Wall clock time and date at job start Tue Mar 31 2020 18:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47459 * 2 1 4 4 C 1.50703 * 109.46749 * 119.99937 * 2 1 3 5 5 C 1.38270 * 119.94383 * 119.99874 * 4 2 1 6 6 C 1.38141 * 120.05603 * 179.97438 * 5 4 2 7 7 C 1.38735 * 119.94186 * 0.02562 * 6 5 4 8 8 O 1.35901 * 120.05139 * 180.02562 * 7 6 5 9 9 C 1.42904 * 116.99622 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47198 * 180.02562 * 9 8 7 11 11 C 1.50691 * 109.47382 * 179.97438 * 10 9 8 12 12 O 1.21278 * 120.00028 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00407 * 179.97438 * 11 10 9 14 14 C 1.47575 * 134.49576 * 180.02562 * 13 11 10 15 15 C 1.53952 * 86.11883 * 155.35932 * 14 13 11 16 16 O 1.42896 * 113.73968 * 269.15538 * 15 14 13 17 17 C 1.50696 * 113.74096 * 137.94737 * 15 14 13 18 18 H 1.07999 * 120.00319 * 0.02562 * 17 15 14 19 19 C 1.37885 * 119.99717 * 179.97438 * 17 15 14 20 20 N 1.31516 * 119.99913 * 180.02562 * 19 17 15 21 21 Si 1.86798 * 119.99766 * 0.02562 * 19 17 15 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 C 1.47581 * 134.48697 * 359.97438 * 13 11 10 26 26 C 1.38732 * 119.89104 * 0.27175 * 7 6 5 27 27 C 1.38143 * 119.94179 * 359.47783 * 26 7 6 28 28 H 1.08996 * 109.47304 * 300.00871 * 1 2 3 29 29 H 1.09007 * 109.46742 * 60.00005 * 1 2 3 30 30 H 1.08993 * 109.47638 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46815 * 239.99702 * 2 1 3 32 32 H 1.09006 * 109.47030 * 59.99835 * 3 2 1 33 33 H 1.08999 * 109.47491 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47140 * 299.99751 * 3 2 1 35 35 H 1.08002 * 119.96865 * 359.97438 * 5 4 2 36 36 H 1.08003 * 120.02763 * 179.97438 * 6 5 4 37 37 H 1.08998 * 109.47254 * 60.00073 * 9 8 7 38 38 H 1.09001 * 109.47339 * 300.00170 * 9 8 7 39 39 H 1.09006 * 109.46821 * 59.99687 * 10 9 8 40 40 H 1.09001 * 109.47010 * 300.00243 * 10 9 8 41 41 H 1.08992 * 113.77450 * 41.05752 * 14 13 11 42 42 H 1.09008 * 113.87093 * 269.66964 * 14 13 11 43 43 H 0.96697 * 113.99744 * 178.07719 * 16 15 14 44 44 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 45 45 H 1.09002 * 113.76822 * 90.34347 * 25 13 11 46 46 H 1.08998 * 113.77440 * 318.94601 * 25 13 11 47 47 H 1.08000 * 120.02964 * 179.71872 * 26 7 6 48 48 H 1.07998 * 119.97052 * 180.23201 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8271 -1.8346 1.1024 6 6 3.2892 -2.4873 2.2288 7 6 2.9547 -2.0142 3.4893 8 8 3.4085 -2.6543 4.5990 9 6 3.0249 -2.1109 5.8638 10 6 3.6263 -2.9585 6.9866 11 6 3.2224 -2.3852 8.3203 12 8 2.5219 -1.3963 8.3682 13 7 3.6386 -2.9720 9.4601 14 6 3.4440 -2.6954 10.8966 15 6 3.7203 -4.1940 11.1155 16 8 2.5442 -5.0053 11.0921 17 6 4.6085 -4.4807 12.2986 18 1 4.9856 -3.6672 12.9006 19 6 4.9390 -5.7819 12.6133 20 7 5.7137 -6.0322 13.6462 21 14 4.2862 -7.1891 11.5725 22 1 2.9854 -7.6490 12.1217 23 1 4.0971 -6.7247 10.1747 24 1 5.2574 -8.3123 11.5938 25 6 4.4712 -4.1497 9.7727 26 6 2.1520 -0.8897 3.6152 27 6 1.6967 -0.2376 2.4857 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8901 35 1 3.0868 -2.2026 0.1208 36 1 3.9096 -3.3656 2.1281 37 1 1.9381 -2.1158 5.9467 38 1 3.3909 -1.0875 5.9457 39 1 4.7132 -2.9533 6.9034 40 1 3.2607 -3.9821 6.9049 41 1 2.4283 -2.3941 11.1524 42 1 4.2027 -2.0414 11.3266 43 1 2.7163 -5.9507 11.1999 44 1 5.9458 -6.9476 13.8677 45 1 5.5331 -3.9235 9.8704 46 1 4.2754 -5.0090 9.1314 47 1 1.8864 -0.5222 4.5955 48 1 1.0749 0.6400 2.5832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186841156.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:06 Heat of formation + Delta-G solvation = -62.807612 kcal Electronic energy + Delta-G solvation = -27636.743736 eV Core-core repulsion = 23658.418281 eV Total energy + Delta-G solvation = -3978.325455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.46362 -39.85885 -38.46167 -37.69403 -35.10059 -34.56186 -32.60044 -32.07265 -31.19150 -29.29481 -28.62943 -27.47627 -26.03810 -25.44092 -24.12537 -23.51031 -21.93293 -20.30095 -20.21948 -18.83735 -18.27076 -17.47973 -16.74636 -16.46048 -16.38382 -16.15220 -15.67565 -15.22852 -15.02687 -14.58214 -14.56530 -13.95161 -13.85782 -13.70564 -13.59075 -13.53764 -13.31942 -12.89933 -12.87661 -12.65219 -12.61016 -12.33318 -12.22440 -11.88024 -11.85376 -11.44052 -11.36945 -11.29851 -11.08778 -11.02106 -10.77895 -10.74054 -10.65496 -10.19203 -9.86418 -9.39007 -9.19548 -9.07700 -8.76865 -8.23666 -8.14396 -6.47176 -4.53707 1.14935 1.22689 2.76963 2.91567 2.95492 2.96738 3.11021 3.53099 3.54846 3.97924 4.37733 4.46025 4.56878 4.65547 4.70628 4.79412 4.86644 4.88625 4.92025 5.07026 5.09819 5.12571 5.21229 5.27939 5.33268 5.43528 5.48923 5.52651 5.54542 5.62663 5.66738 5.72778 5.81677 5.89116 5.89327 5.93780 6.00341 6.11798 6.17373 6.21142 6.27535 6.34761 6.42922 6.53279 6.59254 7.14033 7.27130 7.96670 8.16589 8.41707 8.46619 8.56610 9.10007 10.64931 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028823 B = 0.001900 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.216505 B =14734.284875 C =15172.604304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 C -0.145 4.145 4 C -0.120 4.120 5 C -0.080 4.080 6 C -0.152 4.152 7 C 0.132 3.868 8 O -0.318 6.318 9 C 0.078 3.922 10 C -0.135 4.135 11 C 0.536 3.464 12 O -0.562 6.562 13 N -0.632 5.632 14 C 0.127 3.873 15 C 0.195 3.805 16 O -0.553 6.553 17 C -0.537 4.537 18 H 0.092 0.908 19 C 0.080 3.920 20 N -0.874 5.874 21 Si 0.859 3.141 22 H -0.266 1.266 23 H -0.257 1.257 24 H -0.283 1.283 25 C 0.061 3.939 26 C -0.205 4.205 27 C -0.074 4.074 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.352 0.648 44 H 0.271 0.729 45 H 0.097 0.903 46 H 0.070 0.930 47 H 0.131 0.869 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.869 7.762 -25.009 26.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 C -0.202 4.202 4 C -0.120 4.120 5 C -0.098 4.098 6 C -0.170 4.170 7 C 0.086 3.914 8 O -0.231 6.231 9 C 0.003 3.997 10 C -0.175 4.175 11 C 0.325 3.675 12 O -0.443 6.443 13 N -0.365 5.365 14 C 0.006 3.994 15 C 0.154 3.846 16 O -0.364 6.364 17 C -0.575 4.575 18 H 0.110 0.890 19 C -0.125 4.125 20 N -0.510 5.510 21 Si 0.688 3.312 22 H -0.193 1.193 23 H -0.183 1.183 24 H -0.209 1.209 25 C -0.061 4.061 26 C -0.223 4.223 27 C -0.092 4.092 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.095 0.905 42 H 0.114 0.886 43 H 0.204 0.796 44 H 0.082 0.918 45 H 0.115 0.885 46 H 0.088 0.912 47 H 0.149 0.851 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.354 8.619 -25.082 27.057 hybrid contribution 0.035 -1.353 -0.207 1.369 sum -5.319 7.266 -25.290 26.845 Atomic orbital electron populations 1.21871 0.94509 1.02015 1.01830 1.20043 0.95799 0.95899 0.95256 1.21871 1.01260 0.95255 1.01827 1.19743 1.00539 0.97128 0.94608 1.20830 0.96552 0.94637 0.97807 1.20421 1.04603 1.02540 0.89481 1.19012 0.93779 0.91699 0.86885 1.85985 1.70792 1.53262 1.13104 1.22443 1.00204 0.97336 0.79721 1.21385 1.03594 1.01536 0.90969 1.19745 0.80361 0.82962 0.84389 1.90664 1.39667 1.26543 1.87388 1.50083 1.50301 1.30438 1.05705 1.23324 1.01949 0.97273 0.76860 1.20545 0.83490 0.88538 0.92026 1.86478 1.34000 1.20084 1.95847 1.21217 1.29666 0.94816 1.11802 0.89018 1.25014 0.94183 0.98683 0.94658 1.69854 1.34298 1.21022 1.25815 0.87327 0.79412 0.83025 0.81425 1.19261 1.18269 1.20950 1.24679 0.96816 0.86171 0.98481 1.21368 1.02883 0.97892 1.00188 1.20755 0.98254 0.98866 0.91319 0.92483 0.92512 0.92528 0.90634 0.92479 0.92531 0.92519 0.85604 0.85239 0.91050 0.91068 0.87997 0.88045 0.90505 0.88604 0.79590 0.91834 0.88465 0.91162 0.85100 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.01 37.16 0.33 -0.59 16 2 C -0.05 -0.36 3.09 -91.77 -0.28 -0.64 16 3 C -0.14 -0.92 9.01 37.15 0.33 -0.58 16 4 C -0.12 -1.08 4.78 -104.60 -0.50 -1.58 16 5 C -0.08 -0.73 9.66 -39.61 -0.38 -1.12 16 6 C -0.15 -1.62 9.99 -39.43 -0.39 -2.02 16 7 C 0.13 1.63 6.69 -39.22 -0.26 1.36 16 8 O -0.32 -4.24 10.14 -19.43 -0.20 -4.44 16 9 C 0.08 1.05 4.03 37.16 0.15 1.20 16 10 C -0.13 -1.90 5.82 -27.89 -0.16 -2.06 16 11 C 0.54 9.73 8.06 -10.99 -0.09 9.64 16 12 O -0.56 -11.63 16.71 5.56 0.09 -11.54 16 13 N -0.63 -12.09 3.61 -178.33 -0.64 -12.74 16 14 C 0.13 2.57 8.23 -2.97 -0.02 2.54 16 15 C 0.19 4.29 1.06 -90.86 -0.10 4.20 16 16 O -0.55 -12.67 13.32 -35.23 -0.47 -13.14 16 17 C -0.54 -13.48 9.20 -34.44 -0.32 -13.80 16 18 H 0.09 2.47 8.06 -52.49 -0.42 2.04 16 19 C 0.08 2.05 5.47 -17.82 -0.10 1.96 16 20 N -0.87 -23.98 13.96 55.43 0.77 -23.21 16 21 Si 0.86 18.39 24.34 -169.99 -4.14 14.25 16 22 H -0.27 -5.60 7.06 56.52 0.40 -5.20 16 23 H -0.26 -5.09 5.28 56.52 0.30 -4.79 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 C 0.06 1.17 7.20 -2.99 -0.02 1.15 16 26 C -0.20 -2.35 9.04 -39.43 -0.36 -2.70 16 27 C -0.07 -0.73 8.70 -39.61 -0.34 -1.07 16 28 H 0.06 0.37 7.38 -51.93 -0.38 -0.01 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.46 7.87 -51.93 -0.41 0.05 16 32 H 0.06 0.37 7.39 -51.93 -0.38 -0.01 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.13 0.85 7.94 -52.49 -0.42 0.44 16 36 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 37 H 0.07 0.97 7.61 -51.93 -0.40 0.58 16 38 H 0.07 0.95 7.63 -51.93 -0.40 0.55 16 39 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 41 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 42 H 0.10 1.79 8.09 -51.92 -0.42 1.37 16 43 H 0.35 7.67 3.31 45.56 0.15 7.82 16 44 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.10 1.74 8.09 -51.93 -0.42 1.32 16 46 H 0.07 1.26 6.98 -51.93 -0.36 0.90 16 47 H 0.13 1.47 6.30 -52.49 -0.33 1.14 16 48 H 0.12 1.01 7.09 -52.49 -0.37 0.63 16 LS Contribution 387.66 15.07 5.84 5.84 Total: -1.00 -29.48 387.66 -8.44 -37.92 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -7.18 Total: 11.16 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -2.51 Total: -4.12 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.13 Total: -35.94 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.57 Total: -29.11 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -4.14 Total: 14.25 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.48 -8.44 -37.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186841156.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.890 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds