Wall clock time and date at job start Tue Mar 31 2020 18:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47563 * 2 1 4 4 C 1.53002 * 109.47397 * 120.00103 * 2 1 3 5 5 C 1.52994 * 109.47113 * 299.99968 * 4 2 1 6 6 O 1.42899 * 109.47316 * 179.97438 * 4 2 1 7 7 C 1.53002 * 109.46887 * 59.99841 * 4 2 1 8 8 N 1.46498 * 109.47162 * 185.00506 * 7 4 2 9 9 C 1.34773 * 120.00102 * 179.97438 * 8 7 4 10 10 O 1.21716 * 120.00412 * 0.02562 * 9 8 7 11 11 C 1.46258 * 119.99912 * 179.97438 * 9 8 7 12 12 C 1.35030 * 119.99739 * 173.07049 * 11 9 8 13 13 C 1.46960 * 120.00136 * 348.87438 * 12 11 9 14 14 C 1.40024 * 120.09815 * 311.81757 * 13 12 11 15 15 C 1.37606 * 119.89488 * 179.69667 * 14 13 12 16 16 C 1.39174 * 120.09961 * 0.60118 * 15 14 13 17 17 O 1.35565 * 119.89871 * 179.69708 * 16 15 14 18 18 C 1.34787 * 117.00316 * 185.61882 * 17 16 15 19 19 H 1.08001 * 119.99567 * 354.90329 * 18 17 16 20 20 C 1.38709 * 120.00188 * 174.90723 * 18 17 16 21 21 N 1.31508 * 120.00126 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99932 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47361 * 89.99951 * 22 20 18 24 24 H 1.48502 * 109.47278 * 209.99893 * 22 20 18 25 25 H 1.48500 * 109.47278 * 330.00100 * 22 20 18 26 26 C 1.39183 * 120.20407 * 359.67509 * 16 15 14 27 27 C 1.37602 * 120.10102 * 0.02562 * 26 16 15 28 28 H 1.08999 * 109.47200 * 59.99686 * 1 2 3 29 29 H 1.08999 * 109.47428 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47004 * 300.00234 * 1 2 3 31 31 H 1.09002 * 109.47348 * 239.99785 * 2 1 3 32 32 H 1.09000 * 109.47453 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47119 * 300.00364 * 3 2 1 34 34 H 1.09002 * 109.46550 * 59.99892 * 3 2 1 35 35 H 1.08999 * 109.47404 * 179.97438 * 5 4 2 36 36 H 1.08996 * 109.47316 * 299.99938 * 5 4 2 37 37 H 1.09000 * 109.47176 * 59.99763 * 5 4 2 38 38 H 0.96702 * 113.99715 * 299.99487 * 6 4 2 39 39 H 1.08994 * 109.47392 * 65.00419 * 7 4 2 40 40 H 1.09006 * 109.47209 * 305.00091 * 7 4 2 41 41 H 0.97002 * 120.00139 * 359.97438 * 8 7 4 42 42 H 1.07998 * 120.00043 * 353.07777 * 11 9 8 43 43 H 1.08005 * 119.99376 * 169.14915 * 12 11 9 44 44 H 1.07999 * 120.05528 * 0.02562 * 14 13 12 45 45 H 1.08000 * 119.94917 * 180.27627 * 15 14 13 46 46 H 0.97003 * 119.99931 * 179.97438 * 21 20 18 47 47 H 1.07995 * 119.94823 * 180.02562 * 26 16 15 48 48 H 1.07988 * 120.05253 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5301 -0.0001 2.4985 6 8 3.4690 -0.7218 1.2489 7 6 1.5300 -2.1638 1.2492 8 7 1.9175 -2.8188 2.5010 9 6 1.5734 -4.1026 2.7244 10 8 0.9412 -4.7180 1.8859 11 6 1.9608 -4.7566 3.9739 12 6 1.4994 -5.9930 4.2600 13 6 0.4252 -6.5824 3.4486 14 6 -0.7259 -5.8389 3.1607 15 6 -1.7265 -6.3927 2.3954 16 6 -1.6011 -7.6940 1.9181 17 8 -2.5920 -8.2377 1.1696 18 6 -2.4642 -9.5374 0.8360 19 1 -1.5632 -10.0747 1.0929 20 6 -3.4897 -10.1847 0.1627 21 7 -4.5869 -9.5306 -0.1497 22 14 -3.3121 -11.9857 -0.3002 23 1 -3.8347 -12.8338 0.8011 24 1 -4.0819 -12.2561 -1.5410 25 1 -1.8787 -12.2991 -0.5288 26 6 -0.4612 -8.4388 2.2066 27 6 0.5471 -7.8912 2.9660 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.8930 -0.5141 3.3884 36 1 1.8934 1.0276 2.4985 37 1 0.4401 -0.0001 2.4985 38 1 3.8619 -1.1638 0.4838 39 1 1.9646 -2.7028 0.4074 40 1 0.4436 -2.1651 1.1596 41 1 2.4217 -2.3285 3.1691 42 1 2.6157 -4.2507 4.6678 43 1 1.9169 -6.5469 5.0879 44 1 -0.8261 -4.8306 3.5343 45 1 -2.6127 -5.8185 2.1691 46 1 -5.3039 -9.9832 -0.6209 47 1 -0.3681 -9.4481 1.8338 48 1 1.4313 -8.4696 3.1890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254954645.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:57 Heat of formation + Delta-G solvation = -71.386826 kcal Electronic energy + Delta-G solvation = -28401.595263 eV Core-core repulsion = 24422.897786 eV Total energy + Delta-G solvation = -3978.697477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.14971 -39.17572 -38.49216 -36.45425 -34.68820 -34.20495 -33.02392 -32.10577 -30.13114 -30.10115 -28.35898 -27.71796 -26.57645 -25.37966 -23.70907 -22.28783 -21.73157 -20.84218 -19.92263 -19.21031 -17.91559 -17.33468 -17.01478 -16.61599 -15.98151 -15.40989 -15.22426 -14.80456 -14.53601 -14.50234 -14.12820 -14.02750 -13.64127 -13.50363 -13.37102 -13.22205 -13.04124 -12.86748 -12.63101 -12.46220 -12.42405 -12.15210 -12.11294 -11.89143 -11.68904 -11.52785 -11.30636 -11.19881 -10.98804 -10.70718 -10.66504 -10.61122 -10.41185 -10.16052 -9.47057 -9.35713 -9.15343 -8.90276 -8.69007 -7.94661 -6.85960 -6.43755 -3.99758 1.31153 2.43711 2.67599 3.14822 3.15734 3.20002 3.30607 3.66360 3.91665 3.98785 4.30570 4.36877 4.50038 4.70231 4.88903 4.89418 5.08117 5.13731 5.16924 5.23101 5.32732 5.35705 5.40684 5.50342 5.54079 5.57767 5.58995 5.62086 5.68788 5.75596 5.77360 5.79555 5.86585 6.00401 6.09767 6.26424 6.35979 6.45045 6.55662 6.60622 6.80653 7.05374 7.14105 7.30059 7.37580 7.46400 7.52239 7.71719 7.94188 8.03010 8.58375 9.02102 9.74579 10.74306 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015661 B = 0.002441 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.412929 B =11466.164411 C =12634.213496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.143 4.143 4 C 0.125 3.875 5 C -0.143 4.143 6 O -0.556 6.556 7 C 0.095 3.905 8 N -0.730 5.730 9 C 0.537 3.463 10 O -0.513 6.513 11 C -0.260 4.260 12 C 0.023 3.977 13 C -0.180 4.180 14 C 0.000 4.000 15 C -0.198 4.198 16 C 0.168 3.832 17 O -0.174 6.174 18 C -0.390 4.390 19 H 0.093 0.907 20 C 0.039 3.961 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.246 4.246 27 C -0.045 4.045 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.377 0.623 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.398 0.602 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.100 0.900 45 H 0.113 0.887 46 H 0.270 0.730 47 H 0.126 0.874 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.471 18.367 5.293 23.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.137 4.137 3 C -0.200 4.200 4 C 0.085 3.915 5 C -0.200 4.200 6 O -0.362 6.362 7 C -0.030 4.030 8 N -0.385 5.385 9 C 0.326 3.674 10 O -0.389 6.389 11 C -0.281 4.281 12 C 0.004 3.996 13 C -0.181 4.181 14 C -0.019 4.019 15 C -0.218 4.218 16 C 0.114 3.886 17 O -0.077 6.077 18 C -0.466 4.466 19 H 0.111 0.889 20 C -0.166 4.166 21 N -0.496 5.496 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.265 4.265 27 C -0.063 4.063 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.225 0.775 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.233 0.767 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.119 0.881 45 H 0.131 0.869 46 H 0.080 0.920 47 H 0.143 0.857 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 13.458 18.280 4.995 23.243 hybrid contribution 0.563 -0.926 -0.544 1.212 sum 14.021 17.355 4.451 22.751 Atomic orbital electron populations 1.22014 0.94197 1.02770 1.02336 1.21696 0.96987 0.97366 0.97648 1.21802 1.01505 0.95018 1.01723 1.21445 0.80999 0.93040 0.96058 1.21852 1.01382 1.00805 0.95928 1.86528 1.18728 1.81109 1.49827 1.22019 1.01267 0.92070 0.87618 1.45914 1.59238 1.12998 1.20324 1.18506 0.79548 0.81040 0.88284 1.91000 1.38053 1.63137 1.46677 1.22659 1.08459 0.98627 0.98350 1.22342 0.90218 0.92622 0.94445 1.18281 0.96110 0.95420 1.08252 1.20414 0.91689 0.95893 0.93873 1.19996 1.01390 0.94766 1.05605 1.19518 0.88133 0.92342 0.88618 1.83907 1.39454 1.26555 1.57770 1.21382 1.03940 0.83586 1.37680 0.88943 1.25312 0.94480 1.00239 0.96545 1.70024 1.05618 1.36823 1.37127 0.85704 0.78802 0.80543 0.78344 1.19845 1.20256 1.19166 1.20960 0.95911 1.01894 1.07779 1.20717 0.96770 0.93128 0.95719 0.92245 0.91712 0.92034 0.90754 0.92102 0.92774 0.92337 0.91954 0.91337 0.90556 0.77532 0.91635 0.90311 0.76732 0.86184 0.86061 0.88149 0.86873 0.91999 0.85666 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 8.50 37.15 0.32 -0.86 16 2 C -0.12 -0.84 2.47 -90.62 -0.22 -1.07 16 3 C -0.14 -0.94 8.70 37.16 0.32 -0.61 16 4 C 0.13 0.99 0.53 -90.62 -0.05 0.94 16 5 C -0.14 -1.05 7.91 37.15 0.29 -0.76 16 6 O -0.56 -4.43 12.25 -35.23 -0.43 -4.87 16 7 C 0.09 1.00 4.60 -4.04 -0.02 0.98 16 8 N -0.73 -8.20 5.18 -61.76 -0.32 -8.52 16 9 C 0.54 7.99 6.94 -13.04 -0.09 7.90 16 10 O -0.51 -10.04 12.49 5.17 0.06 -9.98 16 11 C -0.26 -3.33 9.93 -37.50 -0.37 -3.70 16 12 C 0.02 0.33 9.77 -37.19 -0.36 -0.03 16 13 C -0.18 -3.36 4.34 -105.03 -0.46 -3.81 16 14 C 0.00 0.00 6.78 -39.14 -0.27 -0.27 16 15 C -0.20 -4.58 9.97 -39.46 -0.39 -4.97 16 16 C 0.17 4.33 6.66 -38.88 -0.26 4.07 16 17 O -0.17 -5.16 9.74 0.74 0.01 -5.16 16 18 C -0.39 -11.19 9.48 30.91 0.29 -10.89 16 19 H 0.09 2.46 5.18 -52.49 -0.27 2.19 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -25.68 13.67 55.48 0.76 -24.92 16 22 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 C -0.25 -5.69 9.14 -39.46 -0.36 -6.05 16 27 C -0.04 -0.89 9.78 -39.15 -0.38 -1.27 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.57 6.32 -51.93 -0.33 0.24 16 30 H 0.06 0.43 6.43 -51.92 -0.33 0.10 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.41 7.68 -51.93 -0.40 0.01 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 35 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 36 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 37 H 0.08 0.54 6.43 -51.93 -0.33 0.21 16 38 H 0.38 2.12 9.04 45.56 0.41 2.53 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.93 6.17 -51.93 -0.32 0.61 16 41 H 0.40 3.61 6.97 -40.82 -0.28 3.33 16 42 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 44 H 0.10 1.82 7.46 -52.49 -0.39 1.43 16 45 H 0.11 2.54 8.06 -52.49 -0.42 2.12 16 46 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.13 2.87 5.62 -52.49 -0.29 2.57 16 48 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 385.04 15.07 5.80 5.80 Total: -1.00 -34.36 385.04 -7.32 -41.67 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.07 Total: 9.56 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -2.10 Total: -19.44 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.44 Total: -33.44 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.36 Total: -20.00 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.36 -7.32 -41.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254954645.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.713 kcal (2) G-P(sol) polarization free energy of solvation -34.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds