Wall clock time and date at job start Tue Mar 31 2020 18:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.46948 * 2 1 4 4 C 1.53004 * 109.47268 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47021 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.47328 * 299.99796 * 3 2 1 7 7 N 1.46494 * 109.47115 * 300.00233 * 6 3 2 8 8 C 1.34781 * 119.99667 * 179.97438 * 7 6 3 9 9 O 1.21542 * 120.00415 * 359.97438 * 8 7 6 10 10 C 1.47886 * 119.99598 * 180.02562 * 8 7 6 11 11 C 1.39915 * 120.03143 * 359.97438 * 10 8 7 12 12 C 1.38325 * 120.36223 * 180.02562 * 11 10 8 13 13 C 1.37745 * 120.41285 * 0.02562 * 12 11 10 14 14 C 1.40745 * 120.04067 * 359.97438 * 13 12 11 15 15 C 1.41439 * 120.18018 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99853 * 24.38666 * 15 14 13 17 17 C 1.39937 * 120.00015 * 204.38540 * 15 14 13 18 18 N 1.30828 * 120.00202 * 17.84583 * 17 15 14 19 19 Si 1.86804 * 120.00094 * 197.84043 * 17 15 14 20 20 H 1.48505 * 109.46643 * 60.00420 * 19 17 15 21 21 H 1.48494 * 109.47065 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47088 * 300.00333 * 19 17 15 23 23 C 1.38995 * 120.02525 * 180.02562 * 10 8 7 24 24 C 1.50697 * 109.47346 * 60.00213 * 3 2 1 25 25 O 1.20829 * 119.99945 * 240.00070 * 24 3 2 26 26 O 1.34232 * 119.99950 * 59.99454 * 24 3 2 27 27 C 1.45203 * 116.99772 * 180.02562 * 26 24 3 28 28 H 1.09002 * 109.46809 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47287 * 299.99670 * 1 2 3 30 30 H 1.08998 * 109.47355 * 60.00064 * 1 2 3 31 31 H 1.09003 * 109.46630 * 240.00138 * 2 1 3 32 32 H 1.08998 * 109.47355 * 119.99936 * 2 1 3 33 33 H 1.09000 * 109.46374 * 300.00039 * 4 3 2 34 34 H 1.08998 * 109.47128 * 59.99450 * 4 3 2 35 35 H 1.08994 * 109.47456 * 60.00323 * 5 4 3 36 36 H 1.09011 * 109.46572 * 179.97438 * 5 4 3 37 37 H 1.08998 * 109.47011 * 299.99538 * 5 4 3 38 38 H 1.09000 * 109.46956 * 179.97438 * 6 3 2 39 39 H 1.09007 * 109.46572 * 60.00394 * 6 3 2 40 40 H 0.96999 * 120.00641 * 359.97438 * 7 6 3 41 41 H 1.08009 * 119.81570 * 359.97438 * 11 10 8 42 42 H 1.08010 * 119.79275 * 180.02562 * 12 11 10 43 43 H 1.08002 * 119.98213 * 179.97438 * 13 12 11 44 44 H 0.96991 * 120.00411 * 180.02562 * 18 17 15 45 45 H 1.08005 * 120.20307 * 359.70165 * 23 10 8 46 46 H 1.08994 * 109.47222 * 300.00633 * 27 26 24 47 47 H 1.09000 * 109.47044 * 60.00616 * 27 26 24 48 48 H 1.08999 * 109.46865 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 1.5300 2.1637 -1.2493 7 7 2.0183 1.4732 -2.4454 8 6 1.6923 1.9334 -3.6695 9 8 0.9928 2.9211 -3.7811 10 6 2.1848 1.2359 -4.8770 11 6 2.9896 0.0986 -4.7493 12 6 3.4545 -0.5588 -5.8741 13 6 3.1312 -0.1015 -7.1326 14 6 2.3227 1.0409 -7.2809 15 6 1.9884 1.5128 -8.5717 16 1 1.9946 0.8352 -9.4126 17 6 1.6498 2.8575 -8.7591 18 7 1.9687 3.7450 -7.8524 19 14 0.7423 3.3856 -10.3042 20 1 -0.5587 2.6738 -10.3817 21 1 0.5038 4.8507 -10.2619 22 1 1.5609 3.0521 -11.4974 23 6 1.8494 1.7103 -6.1397 24 6 1.5377 2.1529 1.2304 25 8 0.8430 3.1352 1.1196 26 8 1.8619 1.6942 2.4496 27 6 1.3423 2.4281 3.5897 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9336 0.9286 0.8891 34 1 3.9330 0.9288 -0.8908 35 1 3.7170 3.3983 0.8904 36 1 5.1700 2.8850 0.0000 37 1 3.7162 3.3994 -0.8896 38 1 1.8929 3.1915 -1.2490 39 1 0.4399 2.1637 -1.2492 40 1 2.5762 0.6847 -2.3565 41 1 3.2500 -0.2676 -3.7671 42 1 4.0749 -1.4362 -5.7649 43 1 3.4983 -0.6199 -8.0060 44 1 1.7337 4.6770 -7.9821 45 1 1.2251 2.5856 -6.2431 46 1 1.7057 3.4552 3.5568 47 1 0.2528 2.4270 3.5566 48 1 1.6787 1.9533 4.5113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178801888.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:20 Heat of formation + Delta-G solvation = -137.953118 kcal Electronic energy + Delta-G solvation = -29286.114337 eV Core-core repulsion = 25304.530329 eV Total energy + Delta-G solvation = -3981.584008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.24851 -40.88944 -39.09004 -38.37019 -37.43617 -35.63110 -34.66646 -33.32685 -32.01404 -31.25291 -29.35859 -28.63865 -27.25018 -26.57980 -24.68019 -23.49661 -23.04190 -22.75752 -21.28284 -20.53824 -19.60701 -18.32157 -18.09221 -17.77074 -17.36469 -16.85585 -16.80447 -16.65781 -16.35212 -15.61781 -15.52951 -15.15802 -15.01459 -14.98978 -14.48793 -14.25799 -14.15000 -14.01698 -13.92736 -13.70943 -13.52619 -13.30592 -13.09829 -12.92329 -12.79794 -12.65545 -12.51018 -12.47883 -12.20489 -11.97153 -11.90346 -11.80651 -11.71246 -11.62297 -11.48659 -11.34324 -11.05876 -10.83025 -10.18966 -9.45537 -9.35999 -8.65779 -6.36819 0.39535 1.03462 1.06951 1.35786 1.47108 1.47792 1.50518 2.10359 2.19238 2.32309 2.79823 3.22479 3.49144 3.55491 3.72471 3.84416 4.02232 4.18611 4.28280 4.30120 4.30483 4.33142 4.40725 4.42633 4.45772 4.62204 4.63926 4.68899 4.77875 4.84231 4.93640 5.00722 5.02064 5.03588 5.07462 5.10144 5.21993 5.26070 5.27638 5.32342 5.35056 5.37860 5.53808 5.88281 5.94533 6.07612 6.30920 6.50311 6.62074 6.68556 6.89197 6.96843 7.29438 8.30501 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019711 B = 0.002742 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.161373 B =10208.631133 C =10741.070853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.110 4.110 3 C -0.055 4.055 4 C -0.110 4.110 5 C -0.162 4.162 6 C 0.142 3.858 7 N -0.701 5.701 8 C 0.562 3.438 9 O -0.591 6.591 10 C -0.136 4.136 11 C -0.193 4.193 12 C -0.094 4.094 13 C -0.216 4.216 14 C 0.066 3.934 15 C -0.498 4.498 16 H 0.084 0.916 17 C 0.029 3.971 18 N -0.826 5.826 19 Si 0.981 3.019 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.251 1.251 23 C -0.133 4.133 24 C 0.483 3.517 25 O -0.539 6.539 26 O -0.348 6.348 27 C 0.026 3.974 28 H 0.083 0.917 29 H 0.042 0.958 30 H 0.039 0.961 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.038 0.962 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.415 0.585 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.108 0.892 44 H 0.285 0.715 45 H 0.095 0.905 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.799 -9.003 21.021 23.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.148 4.148 3 C -0.057 4.057 4 C -0.148 4.148 5 C -0.219 4.219 6 C 0.018 3.982 7 N -0.356 5.356 8 C 0.352 3.648 9 O -0.472 6.472 10 C -0.139 4.139 11 C -0.212 4.212 12 C -0.112 4.112 13 C -0.236 4.236 14 C 0.064 3.936 15 C -0.527 4.527 16 H 0.102 0.898 17 C -0.186 4.186 18 N -0.451 5.451 19 Si 0.801 3.199 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.175 1.175 23 C -0.153 4.153 24 C 0.327 3.673 25 O -0.429 6.429 26 O -0.263 6.263 27 C -0.067 4.067 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.255 0.745 41 H 0.159 0.841 42 H 0.160 0.840 43 H 0.126 0.874 44 H 0.096 0.904 45 H 0.113 0.887 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.105 -7.755 21.047 22.644 hybrid contribution -0.676 1.066 -0.754 1.470 sum 2.429 -6.690 20.293 21.505 Atomic orbital electron populations 1.21901 0.96106 1.03173 1.00701 1.21718 0.95864 0.91242 1.05932 1.20835 0.99429 0.97540 0.87847 1.21718 0.88945 0.98189 1.05913 1.21904 1.02776 0.96583 1.00659 1.21017 0.98753 0.95533 0.82880 1.45537 1.54021 1.32413 1.03638 1.18781 0.78791 0.82945 0.84305 1.90695 1.40333 1.28557 1.87611 1.19703 1.03640 0.98828 0.91760 1.20858 1.04308 0.97023 0.99044 1.20941 0.99125 0.99405 0.91698 1.21416 1.03565 1.00996 0.97579 1.17936 0.90163 0.92190 0.93301 1.19841 1.42868 0.95027 0.94992 0.89751 1.26847 0.93987 0.96339 1.01427 1.69887 1.35425 1.03622 1.36204 0.85270 0.79368 0.77497 0.77742 1.18538 1.19878 1.17476 1.21438 1.01521 1.00895 0.91478 1.23476 0.76312 0.81852 0.85673 1.90704 1.37091 1.27445 1.87645 1.86473 1.69483 1.55505 1.14873 1.23589 0.99794 0.97252 0.86103 0.89834 0.93922 0.94195 0.88533 0.87299 0.87257 0.88597 0.93859 0.89926 0.94336 0.92799 0.92549 0.74510 0.84117 0.84016 0.87370 0.90426 0.88655 0.92320 0.92254 0.84373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 9.31 71.98 0.67 -2.40 16 2 C -0.11 -1.69 4.76 30.59 0.15 -1.55 16 3 C -0.05 -1.13 0.28 -52.93 -0.02 -1.14 16 4 C -0.11 -1.74 4.76 30.60 0.15 -1.60 16 5 C -0.16 -3.22 9.31 71.98 0.67 -2.55 16 6 C 0.14 4.28 3.15 86.38 0.27 4.55 16 7 N -0.70 -21.73 4.91 -465.93 -2.29 -24.02 16 8 C 0.56 24.80 7.77 86.80 0.67 25.47 16 9 O -0.59 -31.88 16.33 -3.85 -0.06 -31.94 16 10 C -0.14 -6.33 5.87 -20.13 -0.12 -6.45 16 11 C -0.19 -7.13 9.55 22.70 0.22 -6.91 16 12 C -0.09 -3.52 10.01 22.17 0.22 -3.30 16 13 C -0.22 -9.85 9.78 22.77 0.22 -9.63 16 14 C 0.07 3.59 5.57 -21.32 -0.12 3.47 16 15 C -0.50 -27.21 9.05 23.47 0.21 -27.00 16 16 H 0.08 4.33 7.91 -2.91 -0.02 4.30 16 17 C 0.03 1.53 5.14 85.25 0.44 1.97 16 18 N -0.83 -46.87 10.95 21.82 0.24 -46.63 16 19 Si 0.98 40.25 29.60 68.60 2.03 42.28 16 20 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 22 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 23 C -0.13 -7.39 8.23 23.01 0.19 -7.20 16 24 C 0.48 11.24 4.03 71.23 0.29 11.52 16 25 O -0.54 -16.75 15.73 21.95 0.35 -16.41 16 26 O -0.35 -6.12 10.37 -51.44 -0.53 -6.66 16 27 C 0.03 0.33 10.56 113.37 1.20 1.53 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.04 0.85 7.22 -2.39 -0.02 0.83 16 30 H 0.04 0.97 6.43 -2.39 -0.02 0.96 16 31 H 0.10 1.25 6.86 -2.39 -0.02 1.23 16 32 H 0.11 1.14 8.11 -2.39 -0.02 1.12 16 33 H 0.11 1.18 8.12 -2.39 -0.02 1.16 16 34 H 0.10 1.30 6.86 -2.39 -0.02 1.28 16 35 H 0.04 0.89 7.22 -2.39 -0.02 0.87 16 36 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.04 0.98 6.43 -2.39 -0.02 0.97 16 38 H 0.05 1.90 6.39 -2.39 -0.02 1.88 16 39 H 0.06 1.95 6.39 -2.38 -0.02 1.93 16 40 H 0.41 9.64 4.18 -92.71 -0.39 9.25 16 41 H 0.14 3.68 6.38 -2.91 -0.02 3.66 16 42 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 43 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 44 H 0.29 15.05 8.30 -92.71 -0.77 14.29 16 45 H 0.10 5.99 5.74 -2.91 -0.02 5.97 16 46 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 47 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 48 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -76.04 385.66 5.64 -70.40 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: 0.59 Total: 34.18 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 5.31 Total: -21.21 kcal Atomic # 7 Polarization: -68.61 SS G_CDS: -2.05 Total: -70.66 kcal Atomic # 8 Polarization: -54.76 SS G_CDS: -0.25 Total: -55.01 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -76.04 5.64 -70.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178801888.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.548 kcal (2) G-P(sol) polarization free energy of solvation -76.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds