Wall clock time and date at job start Tue Mar 31 2020 18:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47072 * 2 1 4 4 C 1.52999 * 109.87598 * 183.17802 * 3 2 1 5 5 O 1.42903 * 109.46898 * 295.95948 * 4 3 2 6 6 C 1.54374 * 109.84377 * 61.99992 * 3 2 1 7 7 C 1.55157 * 102.91928 * 262.72935 * 6 3 2 8 8 C 1.54913 * 101.61983 * 324.54944 * 7 6 3 9 9 N 1.47021 * 109.88101 * 304.19557 * 3 2 1 10 10 C 1.34779 * 125.64724 * 300.43275 * 9 3 2 11 11 O 1.21283 * 119.99725 * 0.02926 * 10 9 3 12 12 C 1.50695 * 119.99970 * 180.02562 * 10 9 3 13 13 C 1.50698 * 109.47088 * 180.02562 * 12 10 9 14 14 C 1.38304 * 119.93360 * 269.72522 * 13 12 10 15 15 C 1.38098 * 120.07111 * 179.72381 * 14 13 12 16 16 C 1.38888 * 119.92791 * 0.54984 * 15 14 13 17 17 O 1.35749 * 120.06732 * 179.74730 * 16 15 14 18 18 C 1.34828 * 116.99974 * 173.95875 * 17 16 15 19 19 H 1.07994 * 119.99855 * 5.09351 * 18 17 16 20 20 C 1.38659 * 120.00070 * 185.09711 * 18 17 16 21 21 N 1.31558 * 119.99748 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00114 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47198 * 89.99698 * 22 20 18 24 24 H 1.48497 * 109.47094 * 210.00004 * 22 20 18 25 25 H 1.48502 * 109.47019 * 329.99538 * 22 20 18 26 26 C 1.38879 * 119.86195 * 359.72714 * 16 15 14 27 27 C 1.38094 * 119.93218 * 0.02562 * 26 16 15 28 28 H 1.08997 * 109.47364 * 303.16685 * 1 2 3 29 29 H 1.09003 * 109.47249 * 63.17243 * 1 2 3 30 30 H 1.09001 * 109.47047 * 183.16880 * 1 2 3 31 31 H 1.09001 * 109.47360 * 239.99835 * 2 1 3 32 32 H 1.09003 * 109.47111 * 120.00064 * 2 1 3 33 33 H 1.08998 * 109.46902 * 55.95585 * 4 3 2 34 34 H 1.08996 * 109.47382 * 175.96251 * 4 3 2 35 35 H 0.96695 * 113.99955 * 179.97438 * 5 4 3 36 36 H 1.09000 * 110.70140 * 144.39167 * 6 3 2 37 37 H 1.08993 * 110.75816 * 21.09702 * 6 3 2 38 38 H 1.09001 * 111.00550 * 206.45200 * 7 6 3 39 39 H 1.09004 * 111.00379 * 82.64314 * 7 6 3 40 40 H 1.08998 * 110.36365 * 155.82415 * 8 7 6 41 41 H 1.09000 * 110.36632 * 278.15311 * 8 7 6 42 42 H 1.09005 * 109.47131 * 300.00329 * 12 10 9 43 43 H 1.08995 * 109.47234 * 60.00122 * 12 10 9 44 44 H 1.07993 * 119.96148 * 0.02562 * 14 13 12 45 45 H 1.07998 * 120.03826 * 180.27750 * 15 14 13 46 46 H 0.96998 * 119.99777 * 179.97438 * 21 20 18 47 47 H 1.07999 * 120.03424 * 180.02562 * 26 16 15 48 48 H 1.07999 * 119.96703 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5679 1.4541 -0.0798 5 8 4.1107 0.8456 1.0938 6 6 1.5719 2.1638 1.2821 7 6 0.3067 2.9270 0.8086 8 6 0.7032 3.3224 -0.6358 9 7 1.4741 2.1729 -1.1436 10 6 1.6342 1.8462 -2.4413 11 8 2.2930 0.8743 -2.7451 12 6 0.9948 2.6886 -3.5148 13 6 1.3242 2.1129 -4.8680 14 6 2.4561 2.5357 -5.5409 15 6 2.7637 2.0058 -6.7785 16 6 1.9289 1.0557 -7.3525 17 8 2.2258 0.5368 -8.5712 18 6 1.4454 -0.4692 -9.0148 19 1 0.5787 -0.7714 -8.4458 20 6 1.7556 -1.1158 -10.2015 21 7 2.8112 -0.7474 -10.8948 22 14 0.6747 -2.5100 -10.8157 23 1 -0.3965 -1.9599 -11.6846 24 1 1.4990 -3.4696 -11.5934 25 1 0.0625 -3.2089 -9.6573 26 6 0.7900 0.6374 -6.6767 27 6 0.4906 1.1673 -5.4372 28 1 -0.3634 0.5622 0.8602 29 1 -0.3634 0.4638 -0.9171 30 1 -0.3633 -1.0261 0.0568 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8899 0.8974 -0.9598 34 1 3.9202 2.4830 -0.1516 35 1 5.0771 0.8179 1.1113 36 1 2.3338 2.8602 1.6324 37 1 1.3192 1.4436 2.0602 38 1 0.1314 3.8111 1.4216 39 1 -0.5663 2.2743 0.8093 40 1 -0.1875 3.4802 -1.2439 41 1 1.3217 4.2199 -0.6272 42 1 -0.0864 2.6946 -3.3762 43 1 1.3748 3.7082 -3.4511 44 1 3.1026 3.2774 -5.0959 45 1 3.6501 2.3331 -7.3016 46 1 3.0285 -1.2000 -11.7248 47 1 0.1391 -0.1015 -7.1202 48 1 -0.3952 0.8428 -4.9114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189183785.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:04 Heat of formation + Delta-G solvation = -85.397630 kcal Electronic energy + Delta-G solvation = -29115.997379 eV Core-core repulsion = 25136.692348 eV Total energy + Delta-G solvation = -3979.305031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.86771 -39.06383 -37.98058 -36.55040 -36.31400 -33.35187 -32.38082 -31.80657 -31.04901 -30.10906 -29.54767 -26.65171 -25.51674 -25.05365 -23.55792 -22.43552 -21.93091 -21.42698 -20.12141 -18.35771 -17.93925 -17.62330 -16.91436 -16.78380 -16.51023 -15.56454 -15.10359 -14.78921 -14.58585 -14.43255 -14.34489 -13.94973 -13.77369 -13.53529 -13.52112 -13.35543 -12.98296 -12.74768 -12.66284 -12.57127 -12.44922 -12.09060 -11.92049 -11.75324 -11.55275 -11.47787 -11.23306 -11.17844 -10.80955 -10.74993 -10.70884 -10.57938 -10.54868 -10.39839 -10.12684 -9.53506 -9.28513 -8.78263 -8.75305 -8.10861 -7.12164 -6.40994 -3.99466 2.27047 2.29558 2.75019 2.86700 3.15343 3.16904 3.21564 4.00378 4.08609 4.24331 4.27346 4.58298 4.60302 4.75300 4.89438 4.98119 4.99203 5.12384 5.18135 5.23618 5.26160 5.31536 5.34188 5.37195 5.38042 5.43447 5.54705 5.62596 5.68217 5.69657 5.77127 5.80492 5.87681 5.88695 5.99308 6.04710 6.25107 6.26761 6.43049 6.46053 6.74497 6.95705 7.09813 7.28142 7.36971 7.41381 7.47530 7.50834 7.88197 8.04458 8.31270 9.04852 9.75649 10.77255 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019567 B = 0.002479 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.646425 B =11291.714768 C =11441.054812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.172 3.828 4 C 0.071 3.929 5 O -0.570 6.570 6 C -0.112 4.112 7 C -0.141 4.141 8 C 0.101 3.899 9 N -0.616 5.616 10 C 0.526 3.474 11 O -0.513 6.513 12 C -0.075 4.075 13 C -0.170 4.170 14 C -0.060 4.060 15 C -0.191 4.191 16 C 0.157 3.843 17 O -0.179 6.179 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.267 1.267 26 C -0.232 4.232 27 C -0.056 4.056 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.380 0.620 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.107 0.893 45 H 0.116 0.884 46 H 0.269 0.731 47 H 0.126 0.874 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.478 8.789 24.985 26.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.087 3.913 4 C -0.008 4.008 5 O -0.374 6.374 6 C -0.150 4.150 7 C -0.179 4.179 8 C -0.022 4.022 9 N -0.354 5.354 10 C 0.316 3.684 11 O -0.387 6.387 12 C -0.114 4.114 13 C -0.171 4.171 14 C -0.078 4.078 15 C -0.211 4.211 16 C 0.103 3.897 17 O -0.082 6.082 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.251 4.251 27 C -0.074 4.074 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.227 0.773 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.125 0.875 45 H 0.134 0.866 46 H 0.079 0.921 47 H 0.144 0.856 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.437 8.138 24.449 26.147 hybrid contribution 0.061 -0.580 -0.461 0.743 sum -4.376 7.559 23.988 25.529 Atomic orbital electron populations 1.21844 0.95799 1.01318 1.01603 1.21796 0.96065 0.95022 1.03428 1.20797 0.91395 0.93206 0.85937 1.22480 0.93544 0.96612 0.88134 1.86378 1.25622 1.83258 1.42191 1.22590 0.97081 0.99319 0.95992 1.23001 0.98603 1.00967 0.95316 1.22307 0.95787 0.89025 0.95126 1.48678 1.52796 1.29159 1.04791 1.20790 0.80713 0.85653 0.81268 1.90731 1.39332 1.27574 1.81052 1.20395 1.01085 0.98703 0.91266 1.18632 0.99210 1.03923 0.95318 1.20380 0.95286 0.98302 0.93820 1.20149 1.01478 1.02307 0.97124 1.19375 0.92273 0.92206 0.85819 1.83973 1.52359 1.45773 1.26109 1.21326 1.07990 1.10555 1.06802 0.89106 1.25282 0.97074 0.98537 0.95646 1.70042 1.24831 1.40344 1.14692 0.85719 0.78985 0.79681 0.79102 1.19903 1.20265 1.19190 1.21099 1.00370 1.06268 0.97368 1.20494 0.97707 0.94764 0.94428 0.92508 0.92862 0.93038 0.90450 0.90882 0.91921 0.93918 0.77311 0.90683 0.89878 0.90016 0.89921 0.90284 0.91413 0.89169 0.89143 0.87500 0.86586 0.92073 0.85621 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.77 37.16 0.33 -1.18 16 2 C -0.12 -1.46 4.54 -26.73 -0.12 -1.58 16 3 C 0.17 1.80 0.48 -130.81 -0.06 1.74 16 4 C 0.07 0.79 5.78 37.16 0.21 1.00 16 5 O -0.57 -5.52 12.82 -35.23 -0.45 -5.97 16 6 C -0.11 -0.87 5.10 -24.87 -0.13 -0.99 16 7 C -0.14 -0.84 6.48 -24.58 -0.16 -1.00 16 8 C 0.10 0.72 6.69 -2.53 -0.02 0.70 16 9 N -0.62 -6.59 1.98 -155.78 -0.31 -6.90 16 10 C 0.53 7.43 7.32 -10.99 -0.08 7.35 16 11 O -0.51 -9.53 13.74 5.56 0.08 -9.46 16 12 C -0.07 -0.96 4.83 -29.04 -0.14 -1.10 16 13 C -0.17 -2.99 4.38 -104.57 -0.46 -3.45 16 14 C -0.06 -1.11 9.69 -39.61 -0.38 -1.50 16 15 C -0.19 -4.23 9.99 -39.39 -0.39 -4.63 16 16 C 0.16 3.95 6.65 -39.10 -0.26 3.69 16 17 O -0.18 -5.26 9.76 0.06 0.00 -5.26 16 18 C -0.39 -11.22 9.49 30.89 0.29 -10.93 16 19 H 0.09 2.43 5.21 -52.49 -0.27 2.15 16 20 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -25.87 13.67 55.48 0.76 -25.11 16 22 Si 0.94 21.02 29.55 -169.99 -5.02 16.00 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 26 C -0.23 -5.27 9.17 -39.40 -0.36 -5.63 16 27 C -0.06 -1.07 9.69 -39.61 -0.38 -1.46 16 28 H 0.06 0.47 5.20 -51.93 -0.27 0.20 16 29 H 0.05 0.60 7.54 -51.93 -0.39 0.21 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 1.16 6.84 -51.93 -0.35 0.80 16 32 H 0.07 0.83 7.90 -51.93 -0.41 0.42 16 33 H 0.06 0.86 6.98 -51.93 -0.36 0.50 16 34 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.38 2.17 9.12 45.56 0.42 2.58 16 36 H 0.07 0.56 7.86 -51.93 -0.41 0.15 16 37 H 0.08 0.64 7.58 -51.93 -0.39 0.24 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.50 5.85 -51.93 -0.30 0.20 16 40 H 0.08 0.48 7.48 -51.93 -0.39 0.09 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.97 7.79 -51.93 -0.40 0.56 16 43 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 44 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 45 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 46 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.13 2.86 5.65 -52.49 -0.30 2.56 16 48 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 381.50 15.07 5.75 5.75 Total: -1.00 -34.87 381.50 -7.77 -42.64 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.36 Total: 6.30 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -2.21 Total: -17.99 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: 0.45 Total: -32.01 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.37 Total: -20.68 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.87 -7.77 -42.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189183785.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.757 kcal (2) G-P(sol) polarization free energy of solvation -34.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds