Wall clock time and date at job start Tue Mar 31 2020 17:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38288 * 119.96760 * 2 1 4 4 C 1.38248 * 120.10556 * 180.02562 * 3 2 1 5 5 C 1.38164 * 120.05908 * 359.67312 * 4 3 2 6 6 C 1.38713 * 119.94207 * 0.58096 * 5 4 3 7 7 O 1.35903 * 120.05861 * 179.72020 * 6 5 4 8 8 C 1.42898 * 116.99569 * 359.72184 * 7 6 5 9 9 C 1.53005 * 109.46870 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46927 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.46927 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47160 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99855 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00197 * 180.02562 * 12 11 10 15 15 C 1.47581 * 134.49354 * 180.02562 * 14 12 11 16 16 C 1.53945 * 86.11895 * 155.35947 * 15 14 12 17 17 O 1.42904 * 113.73986 * 269.15696 * 16 15 14 18 18 C 1.50694 * 113.74220 * 137.95139 * 16 15 14 19 19 H 1.08000 * 120.00563 * 0.02562 * 18 16 15 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 16 15 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.47582 * 134.48982 * 359.97438 * 14 12 11 27 27 C 1.38117 * 119.97108 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47444 * 270.02058 * 1 2 3 29 29 H 1.09000 * 109.47376 * 30.02247 * 1 2 3 30 30 H 1.09002 * 109.46970 * 150.02338 * 1 2 3 31 31 H 1.07995 * 119.94880 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.96794 * 179.97438 * 4 3 2 33 33 H 1.07994 * 120.03096 * 180.29741 * 5 4 3 34 34 H 1.08994 * 109.47209 * 60.00571 * 8 7 6 35 35 H 1.09001 * 109.47358 * 300.00183 * 8 7 6 36 36 H 1.09008 * 109.46756 * 60.00548 * 9 8 7 37 37 H 1.09001 * 109.47279 * 300.00231 * 9 8 7 38 38 H 1.09008 * 109.46834 * 60.00744 * 10 9 8 39 39 H 1.09001 * 109.47451 * 300.00274 * 10 9 8 40 40 H 1.08994 * 109.46740 * 60.00432 * 11 10 9 41 41 H 1.09001 * 109.47279 * 300.00380 * 11 10 9 42 42 H 1.09001 * 113.77016 * 41.05438 * 15 14 12 43 43 H 1.09005 * 113.86980 * 269.67513 * 15 14 12 44 44 H 0.96699 * 113.99284 * 178.07513 * 17 16 15 45 45 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 46 46 H 1.09002 * 113.76615 * 90.34214 * 26 14 12 47 47 H 1.08991 * 113.77327 * 318.94082 * 26 14 12 48 48 H 1.07998 * 120.03103 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.2752 0.0072 0.0058 6 6 3.5846 -1.1958 0.0004 7 8 4.2658 -2.3718 0.0008 8 6 5.6927 -2.2948 0.0007 9 6 6.2796 -3.7078 0.0006 10 6 7.8074 -3.6255 -0.0001 11 6 8.3943 -5.0385 0.0004 12 6 9.8991 -4.9574 0.0003 13 8 10.4481 -3.8759 0.0003 14 7 10.6348 -6.0866 0.0002 15 6 12.0815 -6.3785 0.0005 16 6 11.7030 -7.7266 0.6403 17 8 11.6876 -7.7011 2.0691 18 6 12.4672 -8.8991 0.0818 19 1 13.2012 -8.7447 -0.6953 20 6 12.2294 -10.1693 0.5627 21 7 11.3359 -10.3574 1.5093 22 14 13.1762 -11.6228 -0.1302 23 1 12.4359 -12.1905 -1.2856 24 1 14.5190 -11.1718 -0.5760 25 1 13.3264 -12.6617 0.9202 26 6 10.3173 -7.5279 0.0006 27 6 2.1970 -1.1965 0.0005 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6565 2.1325 -0.0004 32 1 4.1175 2.1383 -0.0010 33 1 5.3552 0.0104 0.0102 34 1 6.0279 -1.7619 0.8905 35 1 6.0279 -1.7625 -0.8894 36 1 5.9444 -4.2404 -0.8895 37 1 5.9445 -4.2406 0.8906 38 1 8.1430 -3.0928 0.8898 39 1 8.1422 -3.0929 -0.8903 40 1 8.0588 -5.5715 -0.8892 41 1 8.0595 -5.5707 0.8908 42 1 12.6607 -5.7282 0.6560 43 1 12.5130 -6.4710 -0.9962 44 1 11.4218 -8.5379 2.4744 45 1 11.1684 -11.2510 1.8474 46 1 10.2281 -7.9583 -0.9969 47 1 9.4886 -7.7950 0.6561 48 1 1.6571 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186802311.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:40 Heat of formation + Delta-G solvation = -85.211445 kcal Electronic energy + Delta-G solvation = -26949.308282 eV Core-core repulsion = 22970.011324 eV Total energy + Delta-G solvation = -3979.296958 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.41519 -39.54104 -38.09385 -37.49712 -34.86215 -33.95072 -32.82301 -32.22162 -31.01611 -29.69771 -28.25908 -27.30199 -25.63591 -25.26985 -24.03069 -22.85860 -21.52951 -20.97832 -19.94126 -18.21088 -17.97772 -17.41144 -16.60223 -16.39358 -16.30087 -16.10184 -15.43855 -15.41799 -14.90343 -14.59483 -14.37159 -14.15506 -13.92262 -13.79395 -13.51413 -13.24977 -12.86467 -12.61331 -12.49794 -12.43205 -12.17155 -12.05887 -11.92329 -11.67993 -11.62011 -11.57036 -11.34757 -11.09883 -11.03309 -10.99712 -10.96119 -10.63183 -10.54185 -10.30841 -9.63584 -9.20354 -9.09734 -8.78778 -8.44907 -8.43105 -7.84850 -6.41668 -4.51851 1.01223 1.16895 2.88996 3.12734 3.20206 3.21491 3.24986 3.45677 3.58110 4.16761 4.47036 4.49663 4.69348 4.70912 4.75949 4.80259 4.86703 4.92720 5.03251 5.06653 5.17800 5.18654 5.23500 5.29886 5.41085 5.46319 5.56882 5.62218 5.65558 5.73475 5.77142 5.82605 5.95801 6.04113 6.14339 6.14917 6.17723 6.27565 6.29410 6.36661 6.49866 6.49949 6.61909 6.66800 7.08169 7.18797 7.61085 7.80215 8.49113 8.51390 8.75433 9.19485 9.43813 10.64993 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.029269 B = 0.001559 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.422858 B =17958.539594 C =18560.069081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.050 4.050 3 C -0.164 4.164 4 C -0.076 4.076 5 C -0.216 4.216 6 C 0.138 3.862 7 O -0.315 6.315 8 C 0.060 3.940 9 C -0.119 4.119 10 C -0.098 4.098 11 C -0.132 4.132 12 C 0.526 3.474 13 O -0.569 6.569 14 N -0.633 5.633 15 C 0.110 3.890 16 C 0.238 3.762 17 O -0.573 6.573 18 C -0.537 4.537 19 H 0.071 0.929 20 C 0.072 3.928 21 N -0.899 5.899 22 Si 0.908 3.092 23 H -0.277 1.277 24 H -0.271 1.271 25 H -0.283 1.283 26 C 0.077 3.923 27 C -0.157 4.157 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.273 0.727 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.525 15.552 -3.338 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.050 4.050 3 C -0.182 4.182 4 C -0.094 4.094 5 C -0.235 4.235 6 C 0.092 3.908 7 O -0.229 6.229 8 C -0.015 4.015 9 C -0.156 4.156 10 C -0.136 4.136 11 C -0.172 4.172 12 C 0.316 3.684 13 O -0.450 6.450 14 N -0.366 5.366 15 C -0.012 4.012 16 C 0.196 3.804 17 O -0.386 6.386 18 C -0.575 4.575 19 H 0.089 0.911 20 C -0.130 4.130 21 N -0.539 5.539 22 Si 0.735 3.265 23 H -0.203 1.203 24 H -0.195 1.195 25 H -0.209 1.209 26 C -0.046 4.046 27 C -0.175 4.175 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.248 0.752 45 H 0.084 0.916 46 H 0.100 0.900 47 H 0.087 0.913 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.312 16.536 -3.305 24.893 hybrid contribution 0.408 -1.313 -0.290 1.405 sum -17.904 15.222 -3.595 23.774 Atomic orbital electron populations 1.20812 0.90769 1.02979 1.02586 1.19708 0.96039 0.92293 0.96935 1.20933 0.94172 0.97518 1.05573 1.20942 0.94173 0.97442 0.96858 1.21313 1.00519 0.92294 1.09341 1.19023 0.91761 0.84842 0.95149 1.86061 1.20604 1.28017 1.88218 1.22892 0.77476 0.99465 1.01669 1.21577 0.95333 0.94771 1.03927 1.21200 0.92224 0.96373 1.03821 1.21521 0.92574 0.98718 1.04382 1.20204 0.89081 0.82842 0.76260 1.90624 1.73909 1.27688 1.52764 1.50200 1.09468 1.06373 1.70595 1.23445 0.81504 0.96237 0.99995 1.19841 0.89469 0.90726 0.80331 1.86059 1.91452 1.42110 1.18947 1.21522 1.23195 0.91161 1.21640 0.91063 1.25068 0.94341 0.99316 0.94290 1.69318 1.33082 1.23658 1.27851 0.86328 0.80297 0.81166 0.78710 1.20322 1.19542 1.20890 1.24309 1.02991 0.76272 1.01036 1.20309 0.90945 0.98652 1.07629 0.90870 0.91320 0.91296 0.86043 0.85797 0.85357 0.91771 0.91827 0.90669 0.90572 0.90909 0.91019 0.89258 0.89032 0.91228 0.89735 0.75192 0.91637 0.90031 0.91349 0.85264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.01 36.01 0.36 -0.29 16 2 C -0.05 -0.42 5.88 -104.65 -0.62 -1.04 16 3 C -0.16 -1.34 9.70 -39.56 -0.38 -1.72 16 4 C -0.08 -0.65 10.04 -39.60 -0.40 -1.05 16 5 C -0.22 -2.12 9.04 -39.43 -0.36 -2.48 16 6 C 0.14 1.52 6.69 -39.21 -0.26 1.26 16 7 O -0.32 -3.67 10.14 -19.44 -0.20 -3.86 16 8 C 0.06 0.60 4.74 37.16 0.18 0.78 16 9 C -0.12 -1.22 5.58 -26.73 -0.15 -1.37 16 10 C -0.10 -1.22 4.50 -26.73 -0.12 -1.34 16 11 C -0.13 -1.91 5.45 -27.88 -0.15 -2.06 16 12 C 0.53 10.31 8.06 -10.99 -0.09 10.22 16 13 O -0.57 -12.72 16.71 5.55 0.09 -12.63 16 14 N -0.63 -13.15 3.61 -178.32 -0.64 -13.79 16 15 C 0.11 2.40 8.23 -2.97 -0.02 2.37 16 16 C 0.24 5.63 1.44 -90.86 -0.13 5.50 16 17 O -0.57 -14.60 13.48 -35.23 -0.48 -15.07 16 18 C -0.54 -13.28 8.62 -34.44 -0.30 -13.58 16 19 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 20 C 0.07 1.77 5.40 -17.82 -0.10 1.68 16 21 N -0.90 -22.38 11.09 55.43 0.61 -21.76 16 22 Si 0.91 19.19 29.54 -169.99 -5.02 14.17 16 23 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 C 0.08 1.60 8.00 -2.99 -0.02 1.58 16 27 C -0.16 -1.56 9.64 -39.43 -0.38 -1.94 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.13 1.12 6.30 -52.49 -0.33 0.79 16 34 H 0.06 0.61 7.65 -51.93 -0.40 0.21 16 35 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 36 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.96 8.10 -51.92 -0.42 0.54 16 39 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.08 1.69 8.09 -51.93 -0.42 1.27 16 44 H 0.39 10.05 6.46 45.56 0.29 10.35 16 45 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 46 H 0.08 1.62 8.09 -51.93 -0.42 1.20 16 47 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 48 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 400.82 15.07 6.04 6.04 Total: -1.00 -29.07 400.82 -9.66 -38.73 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -7.13 Total: 11.66 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -2.94 Total: -3.49 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.03 Total: -35.55 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.58 Total: -31.56 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.07 -9.66 -38.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186802311.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.483 kcal (2) G-P(sol) polarization free energy of solvation -29.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds