Wall clock time and date at job start Tue Mar 31 2020 18:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.46948 * 2 1 4 4 C 1.53004 * 109.47268 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47021 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.47328 * 299.99796 * 3 2 1 7 7 N 1.46494 * 109.47115 * 300.00233 * 6 3 2 8 8 C 1.34781 * 119.99667 * 179.97438 * 7 6 3 9 9 O 1.21542 * 120.00415 * 359.97438 * 8 7 6 10 10 C 1.47886 * 119.99598 * 180.02562 * 8 7 6 11 11 C 1.39915 * 120.03143 * 359.97438 * 10 8 7 12 12 C 1.38325 * 120.36223 * 180.02562 * 11 10 8 13 13 C 1.37745 * 120.41285 * 0.02562 * 12 11 10 14 14 C 1.40745 * 120.04067 * 359.97438 * 13 12 11 15 15 C 1.41439 * 120.18018 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99853 * 24.38666 * 15 14 13 17 17 C 1.39937 * 120.00015 * 204.38540 * 15 14 13 18 18 N 1.30828 * 120.00202 * 17.84583 * 17 15 14 19 19 Si 1.86804 * 120.00094 * 197.84043 * 17 15 14 20 20 H 1.48505 * 109.46643 * 60.00420 * 19 17 15 21 21 H 1.48494 * 109.47065 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47088 * 300.00333 * 19 17 15 23 23 C 1.38995 * 120.02525 * 180.02562 * 10 8 7 24 24 C 1.50697 * 109.47346 * 60.00213 * 3 2 1 25 25 O 1.20829 * 119.99945 * 240.00070 * 24 3 2 26 26 O 1.34232 * 119.99950 * 59.99454 * 24 3 2 27 27 C 1.45203 * 116.99772 * 180.02562 * 26 24 3 28 28 H 1.09002 * 109.46809 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47287 * 299.99670 * 1 2 3 30 30 H 1.08998 * 109.47355 * 60.00064 * 1 2 3 31 31 H 1.09003 * 109.46630 * 240.00138 * 2 1 3 32 32 H 1.08998 * 109.47355 * 119.99936 * 2 1 3 33 33 H 1.09000 * 109.46374 * 300.00039 * 4 3 2 34 34 H 1.08998 * 109.47128 * 59.99450 * 4 3 2 35 35 H 1.08994 * 109.47456 * 60.00323 * 5 4 3 36 36 H 1.09011 * 109.46572 * 179.97438 * 5 4 3 37 37 H 1.08998 * 109.47011 * 299.99538 * 5 4 3 38 38 H 1.09000 * 109.46956 * 179.97438 * 6 3 2 39 39 H 1.09007 * 109.46572 * 60.00394 * 6 3 2 40 40 H 0.96999 * 120.00641 * 359.97438 * 7 6 3 41 41 H 1.08009 * 119.81570 * 359.97438 * 11 10 8 42 42 H 1.08010 * 119.79275 * 180.02562 * 12 11 10 43 43 H 1.08002 * 119.98213 * 179.97438 * 13 12 11 44 44 H 0.96991 * 120.00411 * 180.02562 * 18 17 15 45 45 H 1.08005 * 120.20307 * 359.70165 * 23 10 8 46 46 H 1.08994 * 109.47222 * 300.00633 * 27 26 24 47 47 H 1.09000 * 109.47044 * 60.00616 * 27 26 24 48 48 H 1.08999 * 109.46865 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 1.5300 2.1637 -1.2493 7 7 2.0183 1.4732 -2.4454 8 6 1.6923 1.9334 -3.6695 9 8 0.9928 2.9211 -3.7811 10 6 2.1848 1.2359 -4.8770 11 6 2.9896 0.0986 -4.7493 12 6 3.4545 -0.5588 -5.8741 13 6 3.1312 -0.1015 -7.1326 14 6 2.3227 1.0409 -7.2809 15 6 1.9884 1.5128 -8.5717 16 1 1.9946 0.8352 -9.4126 17 6 1.6498 2.8575 -8.7591 18 7 1.9687 3.7450 -7.8524 19 14 0.7423 3.3856 -10.3042 20 1 -0.5587 2.6738 -10.3817 21 1 0.5038 4.8507 -10.2619 22 1 1.5609 3.0521 -11.4974 23 6 1.8494 1.7103 -6.1397 24 6 1.5377 2.1529 1.2304 25 8 0.8430 3.1352 1.1196 26 8 1.8619 1.6942 2.4496 27 6 1.3423 2.4281 3.5897 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9336 0.9286 0.8891 34 1 3.9330 0.9288 -0.8908 35 1 3.7170 3.3983 0.8904 36 1 5.1700 2.8850 0.0000 37 1 3.7162 3.3994 -0.8896 38 1 1.8929 3.1915 -1.2490 39 1 0.4399 2.1637 -1.2492 40 1 2.5762 0.6847 -2.3565 41 1 3.2500 -0.2676 -3.7671 42 1 4.0749 -1.4362 -5.7649 43 1 3.4983 -0.6199 -8.0060 44 1 1.7337 4.6770 -7.9821 45 1 1.2251 2.5856 -6.2431 46 1 1.7057 3.4552 3.5568 47 1 0.2528 2.4270 3.5566 48 1 1.6787 1.9533 4.5113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178801888.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:21 Heat of formation + Delta-G solvation = -119.835966 kcal Electronic energy + Delta-G solvation = -29285.328718 eV Core-core repulsion = 25304.530329 eV Total energy + Delta-G solvation = -3980.798390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.26097 -39.32859 -37.75726 -36.82871 -36.42248 -33.80598 -33.16550 -32.52249 -30.24166 -29.43911 -28.53146 -27.64241 -25.76134 -25.14341 -23.50681 -22.25364 -22.06062 -20.95018 -19.69467 -19.45769 -17.90574 -17.38171 -16.87515 -16.59652 -16.01748 -15.70322 -15.30518 -15.04622 -14.74850 -14.42639 -14.41856 -13.84223 -13.80286 -13.33463 -13.20197 -13.13147 -13.07723 -12.80130 -12.60841 -12.48907 -12.40457 -12.17436 -11.81582 -11.64374 -11.59498 -11.18398 -11.14835 -11.08232 -10.99670 -10.86175 -10.77543 -10.68772 -10.50061 -10.40257 -10.03022 -9.70110 -9.20872 -9.03466 -8.65296 -7.63384 -7.52661 -6.80110 -4.41599 2.01275 2.21366 2.37242 2.82224 3.07939 3.09598 3.16874 3.72752 3.87303 3.92425 4.20065 4.33577 4.44536 4.64367 4.73322 4.82851 4.89977 4.98740 5.13475 5.15192 5.20271 5.23977 5.43981 5.55091 5.60287 5.60683 5.75465 5.79782 5.80051 5.85129 5.88014 5.90625 6.07006 6.09969 6.16694 6.25354 6.27167 6.71582 6.80653 6.98259 7.01282 7.21010 7.37713 7.53252 7.69307 7.74917 7.92133 8.07690 8.18714 8.50180 8.79966 8.83258 8.95243 10.14449 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019711 B = 0.002742 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.161373 B =10208.631133 C =10741.070853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.113 4.113 3 C -0.061 4.061 4 C -0.113 4.113 5 C -0.161 4.161 6 C 0.139 3.861 7 N -0.733 5.733 8 C 0.565 3.435 9 O -0.542 6.542 10 C -0.126 4.126 11 C -0.219 4.219 12 C -0.097 4.097 13 C -0.213 4.213 14 C 0.099 3.901 15 C -0.460 4.460 16 H 0.081 0.919 17 C 0.073 3.927 18 N -0.782 5.782 19 Si 0.910 3.090 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.265 1.265 23 C -0.092 4.092 24 C 0.480 3.520 25 O -0.499 6.499 26 O -0.355 6.355 27 C 0.034 3.966 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.398 0.602 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.285 0.715 45 H 0.134 0.866 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.863 -5.621 18.900 19.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.151 4.151 3 C -0.063 4.063 4 C -0.151 4.151 5 C -0.218 4.218 6 C 0.015 3.985 7 N -0.389 5.389 8 C 0.355 3.645 9 O -0.419 6.419 10 C -0.129 4.129 11 C -0.239 4.239 12 C -0.115 4.115 13 C -0.233 4.233 14 C 0.096 3.904 15 C -0.488 4.488 16 H 0.099 0.901 17 C -0.146 4.146 18 N -0.406 5.406 19 Si 0.735 3.265 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.190 1.190 23 C -0.112 4.112 24 C 0.322 3.678 25 O -0.386 6.386 26 O -0.272 6.272 27 C -0.060 4.060 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.234 0.766 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.097 0.903 45 H 0.151 0.849 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.125 -4.306 18.879 19.396 hybrid contribution -0.140 0.132 -0.352 0.401 sum 0.985 -4.174 18.527 19.017 Atomic orbital electron populations 1.21898 0.95039 1.02497 1.02322 1.21631 0.96854 0.92727 1.03881 1.20878 0.98108 0.96999 0.90293 1.21633 0.90799 0.98787 1.03872 1.21901 1.01654 0.95893 1.02334 1.21086 0.99835 0.95972 0.81640 1.45908 1.55344 1.32645 1.04981 1.18831 0.79114 0.83517 0.83023 1.90716 1.38030 1.26370 1.86829 1.19439 1.03345 0.97784 0.92369 1.20298 1.07684 0.99503 0.96421 1.20422 0.99663 0.98376 0.93061 1.21085 1.04594 1.02153 0.95440 1.17596 0.88886 0.90664 0.93213 1.19562 1.40539 0.94211 0.94538 0.90106 1.25968 0.93762 0.96595 0.98292 1.69776 1.33489 1.03432 1.33907 0.86326 0.80764 0.77996 0.81456 1.18708 1.20217 1.18969 1.21641 0.99577 1.00536 0.89470 1.23325 0.77202 0.82581 0.84721 1.90707 1.35176 1.25612 1.87061 1.86494 1.69878 1.55621 1.15175 1.23276 0.99801 0.97017 0.85908 0.91725 0.93291 0.91458 0.89854 0.90219 0.90231 0.89850 0.93298 0.91705 0.91419 0.90551 0.90587 0.76557 0.89385 0.88935 0.88660 0.90339 0.84850 0.91889 0.91894 0.88071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.31 37.16 0.35 -1.32 16 2 C -0.11 -1.08 4.76 -26.73 -0.13 -1.20 16 3 C -0.06 -0.69 0.28 -155.66 -0.04 -0.73 16 4 C -0.11 -1.10 4.76 -26.73 -0.13 -1.22 16 5 C -0.16 -1.72 9.31 37.16 0.35 -1.38 16 6 C 0.14 2.07 3.15 -4.04 -0.01 2.06 16 7 N -0.73 -11.76 4.91 -61.24 -0.30 -12.06 16 8 C 0.56 12.21 7.77 -12.31 -0.10 12.11 16 9 O -0.54 -13.73 16.33 5.33 0.09 -13.64 16 10 C -0.13 -2.92 5.87 -105.04 -0.62 -3.54 16 11 C -0.22 -4.44 9.55 -38.92 -0.37 -4.82 16 12 C -0.10 -2.01 10.01 -39.73 -0.40 -2.41 16 13 C -0.21 -4.98 9.78 -38.82 -0.38 -5.36 16 14 C 0.10 2.60 5.57 -106.87 -0.60 2.00 16 15 C -0.46 -12.02 9.05 -37.73 -0.34 -12.36 16 16 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 17 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 18 N -0.78 -20.74 10.95 55.55 0.61 -20.13 16 19 Si 0.91 18.81 29.60 -169.99 -5.03 13.78 16 20 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 23 C -0.09 -2.44 8.23 -38.44 -0.32 -2.76 16 24 C 0.48 5.86 4.03 36.00 0.14 6.00 16 25 O -0.50 -7.59 15.73 -18.75 -0.29 -7.88 16 26 O -0.36 -3.60 10.37 -39.26 -0.41 -4.00 16 27 C 0.03 0.25 10.56 101.05 1.07 1.32 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.52 7.22 -51.93 -0.37 0.14 16 30 H 0.07 0.83 6.43 -51.93 -0.33 0.49 16 31 H 0.08 0.75 6.86 -51.93 -0.36 0.39 16 32 H 0.08 0.63 8.11 -51.93 -0.42 0.21 16 33 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 34 H 0.08 0.77 6.86 -51.93 -0.36 0.41 16 35 H 0.05 0.53 7.22 -51.93 -0.37 0.15 16 36 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 37 H 0.07 0.86 6.43 -51.93 -0.33 0.53 16 38 H 0.08 1.27 6.39 -51.93 -0.33 0.94 16 39 H 0.08 1.25 6.39 -51.92 -0.33 0.92 16 40 H 0.40 5.36 4.18 -40.82 -0.17 5.19 16 41 H 0.09 1.44 6.38 -52.48 -0.33 1.10 16 42 H 0.09 1.62 8.06 -52.48 -0.42 1.19 16 43 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 44 H 0.29 7.00 8.30 -40.82 -0.34 6.66 16 45 H 0.13 3.85 5.74 -52.48 -0.30 3.54 16 46 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 47 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 48 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 385.66 15.07 5.81 5.81 Total: -1.00 -31.22 385.66 -8.09 -39.31 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -6.95 Total: 10.66 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -1.61 Total: -11.85 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.31 Total: -32.19 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.62 Total: -25.52 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.22 -8.09 -39.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178801888.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.523 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds