Wall clock time and date at job start Tue Mar 31 2020 18:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47459 * 2 1 4 4 C 1.50703 * 109.46749 * 119.99937 * 2 1 3 5 5 C 1.38270 * 119.94383 * 119.99874 * 4 2 1 6 6 C 1.38141 * 120.05603 * 179.97438 * 5 4 2 7 7 C 1.38735 * 119.94186 * 0.02562 * 6 5 4 8 8 O 1.35901 * 120.05139 * 180.02562 * 7 6 5 9 9 C 1.42904 * 116.99622 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47198 * 180.02562 * 9 8 7 11 11 C 1.50691 * 109.47382 * 179.97438 * 10 9 8 12 12 O 1.21278 * 120.00028 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00407 * 179.97438 * 11 10 9 14 14 C 1.47575 * 134.49576 * 180.02562 * 13 11 10 15 15 C 1.53952 * 86.11883 * 155.35932 * 14 13 11 16 16 O 1.42896 * 113.73968 * 269.15538 * 15 14 13 17 17 C 1.50696 * 113.74096 * 137.94737 * 15 14 13 18 18 H 1.07999 * 120.00319 * 0.02562 * 17 15 14 19 19 C 1.37885 * 119.99717 * 179.97438 * 17 15 14 20 20 N 1.31516 * 119.99913 * 180.02562 * 19 17 15 21 21 Si 1.86798 * 119.99766 * 0.02562 * 19 17 15 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 C 1.47581 * 134.48697 * 359.97438 * 13 11 10 26 26 C 1.38732 * 119.89104 * 0.27175 * 7 6 5 27 27 C 1.38143 * 119.94179 * 359.47783 * 26 7 6 28 28 H 1.08996 * 109.47304 * 300.00871 * 1 2 3 29 29 H 1.09007 * 109.46742 * 60.00005 * 1 2 3 30 30 H 1.08993 * 109.47638 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46815 * 239.99702 * 2 1 3 32 32 H 1.09006 * 109.47030 * 59.99835 * 3 2 1 33 33 H 1.08999 * 109.47491 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47140 * 299.99751 * 3 2 1 35 35 H 1.08002 * 119.96865 * 359.97438 * 5 4 2 36 36 H 1.08003 * 120.02763 * 179.97438 * 6 5 4 37 37 H 1.08998 * 109.47254 * 60.00073 * 9 8 7 38 38 H 1.09001 * 109.47339 * 300.00170 * 9 8 7 39 39 H 1.09006 * 109.46821 * 59.99687 * 10 9 8 40 40 H 1.09001 * 109.47010 * 300.00243 * 10 9 8 41 41 H 1.08992 * 113.77450 * 41.05752 * 14 13 11 42 42 H 1.09008 * 113.87093 * 269.66964 * 14 13 11 43 43 H 0.96697 * 113.99744 * 178.07719 * 16 15 14 44 44 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 45 45 H 1.09002 * 113.76822 * 90.34347 * 25 13 11 46 46 H 1.08998 * 113.77440 * 318.94601 * 25 13 11 47 47 H 1.08000 * 120.02964 * 179.71872 * 26 7 6 48 48 H 1.07998 * 119.97052 * 180.23201 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8271 -1.8346 1.1024 6 6 3.2892 -2.4873 2.2288 7 6 2.9547 -2.0142 3.4893 8 8 3.4085 -2.6543 4.5990 9 6 3.0249 -2.1109 5.8638 10 6 3.6263 -2.9585 6.9866 11 6 3.2224 -2.3852 8.3203 12 8 2.5219 -1.3963 8.3682 13 7 3.6386 -2.9720 9.4601 14 6 3.4440 -2.6954 10.8966 15 6 3.7203 -4.1940 11.1155 16 8 2.5442 -5.0053 11.0921 17 6 4.6085 -4.4807 12.2986 18 1 4.9856 -3.6672 12.9006 19 6 4.9390 -5.7819 12.6133 20 7 5.7137 -6.0322 13.6462 21 14 4.2862 -7.1891 11.5725 22 1 2.9854 -7.6490 12.1217 23 1 4.0971 -6.7247 10.1747 24 1 5.2574 -8.3123 11.5938 25 6 4.4712 -4.1497 9.7727 26 6 2.1520 -0.8897 3.6152 27 6 1.6967 -0.2376 2.4857 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8901 35 1 3.0868 -2.2026 0.1208 36 1 3.9096 -3.3656 2.1281 37 1 1.9381 -2.1158 5.9467 38 1 3.3909 -1.0875 5.9457 39 1 4.7132 -2.9533 6.9034 40 1 3.2607 -3.9821 6.9049 41 1 2.4283 -2.3941 11.1524 42 1 4.2027 -2.0414 11.3266 43 1 2.7163 -5.9507 11.1999 44 1 5.9458 -6.9476 13.8677 45 1 5.5331 -3.9235 9.8704 46 1 4.2754 -5.0090 9.1314 47 1 1.8864 -0.5222 4.5955 48 1 1.0749 0.6400 2.5832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186841156.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:05 Heat of formation + Delta-G solvation = -81.206173 kcal Electronic energy + Delta-G solvation = -27637.541557 eV Core-core repulsion = 23658.418281 eV Total energy + Delta-G solvation = -3979.123276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.55640 -41.15524 -39.59119 -38.94752 -36.27833 -35.75975 -34.54861 -33.21249 -31.97741 -30.67650 -29.63907 -27.95242 -27.64677 -27.08998 -25.27331 -24.24091 -22.85891 -21.83586 -20.94328 -20.21315 -19.51293 -19.16904 -18.18440 -17.99943 -17.53569 -17.11010 -16.70211 -16.42442 -16.32248 -15.59454 -15.43203 -15.29632 -15.17040 -15.00713 -14.52233 -14.46765 -14.35668 -14.23914 -14.16120 -13.82987 -13.65521 -13.60671 -13.11720 -12.96009 -12.82397 -12.72310 -12.66966 -12.43316 -12.07539 -12.05393 -11.94777 -11.67944 -11.63472 -11.49013 -11.44739 -11.12387 -10.89580 -10.50868 -9.96766 -9.72120 -9.05066 -8.42451 -6.55048 0.37652 0.43609 1.25498 1.28624 1.41505 1.48523 1.57640 2.18020 2.29021 2.77147 2.77448 3.21678 3.47848 3.69111 3.78638 3.82112 3.84227 3.87793 3.94077 4.15763 4.23777 4.32556 4.35933 4.41037 4.41725 4.46054 4.57589 4.61523 4.62870 4.64962 4.68355 4.77065 4.82774 4.82798 4.92936 4.97283 5.02094 5.09529 5.13197 5.28578 5.34106 5.37132 5.41198 5.45345 5.73151 5.83558 6.03462 6.37120 6.52805 6.63551 6.72130 6.98166 7.13320 8.72820 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028823 B = 0.001900 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.216505 B =14734.284875 C =15172.604304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 C -0.144 4.144 4 C -0.117 4.117 5 C -0.081 4.081 6 C -0.158 4.158 7 C 0.104 3.896 8 O -0.325 6.325 9 C 0.086 3.914 10 C -0.125 4.125 11 C 0.534 3.466 12 O -0.591 6.591 13 N -0.634 5.634 14 C 0.124 3.876 15 C 0.182 3.818 16 O -0.561 6.561 17 C -0.544 4.544 18 H 0.056 0.944 19 C 0.027 3.973 20 N -0.923 5.923 21 Si 0.918 3.082 22 H -0.259 1.259 23 H -0.226 1.226 24 H -0.283 1.283 25 C 0.076 3.924 26 C -0.218 4.218 27 C -0.081 4.081 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.153 0.847 36 H 0.140 0.860 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.070 0.930 42 H 0.103 0.897 43 H 0.356 0.644 44 H 0.273 0.727 45 H 0.109 0.891 46 H 0.091 0.909 47 H 0.125 0.875 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.311 7.143 -28.554 29.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 C -0.201 4.201 4 C -0.118 4.118 5 C -0.098 4.098 6 C -0.177 4.177 7 C 0.059 3.941 8 O -0.239 6.239 9 C 0.011 3.989 10 C -0.164 4.164 11 C 0.325 3.675 12 O -0.474 6.474 13 N -0.367 5.367 14 C 0.002 3.998 15 C 0.142 3.858 16 O -0.373 6.373 17 C -0.582 4.582 18 H 0.075 0.925 19 C -0.174 4.174 20 N -0.561 5.561 21 Si 0.743 3.257 22 H -0.185 1.185 23 H -0.150 1.150 24 H -0.209 1.209 25 C -0.047 4.047 26 C -0.237 4.237 27 C -0.099 4.099 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.171 0.829 36 H 0.157 0.843 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.141 0.859 40 H 0.134 0.866 41 H 0.088 0.912 42 H 0.121 0.879 43 H 0.209 0.791 44 H 0.083 0.917 45 H 0.127 0.873 46 H 0.109 0.891 47 H 0.143 0.857 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.801 8.016 -28.654 30.315 hybrid contribution 0.143 -1.032 0.904 1.379 sum -5.658 6.984 -27.751 29.170 Atomic orbital electron populations 1.21867 0.94093 1.01871 1.02333 1.20104 0.96087 0.96079 0.94598 1.21866 1.00987 0.94963 1.02331 1.20072 0.99656 0.96925 0.95105 1.21179 0.95821 0.94288 0.98538 1.20671 1.04733 1.03018 0.89275 1.19288 0.95135 0.92576 0.87089 1.85938 1.71220 1.53602 1.13128 1.22261 0.99637 0.97025 0.80028 1.21331 1.04852 1.01814 0.88414 1.20412 0.79384 0.82430 0.85236 1.90653 1.40887 1.27965 1.87850 1.50057 1.50540 1.30650 1.05451 1.23285 1.01887 0.96423 0.78226 1.20609 0.83243 0.89445 0.92534 1.86474 1.34362 1.20549 1.95888 1.21336 1.29968 0.94138 1.12710 0.92550 1.25840 0.94230 1.01512 0.95814 1.69999 1.36257 1.21785 1.28030 0.86342 0.78828 0.79255 0.81267 1.18516 1.15005 1.20918 1.24508 0.96955 0.86815 0.96386 1.21436 1.03427 0.98222 1.00568 1.20961 0.98347 0.99219 0.91344 0.92912 0.91144 0.92989 0.89321 0.92899 0.92950 0.91158 0.82949 0.84258 0.91848 0.91521 0.85933 0.86602 0.91177 0.87861 0.79114 0.91729 0.87324 0.89080 0.85730 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.01 71.98 0.65 -0.88 16 2 C -0.05 -0.57 3.09 -11.54 -0.04 -0.60 16 3 C -0.14 -1.51 9.01 71.98 0.65 -0.86 16 4 C -0.12 -1.89 4.78 -19.85 -0.09 -1.99 16 5 C -0.08 -1.29 9.66 22.25 0.22 -1.07 16 6 C -0.16 -3.14 9.99 22.37 0.22 -2.92 16 7 C 0.10 2.49 6.69 22.51 0.15 2.64 16 8 O -0.32 -8.32 10.14 -92.44 -0.94 -9.25 16 9 C 0.09 2.23 4.03 71.98 0.29 2.52 16 10 C -0.12 -3.23 5.82 29.85 0.17 -3.06 16 11 C 0.53 18.60 8.06 87.65 0.71 19.30 16 12 O -0.59 -24.19 16.71 -3.02 -0.05 -24.24 16 13 N -0.63 -23.22 3.61 -840.32 -3.03 -26.25 16 14 C 0.12 4.96 8.23 86.48 0.71 5.68 16 15 C 0.18 7.86 1.06 -10.89 -0.01 7.84 16 16 O -0.56 -24.71 13.32 -148.98 -1.98 -26.69 16 17 C -0.54 -27.64 9.20 25.60 0.24 -27.41 16 18 H 0.06 3.17 8.06 -2.91 -0.02 3.15 16 19 C 0.03 1.40 5.47 84.66 0.46 1.86 16 20 N -0.92 -51.77 13.96 21.45 0.30 -51.47 16 21 Si 0.92 36.77 24.34 68.60 1.67 38.44 16 22 H -0.26 -10.07 7.06 99.48 0.70 -9.37 16 23 H -0.23 -7.86 5.28 99.48 0.53 -7.33 16 24 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 25 C 0.08 2.69 7.20 86.47 0.62 3.31 16 26 C -0.22 -4.94 9.04 22.37 0.20 -4.73 16 27 C -0.08 -1.51 8.70 22.25 0.19 -1.32 16 28 H 0.05 0.60 7.38 -2.39 -0.02 0.58 16 29 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.09 0.80 7.87 -2.39 -0.02 0.78 16 32 H 0.05 0.59 7.39 -2.38 -0.02 0.58 16 33 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.15 1.56 7.94 -2.91 -0.02 1.54 16 36 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 37 H 0.06 1.72 7.61 -2.39 -0.02 1.70 16 38 H 0.07 1.76 7.63 -2.39 -0.02 1.74 16 39 H 0.12 2.71 8.14 -2.38 -0.02 2.69 16 40 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 42 H 0.10 3.91 8.09 -2.38 -0.02 3.89 16 43 H 0.36 14.60 3.31 -74.06 -0.24 14.36 16 44 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 45 H 0.11 3.63 8.09 -2.39 -0.02 3.61 16 46 H 0.09 2.88 6.98 -2.39 -0.02 2.86 16 47 H 0.12 2.87 6.30 -2.91 -0.02 2.85 16 48 H 0.13 2.08 7.09 -2.91 -0.02 2.06 16 Total: -1.00 -64.25 387.66 1.84 -62.42 By element: Atomic # 1 Polarization: 38.21 SS G_CDS: 0.53 Total: 38.74 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 5.34 Total: -1.69 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -2.73 Total: -77.72 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: -2.97 Total: -60.19 kcal Atomic # 14 Polarization: 36.77 SS G_CDS: 1.67 Total: 38.44 kcal Total: -64.25 1.84 -62.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186841156.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.790 kcal (2) G-P(sol) polarization free energy of solvation -64.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds