Wall clock time and date at job start Tue Mar 31 2020 19:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46710 * 2 1 4 4 C 1.52992 * 109.47187 * 240.00050 * 2 1 3 5 5 C 1.53002 * 109.47150 * 119.99578 * 2 1 3 6 6 H 1.08994 * 109.47114 * 174.13472 * 5 2 1 7 7 C 1.52999 * 109.47261 * 294.13864 * 5 2 1 8 8 O 1.42899 * 109.47059 * 58.19532 * 7 5 2 9 9 N 1.46508 * 109.46997 * 54.13828 * 5 2 1 10 10 C 1.34767 * 119.99719 * 154.99409 * 9 5 2 11 11 O 1.21720 * 120.00696 * 0.02562 * 10 9 5 12 12 C 1.46261 * 119.99757 * 179.97438 * 10 9 5 13 13 C 1.35027 * 119.99988 * 180.02562 * 12 10 9 14 14 C 1.46964 * 119.99701 * 180.02562 * 13 12 10 15 15 C 1.40023 * 120.09407 * 179.97438 * 14 13 12 16 16 C 1.37598 * 119.89213 * 179.97438 * 15 14 13 17 17 C 1.39178 * 120.10297 * 0.28008 * 16 15 14 18 18 O 1.35576 * 119.89955 * 179.70117 * 17 16 15 19 19 C 1.34783 * 116.99879 * 354.56897 * 18 17 16 20 20 H 1.08005 * 119.99872 * 5.07411 * 19 18 17 21 21 C 1.38715 * 120.00032 * 185.07366 * 19 18 17 22 22 N 1.31506 * 120.00252 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99828 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47087 * 89.99951 * 23 21 19 25 25 H 1.48504 * 109.47014 * 210.00277 * 23 21 19 26 26 H 1.48503 * 109.47282 * 329.99902 * 23 21 19 27 27 C 1.39180 * 120.20089 * 359.44685 * 17 16 15 28 28 C 1.37594 * 120.10085 * 0.55256 * 27 17 16 29 29 H 1.09007 * 109.47326 * 310.17996 * 1 2 3 30 30 H 1.09002 * 109.47592 * 70.18646 * 1 2 3 31 31 H 1.09006 * 109.47107 * 190.18580 * 1 2 3 32 32 H 1.09004 * 109.46891 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47348 * 299.99682 * 3 2 1 34 34 H 1.09003 * 109.47149 * 60.00267 * 3 2 1 35 35 H 1.09002 * 109.47353 * 299.99570 * 4 2 1 36 36 H 1.09004 * 109.47234 * 59.99538 * 4 2 1 37 37 H 1.08998 * 109.47606 * 179.97438 * 4 2 1 38 38 H 1.09001 * 109.46732 * 178.19614 * 7 5 2 39 39 H 1.08999 * 109.46948 * 298.19655 * 7 5 2 40 40 H 0.96705 * 113.99575 * 179.97438 * 8 7 5 41 41 H 0.97005 * 119.99507 * 335.00091 * 9 5 2 42 42 H 1.07998 * 119.99718 * 0.02562 * 12 10 9 43 43 H 1.07992 * 119.99850 * 359.97438 * 13 12 10 44 44 H 1.07996 * 120.05441 * 359.96412 * 15 14 13 45 45 H 1.07997 * 119.95233 * 180.02562 * 16 15 14 46 46 H 0.97003 * 120.00187 * 179.97438 * 22 21 19 47 47 H 1.07997 * 119.94610 * 180.27638 * 27 17 16 48 48 H 1.07996 * 120.04896 * 179.74948 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.1249 -0.8130 1.1984 7 6 1.6539 0.0802 2.4941 8 8 0.2341 0.2365 2.5386 9 7 1.4399 -2.0557 1.3220 10 6 2.0680 -3.0413 1.9930 11 8 3.1336 -2.8227 2.5391 12 6 1.4686 -4.3735 2.0661 13 6 2.0976 -5.3609 2.7388 14 6 1.4956 -6.6995 2.8117 15 6 2.1464 -7.7251 3.5083 16 6 1.5787 -8.9768 3.5743 17 6 0.3624 -9.2257 2.9452 18 8 -0.1903 -10.4621 3.0078 19 6 0.5404 -11.4299 3.5963 20 1 1.4828 -11.1860 4.0641 21 6 0.0819 -12.7390 3.6011 22 7 0.7945 -13.6832 4.1757 23 14 -1.5484 -13.1607 2.7925 24 1 -1.3188 -13.5085 1.3673 25 1 -2.1631 -14.3177 3.4917 26 1 -2.4596 -11.9910 2.8760 27 6 -0.2908 -8.2078 2.2564 28 6 0.2693 -6.9531 2.1851 29 1 -0.3634 0.6631 0.7852 30 1 -0.3634 0.3483 -0.9668 31 1 -0.3634 -1.0115 0.1817 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 1.9892 -0.4497 3.3857 39 1 2.1264 1.0616 2.4555 40 1 -0.0828 0.7358 3.3037 41 1 0.5905 -2.2298 0.8870 42 1 0.5229 -4.5673 1.5819 43 1 3.0435 -5.1671 3.2225 44 1 3.0924 -7.5341 3.9928 45 1 2.0796 -9.7684 4.1117 46 1 0.4738 -14.5986 4.1794 47 1 -1.2366 -8.4044 1.7735 48 1 -0.2363 -6.1650 1.6470 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183652295.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:14 Heat of formation + Delta-G solvation = -78.976530 kcal Electronic energy + Delta-G solvation = -27654.381374 eV Core-core repulsion = 23675.354782 eV Total energy + Delta-G solvation = -3979.026591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.32827 -39.34822 -38.32179 -37.00665 -36.05175 -33.57975 -33.21413 -32.44938 -30.52260 -29.48619 -28.34921 -27.49553 -27.25376 -25.61978 -23.91318 -22.58311 -22.23216 -20.67819 -19.65285 -18.88775 -18.03668 -17.74840 -17.43095 -17.04367 -16.51219 -15.41205 -15.11664 -15.01800 -14.87749 -14.30948 -14.18382 -14.04776 -13.95264 -13.85987 -13.62654 -13.47043 -12.91587 -12.83531 -12.77603 -12.60455 -12.42483 -12.39026 -12.08292 -11.89500 -11.85701 -11.78170 -11.21093 -11.07863 -11.01676 -10.92087 -10.82054 -10.75272 -10.27054 -10.10593 -9.75266 -9.63779 -9.53898 -9.08780 -8.89757 -8.45890 -7.22752 -6.59550 -4.23371 1.01318 2.04457 2.49502 3.12361 3.16223 3.20388 3.29567 3.54033 3.99458 4.09494 4.26775 4.44028 4.51300 4.63542 4.64312 4.93320 4.94793 4.98625 5.04149 5.10946 5.19085 5.31216 5.34293 5.43774 5.45225 5.46566 5.51273 5.59027 5.61824 5.67105 5.68667 5.86048 5.90325 5.95242 6.03816 6.03961 6.26415 6.31007 6.40973 6.50307 6.55644 6.68844 6.94285 7.10012 7.17841 7.30823 7.42837 7.58386 7.63698 7.85032 8.34638 8.73833 9.34200 10.46721 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026896 B = 0.001847 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.810925 B =15159.822244 C =15540.849721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.072 4.072 3 C -0.141 4.141 4 C -0.144 4.144 5 C 0.159 3.841 6 H 0.097 0.903 7 C 0.061 3.939 8 O -0.558 6.558 9 N -0.718 5.718 10 C 0.555 3.445 11 O -0.563 6.563 12 C -0.276 4.276 13 C 0.033 3.967 14 C -0.188 4.188 15 C -0.037 4.037 16 C -0.230 4.230 17 C 0.173 3.827 18 O -0.203 6.203 19 C -0.392 4.392 20 H 0.111 0.889 21 C 0.066 3.934 22 N -0.867 5.867 23 Si 0.907 3.093 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.258 1.258 27 C -0.199 4.199 28 C -0.045 4.045 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.370 0.630 41 H 0.401 0.599 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.117 0.883 45 H 0.137 0.863 46 H 0.283 0.717 47 H 0.121 0.879 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.573 27.372 -7.150 28.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 C -0.198 4.198 4 C -0.201 4.201 5 C 0.054 3.946 6 H 0.115 0.885 7 C -0.018 4.018 8 O -0.363 6.363 9 N -0.371 5.371 10 C 0.347 3.653 11 O -0.444 6.444 12 C -0.297 4.297 13 C 0.014 3.986 14 C -0.189 4.189 15 C -0.056 4.056 16 C -0.249 4.249 17 C 0.119 3.881 18 O -0.106 6.106 19 C -0.467 4.467 20 H 0.128 0.872 21 C -0.140 4.140 22 N -0.503 5.503 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.182 1.182 27 C -0.219 4.219 28 C -0.064 4.064 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.217 0.783 41 H 0.238 0.762 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.135 0.865 45 H 0.155 0.845 46 H 0.093 0.907 47 H 0.139 0.861 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.013 26.800 -7.339 27.786 hybrid contribution -0.899 -0.214 0.116 0.932 sum -0.886 26.585 -7.223 27.563 Atomic orbital electron populations 1.22053 0.93384 1.02622 1.01862 1.20740 0.97087 0.95429 0.93971 1.21913 1.00839 0.94896 1.02200 1.21907 1.01038 1.00540 0.96627 1.21006 0.98497 0.81955 0.93154 0.88528 1.22683 0.81921 0.98671 0.98543 1.86620 1.21470 1.78931 1.49291 1.45933 1.25516 1.09785 1.55821 1.18426 0.84200 0.85128 0.77558 1.90764 1.22750 1.83800 1.47051 1.22477 1.03679 0.92887 1.10622 1.22290 0.96305 0.90602 0.89436 1.18532 0.98233 0.93427 1.08743 1.21041 0.97755 0.91888 0.94900 1.21220 0.98256 0.98232 1.07173 1.19365 0.91121 0.85534 0.92108 1.83506 1.43097 1.15241 1.68723 1.20874 1.05183 0.85987 1.34616 0.87206 1.24538 0.99323 0.93921 0.96167 1.69616 1.38037 1.01747 1.40903 0.86157 0.82441 0.78696 0.79526 1.19645 1.20530 1.18209 1.20143 1.02578 0.92379 1.06755 1.20883 0.93860 0.95318 0.96305 0.89384 0.93558 0.93159 0.92658 0.92285 0.92092 0.92350 0.92477 0.92688 0.93144 0.92794 0.78289 0.76170 0.85971 0.85815 0.86544 0.84512 0.90674 0.86132 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 7.47 37.16 0.28 -0.75 16 2 C -0.07 -0.52 0.62 -154.51 -0.10 -0.62 16 3 C -0.14 -0.85 7.94 37.16 0.30 -0.56 16 4 C -0.14 -1.07 8.35 37.15 0.31 -0.76 16 5 C 0.16 1.47 1.78 -67.93 -0.12 1.35 16 6 H 0.10 1.03 7.58 -51.93 -0.39 0.64 16 7 C 0.06 0.50 6.25 37.16 0.23 0.73 16 8 O -0.56 -4.05 9.86 -35.23 -0.35 -4.40 16 9 N -0.72 -7.53 4.37 -55.25 -0.24 -7.77 16 10 C 0.55 7.62 7.70 -13.04 -0.10 7.52 16 11 O -0.56 -9.48 15.89 5.17 0.08 -9.40 16 12 C -0.28 -3.70 9.41 -37.50 -0.35 -4.05 16 13 C 0.03 0.50 9.45 -37.19 -0.35 0.15 16 14 C -0.19 -3.12 5.87 -105.03 -0.62 -3.74 16 15 C -0.04 -0.66 9.78 -39.15 -0.38 -1.04 16 16 C -0.23 -4.73 9.14 -39.47 -0.36 -5.09 16 17 C 0.17 3.80 6.66 -38.88 -0.26 3.55 16 18 O -0.20 -5.09 8.57 0.72 0.01 -5.09 16 19 C -0.39 -10.54 9.94 30.91 0.31 -10.23 16 20 H 0.11 3.01 5.41 -52.48 -0.28 2.73 16 21 C 0.07 1.77 5.49 -17.51 -0.10 1.67 16 22 N -0.87 -24.01 13.96 55.48 0.77 -23.24 16 23 Si 0.91 20.68 28.62 -169.99 -4.86 15.82 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 26 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 27 C -0.20 -3.73 9.97 -39.47 -0.39 -4.12 16 28 C -0.05 -0.74 9.40 -39.15 -0.37 -1.11 16 29 H 0.09 0.67 5.57 -51.93 -0.29 0.38 16 30 H 0.05 0.31 8.11 -51.93 -0.42 -0.11 16 31 H 0.05 0.38 5.91 -51.93 -0.31 0.08 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.35 6.38 -51.93 -0.33 0.02 16 35 H 0.06 0.47 7.78 -51.93 -0.40 0.07 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.35 6.45 -51.93 -0.33 0.01 16 40 H 0.37 1.39 9.12 45.56 0.42 1.81 16 41 H 0.40 3.65 6.37 -40.82 -0.26 3.39 16 42 H 0.12 1.41 6.07 -52.49 -0.32 1.09 16 43 H 0.12 1.84 7.52 -52.49 -0.39 1.45 16 44 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 45 H 0.14 2.94 5.61 -52.49 -0.29 2.64 16 46 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.12 2.07 8.06 -52.49 -0.42 1.64 16 48 H 0.12 1.57 6.16 -52.49 -0.32 1.24 16 LS Contribution 386.99 15.07 5.83 5.83 Total: -1.00 -30.28 386.99 -6.87 -37.15 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.03 Total: 8.20 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -2.08 Total: -17.11 kcal Atomic # 7 Polarization: -31.54 SS G_CDS: 0.53 Total: -31.01 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.26 Total: -18.88 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.86 Total: 15.82 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.28 -6.87 -37.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183652295.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.827 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds