Wall clock time and date at job start Tue Mar 31 2020 18:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47234 * 2 1 4 4 C 1.52999 * 109.47232 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.46896 * 299.99992 * 4 3 2 6 6 C 1.52998 * 109.47302 * 59.99349 * 4 3 2 7 7 O 1.42899 * 109.46847 * 65.00470 * 6 4 3 8 8 N 1.46495 * 109.47190 * 180.02562 * 4 3 2 9 9 C 1.34778 * 119.99947 * 179.97438 * 8 4 3 10 10 O 1.21719 * 120.00056 * 359.97438 * 9 8 4 11 11 C 1.46255 * 119.99683 * 180.02562 * 9 8 4 12 12 C 1.35029 * 119.99570 * 179.97438 * 11 9 8 13 13 C 1.46965 * 119.99584 * 179.97438 * 12 11 9 14 14 C 1.40022 * 120.10157 * 359.45305 * 13 12 11 15 15 C 1.37596 * 119.89269 * 179.69699 * 14 13 12 16 16 C 1.39177 * 120.10258 * 0.60002 * 15 14 13 17 17 O 1.35574 * 119.89788 * 179.69642 * 16 15 14 18 18 C 1.34776 * 117.00213 * 174.41927 * 17 16 15 19 19 H 1.08006 * 119.99458 * 5.06162 * 18 17 16 20 20 C 1.38711 * 120.00529 * 185.05418 * 18 17 16 21 21 N 1.31517 * 119.99798 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00356 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46757 * 90.00594 * 22 20 18 24 24 H 1.48508 * 109.47511 * 210.00247 * 22 20 18 25 25 H 1.48497 * 109.47280 * 330.00610 * 22 20 18 26 26 C 1.39170 * 120.20383 * 359.67511 * 16 15 14 27 27 C 1.37599 * 120.10134 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.46762 * 300.00342 * 1 2 3 29 29 H 1.08997 * 109.47052 * 59.99821 * 1 2 3 30 30 H 1.09001 * 109.47293 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47003 * 240.00117 * 2 1 3 32 32 H 1.09002 * 109.47492 * 120.00332 * 2 1 3 33 33 H 1.09000 * 109.47030 * 60.00133 * 3 2 1 34 34 H 1.08994 * 109.46753 * 300.00054 * 3 2 1 35 35 H 1.09000 * 109.47072 * 300.00084 * 5 4 3 36 36 H 1.09001 * 109.46954 * 60.00038 * 5 4 3 37 37 H 1.08999 * 109.47173 * 180.02562 * 5 4 3 38 38 H 1.09001 * 109.47128 * 185.00287 * 6 4 3 39 39 H 1.08997 * 109.47355 * 305.00734 * 6 4 3 40 40 H 0.96701 * 114.00657 * 179.97438 * 7 6 4 41 41 H 0.96997 * 120.00109 * 359.97438 * 8 4 3 42 42 H 1.07997 * 120.00400 * 0.02562 * 11 9 8 43 43 H 1.07995 * 120.00043 * 359.72553 * 12 11 9 44 44 H 1.07996 * 120.04869 * 359.97438 * 14 13 12 45 45 H 1.08003 * 119.94749 * 180.27231 * 15 14 13 46 46 H 0.97002 * 120.00056 * 180.02562 * 21 20 18 47 47 H 1.08002 * 119.94913 * 180.02562 * 26 16 15 48 48 H 1.08001 * 120.05393 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0805 0.7211 1.2484 6 6 4.0795 0.7214 -1.2501 7 8 3.7011 1.4595 -2.4137 8 7 4.0584 2.8237 0.0000 9 6 5.3835 3.0700 0.0001 10 8 6.1744 2.1448 0.0001 11 6 5.8709 4.4489 0.0013 12 6 7.1985 4.6956 0.0019 13 6 7.6883 6.0812 0.0025 14 6 6.7803 7.1470 -0.0091 15 6 7.2436 8.4426 -0.0022 16 6 8.6124 8.6945 0.0038 17 8 9.0643 9.9727 0.0044 18 6 10.3945 10.1514 0.1270 19 1 11.0554 9.2972 0.1367 20 6 10.9149 11.4322 0.2405 21 7 10.1100 12.4723 0.2290 22 14 12.7585 11.6797 0.4112 23 1 13.3658 11.8206 -0.9367 24 1 13.0219 12.9078 1.2036 25 1 13.3534 10.5076 1.1021 26 6 9.5186 7.6383 0.0095 27 6 9.0645 6.3394 0.0089 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.7175 1.2348 2.1385 36 1 3.7172 -0.3066 1.2483 37 1 5.1705 0.7214 1.2482 38 1 5.1659 0.6431 -1.2068 39 1 3.6449 -0.2771 -1.2960 40 1 3.9920 1.0600 -3.2449 41 1 3.4281 3.5610 0.0003 42 1 5.1692 5.2698 0.0025 43 1 7.9003 3.8747 0.0060 44 1 5.7181 6.9524 -0.0190 45 1 6.5440 9.2654 -0.0067 46 1 10.4739 13.3680 0.3080 47 1 10.5799 7.8385 0.0145 48 1 9.7685 5.5203 0.0138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180233653.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:46 Heat of formation + Delta-G solvation = -107.703139 kcal Electronic energy + Delta-G solvation = -27416.370082 eV Core-core repulsion = 23436.097811 eV Total energy + Delta-G solvation = -3980.272271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.26436 -40.80673 -38.87339 -38.31437 -36.48957 -34.72340 -34.61115 -33.98820 -31.99094 -31.83400 -29.52831 -27.73182 -27.50036 -26.91473 -25.06532 -23.78735 -23.20090 -21.85387 -20.59909 -20.31785 -19.70417 -18.83144 -18.33889 -18.16651 -17.13481 -16.48648 -16.45349 -16.20072 -16.02431 -15.88837 -15.61472 -15.56046 -15.06093 -14.91011 -14.60580 -14.31869 -14.28452 -14.09610 -13.68698 -13.59718 -13.32569 -13.16631 -13.08496 -13.05257 -12.76971 -12.69725 -12.52539 -12.39040 -12.21113 -12.13090 -11.97699 -11.55276 -11.49940 -11.21561 -11.11330 -10.97332 -10.55515 -10.42351 -9.96829 -9.89585 -8.67304 -8.52034 -6.18367 -0.22142 0.58056 1.16158 1.35766 1.46163 1.53028 2.15391 2.28061 2.43448 2.86924 3.17982 3.32257 3.42237 3.70343 3.87152 3.91729 3.94857 4.08422 4.17447 4.24926 4.30120 4.35135 4.43751 4.47164 4.57599 4.58304 4.66909 4.70855 4.77716 4.86835 4.94165 4.96406 5.01055 5.03645 5.06678 5.19510 5.22203 5.27193 5.34211 5.35718 5.44212 5.50537 5.58484 5.63349 5.68160 5.82500 5.97315 6.10428 6.70750 6.84328 6.92203 7.37875 7.69346 8.69993 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.033499 B = 0.001718 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.646130 B =16291.644551 C =16625.074138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.111 4.111 4 C 0.175 3.825 5 C -0.162 4.162 6 C 0.064 3.936 7 O -0.580 6.580 8 N -0.704 5.704 9 C 0.554 3.446 10 O -0.584 6.584 11 C -0.246 4.246 12 C 0.013 3.987 13 C -0.169 4.169 14 C -0.039 4.039 15 C -0.207 4.207 16 C 0.129 3.871 17 O -0.220 6.220 18 C -0.418 4.418 19 H 0.106 0.894 20 C -0.018 4.018 21 N -0.914 5.914 22 Si 1.019 2.981 23 H -0.263 1.263 24 H -0.271 1.271 25 H -0.253 1.253 26 C -0.248 4.248 27 C -0.041 4.041 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.040 0.960 39 H 0.070 0.930 40 H 0.390 0.610 41 H 0.410 0.590 42 H 0.145 0.855 43 H 0.125 0.875 44 H 0.158 0.842 45 H 0.122 0.878 46 H 0.275 0.725 47 H 0.125 0.875 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.140 -25.034 -0.592 29.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.149 4.149 4 C 0.089 3.911 5 C -0.220 4.220 6 C -0.015 4.015 7 O -0.387 6.387 8 N -0.354 5.354 9 C 0.346 3.654 10 O -0.468 6.468 11 C -0.266 4.266 12 C -0.007 4.007 13 C -0.170 4.170 14 C -0.057 4.057 15 C -0.226 4.226 16 C 0.077 3.923 17 O -0.125 6.125 18 C -0.493 4.493 19 H 0.123 0.877 20 C -0.217 4.217 21 N -0.550 5.550 22 Si 0.838 3.162 23 H -0.188 1.188 24 H -0.195 1.195 25 H -0.176 1.176 26 C -0.267 4.267 27 C -0.059 4.059 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.239 0.761 41 H 0.246 0.754 42 H 0.163 0.837 43 H 0.143 0.857 44 H 0.175 0.825 45 H 0.140 0.860 46 H 0.084 0.916 47 H 0.143 0.857 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.002 -24.846 -0.145 29.553 hybrid contribution 0.973 0.666 -0.445 1.260 sum -15.029 -24.180 -0.589 28.476 Atomic orbital electron populations 1.21747 0.95021 1.02089 1.01938 1.21617 0.96503 0.95281 1.02607 1.21739 0.91045 0.98975 1.03093 1.20497 0.95149 0.81525 0.93918 1.22198 1.02180 1.01345 0.96276 1.22653 0.98772 0.94611 0.85423 1.86398 1.81306 1.54089 1.16910 1.45785 1.06368 1.08798 1.74450 1.18384 0.82541 0.89398 0.75121 1.90700 1.56506 1.46947 1.52605 1.22821 0.96838 0.95571 1.11386 1.22136 0.95913 0.93814 0.88822 1.18799 0.93103 0.92827 1.12282 1.21270 1.00311 0.89882 0.94239 1.20414 0.91937 0.98313 1.11923 1.20175 0.94454 0.84951 0.92717 1.83884 1.26364 1.22658 1.79603 1.21904 0.79698 0.94997 1.52745 0.87719 1.26611 1.06042 0.93519 0.95525 1.70154 1.37933 0.99351 1.47612 0.84581 0.73523 0.78910 0.79200 1.18752 1.19542 1.17623 1.21201 1.00072 0.92986 1.12487 1.21311 0.95247 0.95494 0.93836 0.92429 0.92935 0.92093 0.91727 0.90908 0.90479 0.91134 0.91552 0.89688 0.92768 0.94162 0.91196 0.76094 0.75360 0.83706 0.85690 0.82510 0.85975 0.91604 0.85715 0.83788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 71.98 0.71 -0.54 16 2 C -0.12 -1.15 5.24 30.60 0.16 -0.99 16 3 C -0.11 -1.31 4.28 30.60 0.13 -1.18 16 4 C 0.17 2.87 0.61 3.61 0.00 2.87 16 5 C -0.16 -2.68 8.05 71.98 0.58 -2.10 16 6 C 0.06 1.13 5.42 71.98 0.39 1.52 16 7 O -0.58 -10.32 12.96 -148.98 -1.93 -12.25 16 8 N -0.70 -13.22 4.87 -427.24 -2.08 -15.30 16 9 C 0.55 13.89 7.16 86.33 0.62 14.51 16 10 O -0.58 -18.04 12.49 -4.41 -0.06 -18.09 16 11 C -0.25 -5.91 9.41 23.62 0.22 -5.69 16 12 C 0.01 0.36 9.45 23.82 0.23 0.58 16 13 C -0.17 -5.41 5.87 -20.13 -0.12 -5.53 16 14 C -0.04 -1.27 9.40 22.55 0.21 -1.06 16 15 C -0.21 -8.41 9.97 22.34 0.22 -8.18 16 16 C 0.13 6.23 6.66 22.72 0.15 6.38 16 17 O -0.22 -12.86 9.74 -20.26 -0.20 -13.05 16 18 C -0.42 -23.67 9.48 67.93 0.64 -23.03 16 19 H 0.11 5.42 5.18 -2.91 -0.02 5.41 16 20 C -0.02 -1.01 5.49 84.85 0.47 -0.54 16 21 N -0.91 -54.63 13.67 21.62 0.30 -54.34 16 22 Si 1.02 41.70 29.55 68.60 2.03 43.73 16 23 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 24 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 25 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 26 C -0.25 -10.55 9.14 22.34 0.20 -10.34 16 27 C -0.04 -1.41 9.78 22.55 0.22 -1.19 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.63 6.32 -2.39 -0.02 0.62 16 32 H 0.07 0.61 6.43 -2.39 -0.02 0.59 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.96 7.82 -2.39 -0.02 0.94 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.03 6.43 -2.39 -0.02 1.02 16 37 H 0.05 1.23 6.16 -2.39 -0.01 1.22 16 38 H 0.04 0.94 6.32 -2.39 -0.02 0.93 16 39 H 0.07 0.92 6.17 -2.39 -0.01 0.91 16 40 H 0.39 4.15 9.12 -74.06 -0.68 3.47 16 41 H 0.41 5.92 8.45 -92.71 -0.78 5.13 16 42 H 0.15 2.80 6.07 -2.91 -0.02 2.78 16 43 H 0.13 3.46 7.52 -2.91 -0.02 3.44 16 44 H 0.16 3.77 6.16 -2.91 -0.02 3.75 16 45 H 0.12 4.82 8.06 -2.91 -0.02 4.79 16 46 H 0.27 15.03 8.31 -92.71 -0.77 14.25 16 47 H 0.13 5.34 5.62 -2.91 -0.02 5.33 16 48 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -73.21 388.83 2.65 -70.56 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: -0.45 Total: 33.26 kcal Atomic # 6 Polarization: -39.55 SS G_CDS: 5.04 Total: -34.51 kcal Atomic # 7 Polarization: -67.86 SS G_CDS: -1.78 Total: -69.64 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -2.18 Total: -43.40 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -73.21 2.65 -70.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180233653.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.145 kcal (2) G-P(sol) polarization free energy of solvation -73.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds