Wall clock time and date at job start Tue Mar 31 2020 19:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46710 * 2 1 4 4 C 1.52992 * 109.47187 * 240.00050 * 2 1 3 5 5 C 1.53002 * 109.47150 * 119.99578 * 2 1 3 6 6 H 1.08994 * 109.47114 * 174.13472 * 5 2 1 7 7 C 1.52999 * 109.47261 * 294.13864 * 5 2 1 8 8 O 1.42899 * 109.47059 * 58.19532 * 7 5 2 9 9 N 1.46508 * 109.46997 * 54.13828 * 5 2 1 10 10 C 1.34767 * 119.99719 * 154.99409 * 9 5 2 11 11 O 1.21720 * 120.00696 * 0.02562 * 10 9 5 12 12 C 1.46261 * 119.99757 * 179.97438 * 10 9 5 13 13 C 1.35027 * 119.99988 * 180.02562 * 12 10 9 14 14 C 1.46964 * 119.99701 * 180.02562 * 13 12 10 15 15 C 1.40023 * 120.09407 * 179.97438 * 14 13 12 16 16 C 1.37598 * 119.89213 * 179.97438 * 15 14 13 17 17 C 1.39178 * 120.10297 * 0.28008 * 16 15 14 18 18 O 1.35576 * 119.89955 * 179.70117 * 17 16 15 19 19 C 1.34783 * 116.99879 * 354.56897 * 18 17 16 20 20 H 1.08005 * 119.99872 * 5.07411 * 19 18 17 21 21 C 1.38715 * 120.00032 * 185.07366 * 19 18 17 22 22 N 1.31506 * 120.00252 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99828 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47087 * 89.99951 * 23 21 19 25 25 H 1.48504 * 109.47014 * 210.00277 * 23 21 19 26 26 H 1.48503 * 109.47282 * 329.99902 * 23 21 19 27 27 C 1.39180 * 120.20089 * 359.44685 * 17 16 15 28 28 C 1.37594 * 120.10085 * 0.55256 * 27 17 16 29 29 H 1.09007 * 109.47326 * 310.17996 * 1 2 3 30 30 H 1.09002 * 109.47592 * 70.18646 * 1 2 3 31 31 H 1.09006 * 109.47107 * 190.18580 * 1 2 3 32 32 H 1.09004 * 109.46891 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47348 * 299.99682 * 3 2 1 34 34 H 1.09003 * 109.47149 * 60.00267 * 3 2 1 35 35 H 1.09002 * 109.47353 * 299.99570 * 4 2 1 36 36 H 1.09004 * 109.47234 * 59.99538 * 4 2 1 37 37 H 1.08998 * 109.47606 * 179.97438 * 4 2 1 38 38 H 1.09001 * 109.46732 * 178.19614 * 7 5 2 39 39 H 1.08999 * 109.46948 * 298.19655 * 7 5 2 40 40 H 0.96705 * 113.99575 * 179.97438 * 8 7 5 41 41 H 0.97005 * 119.99507 * 335.00091 * 9 5 2 42 42 H 1.07998 * 119.99718 * 0.02562 * 12 10 9 43 43 H 1.07992 * 119.99850 * 359.97438 * 13 12 10 44 44 H 1.07996 * 120.05441 * 359.96412 * 15 14 13 45 45 H 1.07997 * 119.95233 * 180.02562 * 16 15 14 46 46 H 0.97003 * 120.00187 * 179.97438 * 22 21 19 47 47 H 1.07997 * 119.94610 * 180.27638 * 27 17 16 48 48 H 1.07996 * 120.04896 * 179.74948 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.1249 -0.8130 1.1984 7 6 1.6539 0.0802 2.4941 8 8 0.2341 0.2365 2.5386 9 7 1.4399 -2.0557 1.3220 10 6 2.0680 -3.0413 1.9930 11 8 3.1336 -2.8227 2.5391 12 6 1.4686 -4.3735 2.0661 13 6 2.0976 -5.3609 2.7388 14 6 1.4956 -6.6995 2.8117 15 6 2.1464 -7.7251 3.5083 16 6 1.5787 -8.9768 3.5743 17 6 0.3624 -9.2257 2.9452 18 8 -0.1903 -10.4621 3.0078 19 6 0.5404 -11.4299 3.5963 20 1 1.4828 -11.1860 4.0641 21 6 0.0819 -12.7390 3.6011 22 7 0.7945 -13.6832 4.1757 23 14 -1.5484 -13.1607 2.7925 24 1 -1.3188 -13.5085 1.3673 25 1 -2.1631 -14.3177 3.4917 26 1 -2.4596 -11.9910 2.8760 27 6 -0.2908 -8.2078 2.2564 28 6 0.2693 -6.9531 2.1851 29 1 -0.3634 0.6631 0.7852 30 1 -0.3634 0.3483 -0.9668 31 1 -0.3634 -1.0115 0.1817 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 1.9892 -0.4497 3.3857 39 1 2.1264 1.0616 2.4555 40 1 -0.0828 0.7358 3.3037 41 1 0.5905 -2.2298 0.8870 42 1 0.5229 -4.5673 1.5819 43 1 3.0435 -5.1671 3.2225 44 1 3.0924 -7.5341 3.9928 45 1 2.0796 -9.7684 4.1117 46 1 0.4738 -14.5986 4.1794 47 1 -1.2366 -8.4044 1.7735 48 1 -0.2363 -6.1650 1.6470 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183652295.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:12 Heat of formation + Delta-G solvation = -98.667630 kcal Electronic energy + Delta-G solvation = -27655.235244 eV Core-core repulsion = 23675.354782 eV Total energy + Delta-G solvation = -3979.880462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.25168 -40.92151 -39.27645 -38.52579 -36.63519 -34.76373 -34.51140 -34.15735 -32.01571 -30.44111 -29.47293 -28.06440 -27.96853 -27.34478 -24.97462 -23.86173 -23.50703 -21.91605 -20.78943 -20.00467 -19.42099 -19.11699 -18.47336 -18.07599 -17.35705 -16.69037 -16.45273 -16.15276 -15.82386 -15.76840 -15.63289 -15.41614 -15.11438 -14.89222 -14.54778 -14.38945 -14.24450 -14.11828 -14.06035 -13.55200 -13.43361 -13.35736 -13.18933 -12.93816 -12.73922 -12.69536 -12.61572 -12.42712 -12.35870 -11.94139 -11.69129 -11.52141 -11.43557 -11.31290 -11.16035 -10.98960 -10.68086 -10.61104 -9.98516 -9.92654 -8.74566 -8.53904 -6.25720 -0.28253 0.54228 1.10719 1.32314 1.37239 1.52171 2.26013 2.27915 2.36528 2.80003 2.99668 3.14704 3.40836 3.62701 3.80497 3.89974 3.91714 4.03986 4.07469 4.27615 4.32316 4.36574 4.41826 4.45234 4.50860 4.61910 4.70755 4.77075 4.82990 4.84622 4.87900 4.98142 5.10803 5.12553 5.15080 5.21203 5.26440 5.27910 5.35331 5.38975 5.47825 5.55014 5.60893 5.69908 5.75882 5.79557 5.82897 6.13785 6.62917 6.79174 6.90530 7.30239 7.50267 8.56862 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026896 B = 0.001847 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.810925 B =15159.822244 C =15540.849721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.065 4.065 3 C -0.140 4.140 4 C -0.144 4.144 5 C 0.153 3.847 6 H 0.080 0.920 7 C 0.068 3.932 8 O -0.563 6.563 9 N -0.701 5.701 10 C 0.548 3.452 11 O -0.596 6.596 12 C -0.240 4.240 13 C 0.010 3.990 14 C -0.160 4.160 15 C -0.046 4.046 16 C -0.243 4.243 17 C 0.136 3.864 18 O -0.233 6.233 19 C -0.404 4.404 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.917 5.917 23 Si 0.972 3.028 24 H -0.265 1.265 25 H -0.268 1.268 26 H -0.260 1.260 27 C -0.194 4.194 28 C -0.040 4.040 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.026 0.974 39 H 0.074 0.926 40 H 0.387 0.613 41 H 0.411 0.589 42 H 0.152 0.848 43 H 0.122 0.878 44 H 0.139 0.861 45 H 0.114 0.886 46 H 0.286 0.714 47 H 0.139 0.861 48 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.241 31.535 -9.164 32.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.066 4.066 3 C -0.197 4.197 4 C -0.202 4.202 5 C 0.048 3.952 6 H 0.098 0.902 7 C -0.011 4.011 8 O -0.371 6.371 9 N -0.353 5.353 10 C 0.339 3.661 11 O -0.479 6.479 12 C -0.260 4.260 13 C -0.009 4.009 14 C -0.161 4.161 15 C -0.064 4.064 16 C -0.262 4.262 17 C 0.086 3.914 18 O -0.139 6.139 19 C -0.480 4.480 20 H 0.101 0.899 21 C -0.188 4.188 22 N -0.556 5.556 23 Si 0.793 3.207 24 H -0.190 1.190 25 H -0.193 1.193 26 H -0.184 1.184 27 C -0.212 4.212 28 C -0.058 4.058 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.092 0.908 40 H 0.237 0.763 41 H 0.250 0.750 42 H 0.169 0.831 43 H 0.140 0.860 44 H 0.156 0.844 45 H 0.132 0.868 46 H 0.096 0.904 47 H 0.157 0.843 48 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.670 31.051 -9.370 32.477 hybrid contribution -0.231 -0.840 0.648 1.086 sum -1.902 30.210 -8.723 31.502 Atomic orbital electron populations 1.22024 0.92957 1.02358 1.02285 1.20705 0.97267 0.95896 0.92705 1.21910 1.00924 0.93992 1.02911 1.21917 1.00721 1.00299 0.97219 1.21153 0.97670 0.81492 0.94883 0.90198 1.22515 0.82712 0.99149 0.96740 1.86568 1.20619 1.79424 1.50486 1.45878 1.25414 1.09797 1.54212 1.18554 0.83947 0.85823 0.77746 1.90768 1.24295 1.84340 1.48513 1.22803 1.03623 0.92062 1.07518 1.22156 0.97060 0.90061 0.91669 1.18818 0.97675 0.93642 1.05918 1.21285 0.98772 0.90982 0.95347 1.21224 0.98436 0.99051 1.07504 1.19933 0.92303 0.85491 0.93699 1.83463 1.43464 1.15956 1.71039 1.20756 1.04884 0.87125 1.35214 0.89852 1.25336 1.02768 0.93690 0.96967 1.69703 1.40085 1.02221 1.43620 0.85203 0.78239 0.78434 0.78782 1.18961 1.19257 1.18381 1.20486 1.02990 0.92244 1.05526 1.21337 0.93449 0.95350 0.95668 0.89477 0.92816 0.93539 0.92618 0.91432 0.91557 0.93036 0.91367 0.93246 0.95542 0.90821 0.76321 0.74977 0.83069 0.85995 0.84359 0.86834 0.90379 0.84325 0.81821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 7.47 71.98 0.54 -1.00 16 2 C -0.07 -0.76 0.62 -52.18 -0.03 -0.79 16 3 C -0.14 -1.28 7.94 71.98 0.57 -0.71 16 4 C -0.14 -1.76 8.35 71.98 0.60 -1.16 16 5 C 0.15 2.45 1.78 44.99 0.08 2.53 16 6 H 0.08 1.59 7.58 -2.39 -0.02 1.57 16 7 C 0.07 0.95 6.25 71.98 0.45 1.40 16 8 O -0.56 -6.37 9.86 -148.98 -1.47 -7.84 16 9 N -0.70 -12.51 4.37 -446.91 -1.95 -14.46 16 10 C 0.55 13.41 7.70 86.33 0.66 14.08 16 11 O -0.60 -19.04 15.89 -4.41 -0.07 -19.11 16 12 C -0.24 -5.39 9.41 23.62 0.22 -5.16 16 13 C 0.01 0.28 9.45 23.82 0.23 0.50 16 14 C -0.16 -4.84 5.87 -20.13 -0.12 -4.96 16 15 C -0.05 -1.59 9.78 22.55 0.22 -1.36 16 16 C -0.24 -10.41 9.14 22.34 0.20 -10.20 16 17 C 0.14 6.11 6.66 22.72 0.15 6.27 16 18 O -0.23 -12.19 8.57 -20.35 -0.17 -12.37 16 19 C -0.40 -23.17 9.94 67.93 0.68 -22.50 16 20 H 0.08 5.02 5.41 -2.91 -0.02 5.01 16 21 C 0.01 0.67 5.49 84.86 0.47 1.14 16 22 N -0.92 -53.64 13.96 21.62 0.30 -53.34 16 23 Si 0.97 43.99 28.62 68.60 1.96 45.95 16 24 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 26 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 27 C -0.19 -6.87 9.97 22.34 0.22 -6.64 16 28 C -0.04 -1.16 9.40 22.55 0.21 -0.94 16 29 H 0.09 1.01 5.57 -2.38 -0.01 1.00 16 30 H 0.05 0.53 8.11 -2.39 -0.02 0.51 16 31 H 0.05 0.54 5.91 -2.38 -0.01 0.52 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 0.54 6.38 -2.39 -0.02 0.53 16 35 H 0.05 0.69 7.78 -2.39 -0.02 0.67 16 36 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.07 0.75 6.45 -2.39 -0.02 0.73 16 40 H 0.39 1.67 9.12 -74.05 -0.68 0.99 16 41 H 0.41 5.81 6.37 -92.70 -0.59 5.22 16 42 H 0.15 2.52 6.07 -2.91 -0.02 2.50 16 43 H 0.12 3.37 7.52 -2.91 -0.02 3.34 16 44 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 45 H 0.11 5.34 5.61 -2.91 -0.02 5.33 16 46 H 0.29 15.34 8.31 -92.71 -0.77 14.57 16 47 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 48 H 0.16 3.24 6.16 -2.91 -0.02 3.22 16 Total: -1.00 -69.85 386.99 3.69 -66.17 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -0.26 Total: 24.52 kcal Atomic # 6 Polarization: -34.87 SS G_CDS: 5.35 Total: -29.52 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: -1.65 Total: -67.80 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -1.71 Total: -39.32 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.96 Total: 45.95 kcal Total: -69.85 3.69 -66.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183652295.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.501 kcal (2) G-P(sol) polarization free energy of solvation -69.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds