Wall clock time and date at job start Tue Mar 31 2020 18:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47072 * 2 1 4 4 C 1.52999 * 109.87598 * 183.17802 * 3 2 1 5 5 O 1.42903 * 109.46898 * 295.95948 * 4 3 2 6 6 C 1.54374 * 109.84377 * 61.99992 * 3 2 1 7 7 C 1.55157 * 102.91928 * 262.72935 * 6 3 2 8 8 C 1.54913 * 101.61983 * 324.54944 * 7 6 3 9 9 N 1.47021 * 109.88101 * 304.19557 * 3 2 1 10 10 C 1.34779 * 125.64724 * 300.43275 * 9 3 2 11 11 O 1.21283 * 119.99725 * 0.02926 * 10 9 3 12 12 C 1.50695 * 119.99970 * 180.02562 * 10 9 3 13 13 C 1.50698 * 109.47088 * 180.02562 * 12 10 9 14 14 C 1.38304 * 119.93360 * 269.72522 * 13 12 10 15 15 C 1.38098 * 120.07111 * 179.72381 * 14 13 12 16 16 C 1.38888 * 119.92791 * 0.54984 * 15 14 13 17 17 O 1.35749 * 120.06732 * 179.74730 * 16 15 14 18 18 C 1.34828 * 116.99974 * 173.95875 * 17 16 15 19 19 H 1.07994 * 119.99855 * 5.09351 * 18 17 16 20 20 C 1.38659 * 120.00070 * 185.09711 * 18 17 16 21 21 N 1.31558 * 119.99748 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00114 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47198 * 89.99698 * 22 20 18 24 24 H 1.48497 * 109.47094 * 210.00004 * 22 20 18 25 25 H 1.48502 * 109.47019 * 329.99538 * 22 20 18 26 26 C 1.38879 * 119.86195 * 359.72714 * 16 15 14 27 27 C 1.38094 * 119.93218 * 0.02562 * 26 16 15 28 28 H 1.08997 * 109.47364 * 303.16685 * 1 2 3 29 29 H 1.09003 * 109.47249 * 63.17243 * 1 2 3 30 30 H 1.09001 * 109.47047 * 183.16880 * 1 2 3 31 31 H 1.09001 * 109.47360 * 239.99835 * 2 1 3 32 32 H 1.09003 * 109.47111 * 120.00064 * 2 1 3 33 33 H 1.08998 * 109.46902 * 55.95585 * 4 3 2 34 34 H 1.08996 * 109.47382 * 175.96251 * 4 3 2 35 35 H 0.96695 * 113.99955 * 179.97438 * 5 4 3 36 36 H 1.09000 * 110.70140 * 144.39167 * 6 3 2 37 37 H 1.08993 * 110.75816 * 21.09702 * 6 3 2 38 38 H 1.09001 * 111.00550 * 206.45200 * 7 6 3 39 39 H 1.09004 * 111.00379 * 82.64314 * 7 6 3 40 40 H 1.08998 * 110.36365 * 155.82415 * 8 7 6 41 41 H 1.09000 * 110.36632 * 278.15311 * 8 7 6 42 42 H 1.09005 * 109.47131 * 300.00329 * 12 10 9 43 43 H 1.08995 * 109.47234 * 60.00122 * 12 10 9 44 44 H 1.07993 * 119.96148 * 0.02562 * 14 13 12 45 45 H 1.07998 * 120.03826 * 180.27750 * 15 14 13 46 46 H 0.96998 * 119.99777 * 179.97438 * 21 20 18 47 47 H 1.07999 * 120.03424 * 180.02562 * 26 16 15 48 48 H 1.07999 * 119.96703 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5679 1.4541 -0.0798 5 8 4.1107 0.8456 1.0938 6 6 1.5719 2.1638 1.2821 7 6 0.3067 2.9270 0.8086 8 6 0.7032 3.3224 -0.6358 9 7 1.4741 2.1729 -1.1436 10 6 1.6342 1.8462 -2.4413 11 8 2.2930 0.8743 -2.7451 12 6 0.9948 2.6886 -3.5148 13 6 1.3242 2.1129 -4.8680 14 6 2.4561 2.5357 -5.5409 15 6 2.7637 2.0058 -6.7785 16 6 1.9289 1.0557 -7.3525 17 8 2.2258 0.5368 -8.5712 18 6 1.4454 -0.4692 -9.0148 19 1 0.5787 -0.7714 -8.4458 20 6 1.7556 -1.1158 -10.2015 21 7 2.8112 -0.7474 -10.8948 22 14 0.6747 -2.5100 -10.8157 23 1 -0.3965 -1.9599 -11.6846 24 1 1.4990 -3.4696 -11.5934 25 1 0.0625 -3.2089 -9.6573 26 6 0.7900 0.6374 -6.6767 27 6 0.4906 1.1673 -5.4372 28 1 -0.3634 0.5622 0.8602 29 1 -0.3634 0.4638 -0.9171 30 1 -0.3633 -1.0261 0.0568 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8899 0.8974 -0.9598 34 1 3.9202 2.4830 -0.1516 35 1 5.0771 0.8179 1.1113 36 1 2.3338 2.8602 1.6324 37 1 1.3192 1.4436 2.0602 38 1 0.1314 3.8111 1.4216 39 1 -0.5663 2.2743 0.8093 40 1 -0.1875 3.4802 -1.2439 41 1 1.3217 4.2199 -0.6272 42 1 -0.0864 2.6946 -3.3762 43 1 1.3748 3.7082 -3.4511 44 1 3.1026 3.2774 -5.0959 45 1 3.6501 2.3331 -7.3016 46 1 3.0285 -1.2000 -11.7248 47 1 0.1391 -0.1015 -7.1202 48 1 -0.3952 0.8428 -4.9114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189183785.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:03 Heat of formation + Delta-G solvation = -109.546949 kcal Electronic energy + Delta-G solvation = -29117.044572 eV Core-core repulsion = 25136.692348 eV Total energy + Delta-G solvation = -3980.352224 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.75591 -40.75400 -39.20971 -38.01810 -37.27727 -34.46813 -34.14585 -32.80807 -32.22362 -31.78568 -30.38205 -28.18672 -27.02015 -26.16828 -24.41981 -23.64973 -23.30616 -22.52010 -21.33705 -19.85474 -19.31326 -18.82683 -18.40631 -17.66696 -17.26412 -16.68139 -16.44029 -16.29457 -15.97114 -15.69293 -15.61402 -15.48129 -15.01415 -14.92314 -14.56169 -14.43877 -14.28468 -14.02086 -13.71557 -13.60489 -13.53876 -13.30144 -12.97431 -12.85833 -12.76738 -12.54883 -12.46176 -12.33252 -12.27409 -12.15636 -12.12374 -11.89753 -11.50845 -11.22895 -11.19278 -10.99119 -10.82036 -10.60011 -9.77727 -9.61855 -8.91025 -8.48649 -6.16814 0.60229 0.65664 1.32546 1.42158 1.50633 1.71997 1.96577 2.16560 2.81702 3.13230 3.36403 3.51375 3.57606 3.67331 3.85382 3.90887 4.03343 4.06860 4.14677 4.19207 4.24514 4.30642 4.42732 4.46289 4.50256 4.56287 4.57850 4.66787 4.71301 4.77976 4.82500 4.93178 4.98528 5.02424 5.07404 5.12406 5.13222 5.18539 5.22351 5.28982 5.31435 5.46598 5.54727 5.62491 5.70498 5.76839 6.01685 6.21500 6.60799 6.76955 6.95943 7.30160 7.77276 8.74941 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019567 B = 0.002479 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.646425 B =11291.714768 C =11441.054812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.165 3.835 4 C 0.077 3.923 5 O -0.575 6.575 6 C -0.106 4.106 7 C -0.132 4.132 8 C 0.090 3.910 9 N -0.608 5.608 10 C 0.524 3.476 11 O -0.572 6.572 12 C -0.072 4.072 13 C -0.143 4.143 14 C -0.057 4.057 15 C -0.206 4.206 16 C 0.113 3.887 17 O -0.233 6.233 18 C -0.414 4.414 19 H 0.099 0.901 20 C -0.024 4.024 21 N -0.922 5.922 22 Si 1.019 2.981 23 H -0.259 1.259 24 H -0.270 1.270 25 H -0.256 1.256 26 C -0.243 4.243 27 C -0.059 4.059 28 H 0.082 0.918 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.025 0.975 34 H 0.053 0.947 35 H 0.396 0.604 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.145 0.855 45 H 0.112 0.888 46 H 0.273 0.727 47 H 0.116 0.884 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.934 10.887 28.859 31.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C 0.080 3.920 4 C -0.003 4.003 5 O -0.382 6.382 6 C -0.144 4.144 7 C -0.169 4.169 8 C -0.031 4.031 9 N -0.344 5.344 10 C 0.314 3.686 11 O -0.450 6.450 12 C -0.111 4.111 13 C -0.144 4.144 14 C -0.075 4.075 15 C -0.225 4.225 16 C 0.063 3.937 17 O -0.140 6.140 18 C -0.491 4.491 19 H 0.116 0.884 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.838 3.162 23 H -0.184 1.184 24 H -0.195 1.195 25 H -0.180 1.180 26 C -0.263 4.263 27 C -0.077 4.077 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.246 0.754 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.127 0.873 39 H 0.102 0.898 40 H 0.117 0.883 41 H 0.105 0.895 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.163 0.837 45 H 0.130 0.870 46 H 0.082 0.918 47 H 0.134 0.866 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.916 10.303 28.418 31.009 hybrid contribution 0.867 -1.044 -1.264 1.854 sum -6.049 9.259 27.155 29.321 Atomic orbital electron populations 1.21807 0.94337 1.01571 1.02194 1.21728 0.97307 0.95812 1.01266 1.20931 0.90957 0.92799 0.87360 1.22345 0.94328 0.96466 0.87122 1.86342 1.27328 1.83217 1.41360 1.22560 0.98263 0.99383 0.94198 1.23012 0.97382 1.01788 0.94764 1.22700 0.96419 0.88034 0.95981 1.48644 1.52116 1.29828 1.03798 1.20881 0.80167 0.84965 0.82575 1.90743 1.42044 1.30067 1.82161 1.20506 1.03387 0.99757 0.87484 1.19232 0.97104 1.01204 0.96897 1.20846 0.96041 0.98352 0.92245 1.20435 1.01260 1.02172 0.98624 1.19922 0.94217 0.93815 0.85777 1.83934 1.54060 1.47435 1.28603 1.21814 1.08546 1.11134 1.07560 0.88350 1.26610 0.98693 1.01340 0.95444 1.70187 1.27476 1.42661 1.15685 0.84585 0.77057 0.75772 0.78768 1.18390 1.19471 1.17957 1.21213 0.99696 1.06550 0.98802 1.20897 0.99165 0.94583 0.93104 0.89931 0.93767 0.93370 0.94652 0.91000 0.95681 0.92837 0.75448 0.89990 0.89692 0.87258 0.89765 0.88320 0.89493 0.85749 0.85433 0.83683 0.87000 0.91809 0.86580 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 8.77 71.98 0.63 -1.96 16 2 C -0.12 -2.79 4.54 30.60 0.14 -2.65 16 3 C 0.16 3.09 0.48 3.97 0.00 3.09 16 4 C 0.08 1.62 5.78 71.98 0.42 2.03 16 5 O -0.58 -10.48 12.82 -148.98 -1.91 -12.39 16 6 C -0.11 -1.23 5.10 31.80 0.16 -1.07 16 7 C -0.13 -0.87 6.48 31.99 0.21 -0.66 16 8 C 0.09 0.78 6.69 86.86 0.58 1.36 16 9 N -0.61 -10.94 1.98 -765.17 -1.52 -12.46 16 10 C 0.52 13.36 7.32 87.66 0.64 14.00 16 11 O -0.57 -21.07 13.74 -3.04 -0.04 -21.11 16 12 C -0.07 -1.51 4.83 29.10 0.14 -1.37 16 13 C -0.14 -4.68 4.38 -19.83 -0.09 -4.77 16 14 C -0.06 -2.04 9.69 22.25 0.22 -1.83 16 15 C -0.21 -9.41 9.99 22.39 0.22 -9.18 16 16 C 0.11 6.00 6.65 22.58 0.15 6.15 16 17 O -0.23 -14.80 9.76 -22.70 -0.22 -15.02 16 18 C -0.41 -25.32 9.49 67.92 0.64 -24.67 16 19 H 0.10 5.57 5.21 -2.91 -0.02 5.55 16 20 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 21 N -0.92 -58.49 13.67 21.61 0.30 -58.19 16 22 Si 1.02 44.58 29.55 68.60 2.03 46.61 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 25 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 26 C -0.24 -11.42 9.17 22.39 0.21 -11.21 16 27 C -0.06 -2.21 9.69 22.25 0.22 -2.00 16 28 H 0.08 1.06 5.20 -2.39 -0.01 1.05 16 29 H 0.04 0.88 7.54 -2.39 -0.02 0.86 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.03 1.10 6.84 -2.39 -0.02 1.08 16 32 H 0.07 1.60 7.90 -2.39 -0.02 1.58 16 33 H 0.02 0.71 6.98 -2.39 -0.02 0.70 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.40 4.12 9.12 -74.06 -0.68 3.44 16 36 H 0.08 0.88 7.86 -2.39 -0.02 0.86 16 37 H 0.08 0.99 7.58 -2.39 -0.02 0.97 16 38 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 39 H 0.08 0.57 5.85 -2.39 -0.01 0.55 16 40 H 0.10 0.54 7.48 -2.39 -0.02 0.52 16 41 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.12 1.88 7.79 -2.38 -0.02 1.86 16 43 H 0.13 1.85 8.08 -2.39 -0.02 1.83 16 44 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 45 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 46 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 47 H 0.12 5.54 5.65 -2.91 -0.02 5.52 16 48 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -85.37 381.50 3.89 -81.48 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.31 Total: 26.75 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 4.96 Total: -35.66 kcal Atomic # 7 Polarization: -69.43 SS G_CDS: -1.22 Total: -70.65 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -2.17 Total: -48.52 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -85.37 3.89 -81.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189183785.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.070 kcal (2) G-P(sol) polarization free energy of solvation -85.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds