 -3.558 24.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.053 4.053 3 C 0.017 3.983 4 N -0.368 5.368 5 C 0.334 3.666 6 O -0.451 6.451 7 C -0.250 4.250 8 C -0.049 4.049 9 C -0.217 4.217 10 C -0.058 4.058 11 C -0.277 4.277 12 C 0.094 3.906 13 O -0.093 6.093 14 C -0.504 4.504 15 H 0.125 0.875 16 C -0.223 4.223 17 N -0.542 5.542 18 Si 0.842 3.158 19 H -0.186 1.186 20 H -0.198 1.198 21 H -0.170 1.170 22 C -0.143 4.143 23 C -0.153 4.153 24 C -0.152 4.152 25 C -0.181 4.181 26 C 0.053 3.947 27 H 0.071 0.929 28 O -0.389 6.389 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.248 0.752 35 H 0.175 0.825 36 H 0.184 0.816 37 H 0.173 0.827 38 H 0.141 0.859 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.072 0.928 46 H 0.096 0.904 47 H 0.107 0.893 48 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -10.363 -20.971 -3.113 23.598 hybrid contribution 0.776 0.834 0.691 1.333 sum -9.587 -20.136 -2.422 22.433 Atomic orbital electron populations 1.22013 0.91622 1.03880 1.02728 1.20724 0.97056 0.91081 0.96478 1.21184 0.97870 0.92478 0.86789 1.45657 1.54532 1.10604 1.25977 1.18615 0.79824 0.82227 0.85886 1.90927 1.39048 1.67109 1.48062 1.19310 1.12487 0.92711 1.00494 1.21272 0.92194 0.99513 0.91896 1.21179 1.05895 0.95016 0.99614 1.21442 0.92388 0.94845 0.97083 1.21306 1.07196 1.01877 0.97292 1.20094 0.89678 0.91542 0.89331 1.84185 1.57475 1.27771 1.39834 1.22054 1.28239 0.89084 1.11023 0.87517 1.26796 0.95387 1.05168 0.94924 1.70337 1.30467 1.39655 1.13757 0.84547 0.77891 0.73780 0.79624 1.18556 1.19774 1.17037 1.21512 1.00290 0.96617 0.95855 1.21572 1.01598 0.93785 0.98327 1.21439 1.00711 0.99040 0.94000 1.22230 1.02445 0.94215 0.99205 1.21764 0.80900 0.95967 0.96037 0.92867 1.86546 1.19909 1.81858 1.50568 0.92576 0.91581 0.88968 0.94143 0.94405 0.75204 0.82519 0.81644 0.82712 0.85876 0.92066 0.91833 0.93474 0.90068 0.91492 0.90632 0.92788 0.90369 0.89348 0.76136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 7.61 71.98 0.55 -1.77 16 2 C -0.05 -1.12 0.36 -52.18 -0.02 -1.14 16 3 C 0.14 4.66 4.42 86.38 0.38 5.04 16 4 N -0.71 -24.41 4.91 -466.25 -2.29 -26.69 16 5 C 0.54 26.20 7.76 86.69 0.67 26.88 16 6 O -0.57 -35.73 15.17 16.88 0.26 -35.47 16 7 C -0.25 -11.07 5.89 -19.99 -0.12 -11.19 16 8 C -0.03 -0.94 9.53 22.52 0.21 -0.73 16 9 C -0.20 -5.38 10.02 22.25 0.22 -5.15 16 10 C -0.04 -1.25 10.03 22.30 0.22 -1.02 16 11 C -0.26 -11.24 9.16 22.36 0.20 -11.04 16 12 C 0.15 7.90 6.66 22.91 0.15 8.05 16 13 O -0.19 -12.47 7.84 0.89 0.01 -12.46 16 14 C -0.43 -26.54 9.49 67.93 0.64 -25.89 16 15 H 0.11 5.91 5.21 -2.91 -0.02 5.90 16 16 C -0.02 -1.44 5.49 84.85 0.47 -0.98 16 17 N -0.91 -60.80 13.67 21.62 0.30 -60.50 16 18 Si 1.02 45.21 29.55 68.60 2.03 47.24 16 19 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 22 C -0.11 -2.09 4.41 30.60 0.13 -1.96 16 23 C -0.12 -1.57 5.65 30.60 0.17 -1.40 16 24 C -0.11 -1.46 5.78 30.59 0.18 -1.28 16 25 C -0.14 -1.73 5.36 30.59 0.16 -1.56 16 26 C 0.11 2.10 2.74 30.59 0.08 2.19 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 O -0.58 -12.80 11.29 -148.98 -1.68 -14.48 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 1.01 6.86 -2.39 -0.02 0.99 16 31 H 0.09 0.99 4.81 -2.39 -0.01 0.98 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.04 1.52 7.68 -2.39 -0.02 1.50 16 34 H 0.41 10.39 4.19 -92.71 -0.39 10.00 16 35 H 0.16 3.33 6.40 -2.91 -0.02 3.31 16 36 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 37 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 38 H 0.12 5.44 5.64 -2.91 -0.02 5.42 16 39 H 0.27 16.59 8.31 -92.71 -0.77 15.82 16 40 H 0.06 1.20 6.86 -2.38 -0.02 1.18 16 41 H 0.05 1.20 7.68 -2.39 -0.02 1.18 16 42 H 0.08 0.84 6.43 -2.39 -0.02 0.83 16 43 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 45 H 0.05 0.86 7.68 -2.39 -0.02 0.84 16 46 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.09 0.85 6.43 -2.39 -0.02 0.83 16 48 H 0.39 5.28 9.08 -74.06 -0.67 4.60 16 Total: -1.00 -93.12 372.34 2.89 -90.23 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: -0.05 Total: 35.10 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 4.33 Total: -22.96 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -1.99 Total: -87.20 kcal Atomic # 8 Polarization: -60.99 SS G_CDS: -1.42 Total: -62.41 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -93.12 2.89 -90.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178270355.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.577 kcal (2) G-P(sol) polarization free energy of solvation -93.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds