Wall clock time and date at job start Tue Mar 31 2020 18:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47234 * 2 1 4 4 C 1.52999 * 109.47232 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.46896 * 299.99992 * 4 3 2 6 6 C 1.52998 * 109.47302 * 59.99349 * 4 3 2 7 7 O 1.42899 * 109.46847 * 65.00470 * 6 4 3 8 8 N 1.46495 * 109.47190 * 180.02562 * 4 3 2 9 9 C 1.34778 * 119.99947 * 179.97438 * 8 4 3 10 10 O 1.21719 * 120.00056 * 359.97438 * 9 8 4 11 11 C 1.46255 * 119.99683 * 180.02562 * 9 8 4 12 12 C 1.35029 * 119.99570 * 179.97438 * 11 9 8 13 13 C 1.46965 * 119.99584 * 179.97438 * 12 11 9 14 14 C 1.40022 * 120.10157 * 359.45305 * 13 12 11 15 15 C 1.37596 * 119.89269 * 179.69699 * 14 13 12 16 16 C 1.39177 * 120.10258 * 0.60002 * 15 14 13 17 17 O 1.35574 * 119.89788 * 179.69642 * 16 15 14 18 18 C 1.34776 * 117.00213 * 174.41927 * 17 16 15 19 19 H 1.08006 * 119.99458 * 5.06162 * 18 17 16 20 20 C 1.38711 * 120.00529 * 185.05418 * 18 17 16 21 21 N 1.31517 * 119.99798 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00356 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46757 * 90.00594 * 22 20 18 24 24 H 1.48508 * 109.47511 * 210.00247 * 22 20 18 25 25 H 1.48497 * 109.47280 * 330.00610 * 22 20 18 26 26 C 1.39170 * 120.20383 * 359.67511 * 16 15 14 27 27 C 1.37599 * 120.10134 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.46762 * 300.00342 * 1 2 3 29 29 H 1.08997 * 109.47052 * 59.99821 * 1 2 3 30 30 H 1.09001 * 109.47293 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47003 * 240.00117 * 2 1 3 32 32 H 1.09002 * 109.47492 * 120.00332 * 2 1 3 33 33 H 1.09000 * 109.47030 * 60.00133 * 3 2 1 34 34 H 1.08994 * 109.46753 * 300.00054 * 3 2 1 35 35 H 1.09000 * 109.47072 * 300.00084 * 5 4 3 36 36 H 1.09001 * 109.46954 * 60.00038 * 5 4 3 37 37 H 1.08999 * 109.47173 * 180.02562 * 5 4 3 38 38 H 1.09001 * 109.47128 * 185.00287 * 6 4 3 39 39 H 1.08997 * 109.47355 * 305.00734 * 6 4 3 40 40 H 0.96701 * 114.00657 * 179.97438 * 7 6 4 41 41 H 0.96997 * 120.00109 * 359.97438 * 8 4 3 42 42 H 1.07997 * 120.00400 * 0.02562 * 11 9 8 43 43 H 1.07995 * 120.00043 * 359.72553 * 12 11 9 44 44 H 1.07996 * 120.04869 * 359.97438 * 14 13 12 45 45 H 1.08003 * 119.94749 * 180.27231 * 15 14 13 46 46 H 0.97002 * 120.00056 * 180.02562 * 21 20 18 47 47 H 1.08002 * 119.94913 * 180.02562 * 26 16 15 48 48 H 1.08001 * 120.05393 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0805 0.7211 1.2484 6 6 4.0795 0.7214 -1.2501 7 8 3.7011 1.4595 -2.4137 8 7 4.0584 2.8237 0.0000 9 6 5.3835 3.0700 0.0001 10 8 6.1744 2.1448 0.0001 11 6 5.8709 4.4489 0.0013 12 6 7.1985 4.6956 0.0019 13 6 7.6883 6.0812 0.0025 14 6 6.7803 7.1470 -0.0091 15 6 7.2436 8.4426 -0.0022 16 6 8.6124 8.6945 0.0038 17 8 9.0643 9.9727 0.0044 18 6 10.3945 10.1514 0.1270 19 1 11.0554 9.2972 0.1367 20 6 10.9149 11.4322 0.2405 21 7 10.1100 12.4723 0.2290 22 14 12.7585 11.6797 0.4112 23 1 13.3658 11.8206 -0.9367 24 1 13.0219 12.9078 1.2036 25 1 13.3534 10.5076 1.1021 26 6 9.5186 7.6383 0.0095 27 6 9.0645 6.3394 0.0089 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.7175 1.2348 2.1385 36 1 3.7172 -0.3066 1.2483 37 1 5.1705 0.7214 1.2482 38 1 5.1659 0.6431 -1.2068 39 1 3.6449 -0.2771 -1.2960 40 1 3.9920 1.0600 -3.2449 41 1 3.4281 3.5610 0.0003 42 1 5.1692 5.2698 0.0025 43 1 7.9003 3.8747 0.0060 44 1 5.7181 6.9524 -0.0190 45 1 6.5440 9.2654 -0.0067 46 1 10.4739 13.3680 0.3080 47 1 10.5799 7.8385 0.0145 48 1 9.7685 5.5203 0.0138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180233653.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:47 Heat of formation + Delta-G solvation = -86.235588 kcal Electronic energy + Delta-G solvation = -27415.439179 eV Core-core repulsion = 23436.097811 eV Total energy + Delta-G solvation = -3979.341368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.28109 -39.16726 -37.82625 -36.81017 -35.75081 -33.82451 -33.18654 -32.30115 -30.99521 -30.40569 -28.08518 -27.08763 -26.17975 -25.67402 -23.88425 -22.45513 -22.04312 -20.66703 -19.53761 -19.20437 -18.15229 -17.49275 -17.14732 -17.04667 -16.18387 -15.59781 -15.26604 -14.87735 -14.77787 -14.42279 -14.37123 -14.05389 -13.81244 -13.69867 -13.67295 -13.36193 -13.01879 -12.97923 -12.57141 -12.41644 -12.35589 -12.12426 -11.90893 -11.76057 -11.71836 -11.69808 -11.41946 -11.11733 -11.05201 -10.95791 -10.82574 -10.65504 -10.52545 -10.18522 -9.56183 -9.47657 -9.40487 -9.03327 -8.82433 -8.36285 -7.08847 -6.63615 -4.18651 1.11877 2.15260 2.59872 3.04670 3.05705 3.10422 3.20540 3.64109 3.83429 4.02373 4.41036 4.52634 4.55484 4.69934 4.84897 4.94067 4.97366 5.06630 5.08159 5.18804 5.24092 5.30195 5.34814 5.42833 5.53682 5.55889 5.56546 5.58818 5.65296 5.69514 5.70540 5.80392 5.89486 5.95775 6.03312 6.13959 6.16724 6.46437 6.51442 6.57369 6.65333 6.81498 6.93957 7.15133 7.25783 7.30535 7.44543 7.65878 7.67407 7.81739 8.43995 8.81210 9.48500 10.53071 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.033499 B = 0.001718 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.646130 B =16291.644551 C =16625.074138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.120 4.120 4 C 0.182 3.818 5 C -0.166 4.166 6 C 0.061 3.939 7 O -0.566 6.566 8 N -0.717 5.717 9 C 0.562 3.438 10 O -0.561 6.561 11 C -0.279 4.279 12 C 0.035 3.965 13 C -0.197 4.197 14 C -0.043 4.043 15 C -0.199 4.199 16 C 0.166 3.834 17 O -0.163 6.163 18 C -0.393 4.393 19 H 0.097 0.903 20 C 0.041 3.959 21 N -0.853 5.853 22 Si 0.945 3.055 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.265 1.265 26 C -0.242 4.242 27 C -0.036 4.036 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.376 0.624 41 H 0.399 0.601 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.274 0.726 47 H 0.131 0.869 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.313 -21.611 -0.735 25.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.158 4.158 4 C 0.096 3.904 5 C -0.224 4.224 6 C -0.017 4.017 7 O -0.371 6.371 8 N -0.367 5.367 9 C 0.355 3.645 10 O -0.443 6.443 11 C -0.300 4.300 12 C 0.015 3.985 13 C -0.198 4.198 14 C -0.062 4.062 15 C -0.219 4.219 16 C 0.110 3.890 17 O -0.064 6.064 18 C -0.469 4.469 19 H 0.114 0.886 20 C -0.165 4.165 21 N -0.485 5.485 22 Si 0.769 3.231 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.190 1.190 26 C -0.261 4.261 27 C -0.054 4.054 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.222 0.778 41 H 0.233 0.767 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.084 0.916 47 H 0.149 0.851 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.120 -21.346 -0.272 25.595 hybrid contribution 0.812 0.171 -0.363 0.906 sum -13.308 -21.175 -0.635 25.018 Atomic orbital electron populations 1.21759 0.95610 1.01602 1.01918 1.21620 0.96024 0.96187 1.02339 1.21801 0.92981 0.98012 1.02962 1.20272 0.93722 0.82496 0.93917 1.22248 1.04089 0.99919 0.96177 1.22709 1.00360 0.93421 0.85240 1.86446 1.81218 1.53379 1.16050 1.45798 1.07182 1.07464 1.76254 1.18309 0.81642 0.89754 0.74833 1.90683 1.55587 1.46309 1.51676 1.22469 0.96915 0.94645 1.15999 1.22255 0.95081 0.95057 0.86087 1.18475 0.93363 0.91740 1.16227 1.20884 0.98243 0.91352 0.95690 1.20152 0.92916 0.96721 1.12070 1.19609 0.92784 0.85258 0.91333 1.83903 1.26118 1.20646 1.75761 1.21469 0.79187 0.94228 1.52003 0.88567 1.25388 1.00889 0.94139 0.96045 1.70018 1.35600 0.98857 1.44060 0.85650 0.79937 0.78674 0.78871 1.19651 1.20060 1.18966 1.21097 1.00455 0.92191 1.12386 1.20983 0.93994 0.95946 0.94517 0.92723 0.92659 0.92752 0.91644 0.91539 0.91397 0.90524 0.92026 0.91708 0.89970 0.91403 0.93333 0.77829 0.76655 0.86061 0.86015 0.86426 0.86150 0.91630 0.85145 0.86859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.49 16 2 C -0.12 -0.79 5.24 -26.73 -0.14 -0.93 16 3 C -0.12 -0.91 4.28 -26.73 -0.11 -1.02 16 4 C 0.18 1.76 0.61 -131.82 -0.08 1.68 16 5 C -0.17 -1.59 8.05 37.16 0.30 -1.29 16 6 C 0.06 0.61 5.42 37.16 0.20 0.81 16 7 O -0.57 -5.76 12.96 -35.23 -0.46 -6.21 16 8 N -0.72 -7.90 4.87 -49.03 -0.24 -8.14 16 9 C 0.56 7.90 7.16 -13.04 -0.09 7.81 16 10 O -0.56 -9.22 12.49 5.17 0.06 -9.16 16 11 C -0.28 -3.93 9.41 -37.50 -0.35 -4.28 16 12 C 0.04 0.54 9.45 -37.19 -0.35 0.19 16 13 C -0.20 -3.42 5.87 -105.03 -0.62 -4.03 16 14 C -0.04 -0.76 9.40 -39.15 -0.37 -1.12 16 15 C -0.20 -4.04 9.97 -39.47 -0.39 -4.43 16 16 C 0.17 3.86 6.66 -38.89 -0.26 3.61 16 17 O -0.16 -4.46 9.74 0.74 0.01 -4.46 16 18 C -0.39 -10.52 9.48 30.91 0.29 -10.23 16 19 H 0.10 2.36 5.18 -52.48 -0.27 2.09 16 20 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 21 N -0.85 -23.97 13.67 55.48 0.76 -23.21 16 22 Si 0.94 19.62 29.55 -169.99 -5.02 14.60 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 26 C -0.24 -5.06 9.14 -39.47 -0.36 -5.42 16 27 C -0.04 -0.65 9.78 -39.15 -0.38 -1.03 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.43 6.32 -51.93 -0.33 0.10 16 32 H 0.07 0.40 6.43 -51.93 -0.33 0.06 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.64 7.82 -51.93 -0.41 0.24 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 37 H 0.08 1.00 6.16 -51.93 -0.32 0.68 16 38 H 0.07 0.84 6.32 -51.93 -0.33 0.51 16 39 H 0.05 0.39 6.17 -51.93 -0.32 0.07 16 40 H 0.38 2.42 9.12 45.56 0.42 2.83 16 41 H 0.40 3.67 8.45 -40.82 -0.34 3.33 16 42 H 0.12 1.50 6.07 -52.49 -0.32 1.19 16 43 H 0.12 1.86 7.52 -52.49 -0.39 1.47 16 44 H 0.12 1.69 6.16 -52.49 -0.32 1.36 16 45 H 0.12 2.32 8.06 -52.48 -0.42 1.90 16 46 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 47 H 0.13 2.70 5.62 -52.49 -0.29 2.40 16 48 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 388.83 15.07 5.86 5.86 Total: -1.00 -31.44 388.83 -7.47 -38.91 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -6.00 Total: 10.99 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -2.45 Total: -19.18 kcal Atomic # 7 Polarization: -31.87 SS G_CDS: 0.52 Total: -31.35 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.38 Total: -19.83 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.44 -7.47 -38.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180233653.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.323 kcal (2) G-P(sol) polarization free energy of solvation -31.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds