Wall clock time and date at job start Tue Mar 31 2020 17:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38288 * 119.96760 * 2 1 4 4 C 1.38248 * 120.10556 * 180.02562 * 3 2 1 5 5 C 1.38164 * 120.05908 * 359.67312 * 4 3 2 6 6 C 1.38713 * 119.94207 * 0.58096 * 5 4 3 7 7 O 1.35903 * 120.05861 * 179.72020 * 6 5 4 8 8 C 1.42898 * 116.99569 * 359.72184 * 7 6 5 9 9 C 1.53005 * 109.46870 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46927 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.46927 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47160 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99855 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00197 * 180.02562 * 12 11 10 15 15 C 1.47581 * 134.49354 * 180.02562 * 14 12 11 16 16 C 1.53945 * 86.11895 * 155.35947 * 15 14 12 17 17 O 1.42904 * 113.73986 * 269.15696 * 16 15 14 18 18 C 1.50694 * 113.74220 * 137.95139 * 16 15 14 19 19 H 1.08000 * 120.00563 * 0.02562 * 18 16 15 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 16 15 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.47582 * 134.48982 * 359.97438 * 14 12 11 27 27 C 1.38117 * 119.97108 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47444 * 270.02058 * 1 2 3 29 29 H 1.09000 * 109.47376 * 30.02247 * 1 2 3 30 30 H 1.09002 * 109.46970 * 150.02338 * 1 2 3 31 31 H 1.07995 * 119.94880 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.96794 * 179.97438 * 4 3 2 33 33 H 1.07994 * 120.03096 * 180.29741 * 5 4 3 34 34 H 1.08994 * 109.47209 * 60.00571 * 8 7 6 35 35 H 1.09001 * 109.47358 * 300.00183 * 8 7 6 36 36 H 1.09008 * 109.46756 * 60.00548 * 9 8 7 37 37 H 1.09001 * 109.47279 * 300.00231 * 9 8 7 38 38 H 1.09008 * 109.46834 * 60.00744 * 10 9 8 39 39 H 1.09001 * 109.47451 * 300.00274 * 10 9 8 40 40 H 1.08994 * 109.46740 * 60.00432 * 11 10 9 41 41 H 1.09001 * 109.47279 * 300.00380 * 11 10 9 42 42 H 1.09001 * 113.77016 * 41.05438 * 15 14 12 43 43 H 1.09005 * 113.86980 * 269.67513 * 15 14 12 44 44 H 0.96699 * 113.99284 * 178.07513 * 17 16 15 45 45 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 46 46 H 1.09002 * 113.76615 * 90.34214 * 26 14 12 47 47 H 1.08991 * 113.77327 * 318.94082 * 26 14 12 48 48 H 1.07998 * 120.03103 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.2752 0.0072 0.0058 6 6 3.5846 -1.1958 0.0004 7 8 4.2658 -2.3718 0.0008 8 6 5.6927 -2.2948 0.0007 9 6 6.2796 -3.7078 0.0006 10 6 7.8074 -3.6255 -0.0001 11 6 8.3943 -5.0385 0.0004 12 6 9.8991 -4.9574 0.0003 13 8 10.4481 -3.8759 0.0003 14 7 10.6348 -6.0866 0.0002 15 6 12.0815 -6.3785 0.0005 16 6 11.7030 -7.7266 0.6403 17 8 11.6876 -7.7011 2.0691 18 6 12.4672 -8.8991 0.0818 19 1 13.2012 -8.7447 -0.6953 20 6 12.2294 -10.1693 0.5627 21 7 11.3359 -10.3574 1.5093 22 14 13.1762 -11.6228 -0.1302 23 1 12.4359 -12.1905 -1.2856 24 1 14.5190 -11.1718 -0.5760 25 1 13.3264 -12.6617 0.9202 26 6 10.3173 -7.5279 0.0006 27 6 2.1970 -1.1965 0.0005 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6565 2.1325 -0.0004 32 1 4.1175 2.1383 -0.0010 33 1 5.3552 0.0104 0.0102 34 1 6.0279 -1.7619 0.8905 35 1 6.0279 -1.7625 -0.8894 36 1 5.9444 -4.2404 -0.8895 37 1 5.9445 -4.2406 0.8906 38 1 8.1430 -3.0928 0.8898 39 1 8.1422 -3.0929 -0.8903 40 1 8.0588 -5.5715 -0.8892 41 1 8.0595 -5.5707 0.8908 42 1 12.6607 -5.7282 0.6560 43 1 12.5130 -6.4710 -0.9962 44 1 11.4218 -8.5379 2.4744 45 1 11.1684 -11.2510 1.8474 46 1 10.2281 -7.9583 -0.9969 47 1 9.4886 -7.7950 0.6561 48 1 1.6571 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186802311.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:39 Heat of formation + Delta-G solvation = -101.637409 kcal Electronic energy + Delta-G solvation = -26950.020565 eV Core-core repulsion = 22970.011324 eV Total energy + Delta-G solvation = -3980.009241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.22774 -41.09629 -39.24176 -38.72054 -35.94262 -35.76584 -34.12846 -33.41766 -31.97046 -30.81829 -29.64980 -27.89571 -27.23543 -26.99091 -25.14453 -23.54065 -22.51018 -21.72564 -21.57681 -19.87231 -19.21245 -18.71075 -17.84927 -17.47759 -17.30144 -17.04919 -16.86768 -16.71100 -16.45653 -15.92134 -15.58328 -15.21361 -14.90602 -14.61501 -14.54944 -14.31291 -14.18443 -14.03932 -13.82275 -13.40533 -13.35355 -13.24573 -12.98032 -12.90106 -12.74986 -12.71082 -12.60539 -12.37626 -12.25925 -12.22997 -12.17571 -11.89550 -11.68688 -11.50272 -11.37888 -10.92628 -10.62902 -10.23402 -9.75303 -9.56042 -9.16052 -8.26594 -6.43353 0.34732 0.47697 1.46548 1.50481 1.59085 1.66020 1.92145 2.21221 2.41149 2.78467 2.96285 3.47243 3.73174 3.80661 3.86461 3.88808 3.93994 4.15761 4.17302 4.20604 4.22175 4.26273 4.40463 4.42731 4.47597 4.54858 4.57013 4.60033 4.64617 4.71668 4.83126 4.83897 4.85424 4.90825 4.92479 5.00512 5.03657 5.18785 5.23743 5.25745 5.31679 5.37124 5.49011 5.64655 5.73235 5.86833 5.93526 6.44194 6.61933 6.88203 7.16050 7.30608 7.47467 8.79299 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.029269 B = 0.001559 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.422858 B =17958.539594 C =18560.069081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.054 4.054 3 C -0.168 4.168 4 C -0.082 4.082 5 C -0.230 4.230 6 C 0.114 3.886 7 O -0.331 6.331 8 C 0.060 3.940 9 C -0.108 4.108 10 C -0.090 4.090 11 C -0.124 4.124 12 C 0.518 3.482 13 O -0.600 6.600 14 N -0.637 5.637 15 C 0.108 3.892 16 C 0.216 3.784 17 O -0.588 6.588 18 C -0.557 4.557 19 H 0.071 0.929 20 C 0.034 3.966 21 N -0.916 5.916 22 Si 0.968 3.032 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.284 1.284 26 C 0.093 3.907 27 C -0.174 4.174 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.133 0.867 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.055 0.945 43 H 0.101 0.899 44 H 0.388 0.612 45 H 0.276 0.724 46 H 0.094 0.906 47 H 0.071 0.929 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.019 15.864 -4.184 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.054 4.054 3 C -0.186 4.186 4 C -0.100 4.100 5 C -0.248 4.248 6 C 0.069 3.931 7 O -0.245 6.245 8 C -0.015 4.015 9 C -0.146 4.146 10 C -0.128 4.128 11 C -0.163 4.163 12 C 0.310 3.690 13 O -0.483 6.483 14 N -0.370 5.370 15 C -0.015 4.015 16 C 0.175 3.825 17 O -0.400 6.400 18 C -0.595 4.595 19 H 0.089 0.911 20 C -0.166 4.166 21 N -0.557 5.557 22 Si 0.793 3.207 23 H -0.196 1.196 24 H -0.197 1.197 25 H -0.209 1.209 26 C -0.029 4.029 27 C -0.193 4.193 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.151 0.849 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.130 0.870 41 H 0.120 0.880 42 H 0.074 0.926 43 H 0.119 0.881 44 H 0.243 0.757 45 H 0.086 0.914 46 H 0.112 0.888 47 H 0.089 0.911 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.822 16.857 -4.156 26.351 hybrid contribution 0.875 -1.337 0.003 1.598 sum -18.947 15.520 -4.154 24.842 Atomic orbital electron populations 1.20871 0.88813 1.03930 1.03400 1.20077 0.97557 0.91900 0.95890 1.21296 0.94256 0.98428 1.04570 1.21271 0.94712 0.97850 0.96155 1.21488 1.00984 0.92527 1.09839 1.19294 0.92330 0.85010 0.96508 1.86011 1.21084 1.28739 1.88653 1.22885 0.77147 0.99330 1.02129 1.21438 0.93540 0.95144 1.04440 1.21103 0.93573 0.94960 1.03141 1.21575 0.88517 1.00357 1.05883 1.21137 0.91044 0.81833 0.74948 1.90605 1.75012 1.28692 1.54038 1.50257 1.08970 1.06806 1.70956 1.23437 0.82470 0.95169 1.00390 1.20139 0.91446 0.91390 0.79497 1.86045 1.91694 1.41912 1.20379 1.21742 1.23743 0.91952 1.22049 0.91091 1.25724 0.95020 1.01365 0.94530 1.69376 1.33713 1.24220 1.28343 0.85400 0.78978 0.78219 0.78090 1.19610 1.19674 1.20922 1.24093 1.01342 0.76190 1.01323 1.20539 0.90849 0.99552 1.08334 0.90003 0.89869 0.90892 0.83691 0.83723 0.84874 0.91528 0.91245 0.89865 0.90320 0.92013 0.91390 0.86985 0.88021 0.92614 0.88134 0.75664 0.91406 0.88807 0.91063 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 71.24 0.71 -0.36 16 2 C -0.05 -0.85 5.88 -19.88 -0.12 -0.96 16 3 C -0.17 -2.43 9.70 22.28 0.22 -2.21 16 4 C -0.08 -1.29 10.04 22.25 0.22 -1.07 16 5 C -0.23 -4.41 9.04 22.37 0.20 -4.21 16 6 C 0.11 2.49 6.69 22.51 0.15 2.64 16 7 O -0.33 -7.62 10.14 -92.46 -0.94 -8.56 16 8 C 0.06 1.17 4.74 71.98 0.34 1.51 16 9 C -0.11 -2.08 5.58 30.60 0.17 -1.91 16 10 C -0.09 -2.13 4.50 30.60 0.14 -2.00 16 11 C -0.12 -3.38 5.45 29.85 0.16 -3.22 16 12 C 0.52 19.97 8.06 87.66 0.71 20.68 16 13 O -0.60 -26.87 16.71 -3.04 -0.05 -26.92 16 14 N -0.64 -26.08 3.61 -840.31 -3.03 -29.11 16 15 C 0.11 4.70 8.23 86.48 0.71 5.41 16 16 C 0.22 10.22 1.44 -10.89 -0.02 10.20 16 17 O -0.59 -30.31 13.48 -148.98 -2.01 -32.32 16 18 C -0.56 -27.35 8.62 25.60 0.22 -27.13 16 19 H 0.07 3.40 7.81 -2.91 -0.02 3.37 16 20 C 0.03 1.65 5.40 84.66 0.46 2.11 16 21 N -0.92 -45.21 11.09 21.45 0.24 -44.97 16 22 Si 0.97 38.71 29.54 68.60 2.03 40.74 16 23 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 24 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 25 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 26 C 0.09 3.79 8.00 86.47 0.69 4.49 16 27 C -0.17 -3.40 9.64 22.37 0.22 -3.18 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.55 8.09 -2.39 -0.02 0.53 16 30 H 0.07 0.63 8.08 -2.39 -0.02 0.61 16 31 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 32 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 33 H 0.13 2.28 6.30 -2.91 -0.02 2.26 16 34 H 0.07 1.24 7.65 -2.39 -0.02 1.22 16 35 H 0.07 1.25 7.67 -2.39 -0.02 1.23 16 36 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 1.61 8.10 -2.38 -0.02 1.59 16 39 H 0.07 1.67 8.10 -2.39 -0.02 1.65 16 40 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.10 3.98 8.09 -2.38 -0.02 3.96 16 44 H 0.39 20.18 6.46 -74.06 -0.48 19.70 16 45 H 0.28 12.91 8.31 -92.71 -0.77 12.14 16 46 H 0.09 3.58 8.09 -2.39 -0.02 3.56 16 47 H 0.07 2.84 8.14 -2.39 -0.02 2.83 16 48 H 0.13 2.35 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -61.64 400.82 1.90 -59.74 By element: Atomic # 1 Polarization: 40.14 SS G_CDS: 0.47 Total: 40.61 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 5.19 Total: 0.78 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -2.79 Total: -74.08 kcal Atomic # 8 Polarization: -64.79 SS G_CDS: -3.00 Total: -67.79 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -61.64 1.90 -59.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186802311.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.895 kcal (2) G-P(sol) polarization free energy of solvation -61.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds