Wall clock time and date at job start Tue Mar 31 2020 18:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47563 * 2 1 4 4 C 1.53002 * 109.47397 * 120.00103 * 2 1 3 5 5 C 1.52994 * 109.47113 * 299.99968 * 4 2 1 6 6 O 1.42899 * 109.47316 * 179.97438 * 4 2 1 7 7 C 1.53002 * 109.46887 * 59.99841 * 4 2 1 8 8 N 1.46498 * 109.47162 * 185.00506 * 7 4 2 9 9 C 1.34773 * 120.00102 * 179.97438 * 8 7 4 10 10 O 1.21716 * 120.00412 * 0.02562 * 9 8 7 11 11 C 1.46258 * 119.99912 * 179.97438 * 9 8 7 12 12 C 1.35030 * 119.99739 * 173.07049 * 11 9 8 13 13 C 1.46960 * 120.00136 * 348.87438 * 12 11 9 14 14 C 1.40024 * 120.09815 * 311.81757 * 13 12 11 15 15 C 1.37606 * 119.89488 * 179.69667 * 14 13 12 16 16 C 1.39174 * 120.09961 * 0.60118 * 15 14 13 17 17 O 1.35565 * 119.89871 * 179.69708 * 16 15 14 18 18 C 1.34787 * 117.00316 * 185.61882 * 17 16 15 19 19 H 1.08001 * 119.99567 * 354.90329 * 18 17 16 20 20 C 1.38709 * 120.00188 * 174.90723 * 18 17 16 21 21 N 1.31508 * 120.00126 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99932 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47361 * 89.99951 * 22 20 18 24 24 H 1.48502 * 109.47278 * 209.99893 * 22 20 18 25 25 H 1.48500 * 109.47278 * 330.00100 * 22 20 18 26 26 C 1.39183 * 120.20407 * 359.67509 * 16 15 14 27 27 C 1.37602 * 120.10102 * 0.02562 * 26 16 15 28 28 H 1.08999 * 109.47200 * 59.99686 * 1 2 3 29 29 H 1.08999 * 109.47428 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47004 * 300.00234 * 1 2 3 31 31 H 1.09002 * 109.47348 * 239.99785 * 2 1 3 32 32 H 1.09000 * 109.47453 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47119 * 300.00364 * 3 2 1 34 34 H 1.09002 * 109.46550 * 59.99892 * 3 2 1 35 35 H 1.08999 * 109.47404 * 179.97438 * 5 4 2 36 36 H 1.08996 * 109.47316 * 299.99938 * 5 4 2 37 37 H 1.09000 * 109.47176 * 59.99763 * 5 4 2 38 38 H 0.96702 * 113.99715 * 299.99487 * 6 4 2 39 39 H 1.08994 * 109.47392 * 65.00419 * 7 4 2 40 40 H 1.09006 * 109.47209 * 305.00091 * 7 4 2 41 41 H 0.97002 * 120.00139 * 359.97438 * 8 7 4 42 42 H 1.07998 * 120.00043 * 353.07777 * 11 9 8 43 43 H 1.08005 * 119.99376 * 169.14915 * 12 11 9 44 44 H 1.07999 * 120.05528 * 0.02562 * 14 13 12 45 45 H 1.08000 * 119.94917 * 180.27627 * 15 14 13 46 46 H 0.97003 * 119.99931 * 179.97438 * 21 20 18 47 47 H 1.07995 * 119.94823 * 180.02562 * 26 16 15 48 48 H 1.07988 * 120.05253 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5301 -0.0001 2.4985 6 8 3.4690 -0.7218 1.2489 7 6 1.5300 -2.1638 1.2492 8 7 1.9175 -2.8188 2.5010 9 6 1.5734 -4.1026 2.7244 10 8 0.9412 -4.7180 1.8859 11 6 1.9608 -4.7566 3.9739 12 6 1.4994 -5.9930 4.2600 13 6 0.4252 -6.5824 3.4486 14 6 -0.7259 -5.8389 3.1607 15 6 -1.7265 -6.3927 2.3954 16 6 -1.6011 -7.6940 1.9181 17 8 -2.5920 -8.2377 1.1696 18 6 -2.4642 -9.5374 0.8360 19 1 -1.5632 -10.0747 1.0929 20 6 -3.4897 -10.1847 0.1627 21 7 -4.5869 -9.5306 -0.1497 22 14 -3.3121 -11.9857 -0.3002 23 1 -3.8347 -12.8338 0.8011 24 1 -4.0819 -12.2561 -1.5410 25 1 -1.8787 -12.2991 -0.5288 26 6 -0.4612 -8.4388 2.2066 27 6 0.5471 -7.8912 2.9660 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.8930 -0.5141 3.3884 36 1 1.8934 1.0276 2.4985 37 1 0.4401 -0.0001 2.4985 38 1 3.8619 -1.1638 0.4838 39 1 1.9646 -2.7028 0.4074 40 1 0.4436 -2.1651 1.1596 41 1 2.4217 -2.3285 3.1691 42 1 2.6157 -4.2507 4.6678 43 1 1.9169 -6.5469 5.0879 44 1 -0.8261 -4.8306 3.5343 45 1 -2.6127 -5.8185 2.1691 46 1 -5.3039 -9.9832 -0.6209 47 1 -0.3681 -9.4481 1.8338 48 1 1.4313 -8.4696 3.1890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254954645.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:56 Heat of formation + Delta-G solvation = -96.427344 kcal Electronic energy + Delta-G solvation = -28402.681101 eV Core-core repulsion = 24422.897786 eV Total energy + Delta-G solvation = -3979.783316 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.20975 -40.62840 -39.76959 -38.14180 -35.31562 -35.28308 -34.58966 -33.91082 -31.82439 -30.93537 -29.64996 -28.56572 -27.55562 -27.19789 -24.75429 -23.60421 -23.27201 -22.20427 -20.83621 -20.21878 -19.77002 -18.91255 -18.13922 -17.77687 -16.84232 -16.49360 -16.37735 -16.23385 -16.11350 -15.65476 -15.52043 -15.35771 -15.20100 -14.73955 -14.51668 -14.45638 -14.24952 -13.91924 -13.77288 -13.62990 -13.56640 -13.32198 -13.03598 -12.99113 -12.78720 -12.62389 -12.48304 -12.37919 -12.21730 -12.17425 -12.13052 -11.79173 -11.33927 -11.23381 -11.01604 -10.83547 -10.58434 -10.40320 -9.99266 -9.61137 -8.58362 -8.48569 -6.15742 0.04540 0.70539 1.08277 1.33337 1.44961 1.51683 2.17138 2.34395 2.48998 2.86059 3.21930 3.28908 3.50553 3.59980 3.72162 3.84698 3.99955 4.08052 4.15824 4.16897 4.19773 4.28616 4.51400 4.54455 4.59990 4.65143 4.76071 4.77125 4.80036 4.89454 4.93978 4.99551 5.03495 5.05804 5.09721 5.15536 5.20952 5.25850 5.26559 5.42419 5.46049 5.50077 5.55540 5.67471 5.72446 5.82887 6.02393 6.24903 6.69863 6.77593 6.95529 7.46228 7.77922 8.74882 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015661 B = 0.002441 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.412929 B =11466.164411 C =12634.213496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.139 4.139 4 C 0.138 3.862 5 C -0.145 4.145 6 O -0.560 6.560 7 C 0.094 3.906 8 N -0.710 5.710 9 C 0.524 3.476 10 O -0.569 6.569 11 C -0.227 4.227 12 C 0.002 3.998 13 C -0.150 4.150 14 C 0.001 3.999 15 C -0.215 4.215 16 C 0.124 3.876 17 O -0.232 6.232 18 C -0.415 4.415 19 H 0.102 0.898 20 C -0.024 4.024 21 N -0.922 5.922 22 Si 1.022 2.978 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.253 1.253 26 C -0.254 4.254 27 C -0.052 4.052 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.387 0.613 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.413 0.587 42 H 0.172 0.828 43 H 0.169 0.831 44 H 0.121 0.879 45 H 0.102 0.898 46 H 0.273 0.727 47 H 0.119 0.881 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.388 19.617 7.674 27.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.135 4.135 3 C -0.196 4.196 4 C 0.097 3.903 5 C -0.202 4.202 6 O -0.368 6.368 7 C -0.031 4.031 8 N -0.363 5.363 9 C 0.314 3.686 10 O -0.449 6.449 11 C -0.247 4.247 12 C -0.017 4.017 13 C -0.151 4.151 14 C -0.017 4.017 15 C -0.235 4.235 16 C 0.073 3.927 17 O -0.138 6.138 18 C -0.491 4.491 19 H 0.119 0.881 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.840 3.160 23 H -0.185 1.185 24 H -0.195 1.195 25 H -0.177 1.177 26 C -0.274 4.274 27 C -0.070 4.070 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.237 0.763 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.251 0.749 42 H 0.189 0.811 43 H 0.186 0.814 44 H 0.139 0.861 45 H 0.120 0.880 46 H 0.082 0.918 47 H 0.137 0.863 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 17.457 19.608 7.429 27.283 hybrid contribution -0.324 -0.900 -1.100 1.457 sum 17.133 18.708 6.329 26.145 Atomic orbital electron populations 1.22011 0.94652 1.01732 1.02949 1.21679 0.96550 0.97964 0.97318 1.21765 1.01432 0.94226 1.02178 1.21301 0.81095 0.91112 0.96790 1.21890 1.01492 1.01268 0.95530 1.86508 1.18407 1.81235 1.50635 1.22067 1.00393 0.93732 0.86899 1.45789 1.57862 1.12037 1.20656 1.19115 0.78957 0.81832 0.88704 1.91008 1.40678 1.64639 1.48603 1.23095 1.07070 0.97323 0.97220 1.22574 0.89904 0.93537 0.95700 1.18860 0.96335 0.94505 1.05380 1.20665 0.91387 0.96744 0.92915 1.20187 1.02285 0.94238 1.06753 1.20004 0.88866 0.93651 0.90189 1.83875 1.41749 1.27300 1.60880 1.21878 1.04817 0.83995 1.38429 0.88079 1.26666 0.93737 1.05643 0.96103 1.70177 1.07017 1.39328 1.39439 0.84554 0.79485 0.73578 0.78348 1.18496 1.19457 1.17696 1.21097 0.96160 1.01692 1.08415 1.21154 0.97051 0.94183 0.94610 0.91812 0.93536 0.91317 0.90895 0.92089 0.92319 0.91942 0.91548 0.90473 0.90528 0.76345 0.92980 0.91881 0.74931 0.81083 0.81369 0.86140 0.87992 0.91764 0.86285 0.83611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 8.50 71.98 0.61 -1.67 16 2 C -0.12 -1.51 2.47 -10.79 -0.03 -1.54 16 3 C -0.14 -1.53 8.70 71.98 0.63 -0.91 16 4 C 0.14 1.91 0.53 -10.79 -0.01 1.90 16 5 C -0.14 -1.76 7.91 71.98 0.57 -1.19 16 6 O -0.56 -7.43 12.25 -148.98 -1.83 -9.26 16 7 C 0.09 1.88 4.60 86.38 0.40 2.27 16 8 N -0.71 -13.88 5.18 -467.50 -2.42 -16.31 16 9 C 0.52 14.02 6.94 86.33 0.60 14.62 16 10 O -0.57 -21.78 12.49 -4.40 -0.05 -21.84 16 11 C -0.23 -4.53 9.93 23.62 0.23 -4.30 16 12 C 0.00 0.05 9.77 23.82 0.23 0.28 16 13 C -0.15 -5.24 4.34 -20.13 -0.09 -5.33 16 14 C 0.00 0.05 6.78 22.55 0.15 0.20 16 15 C -0.22 -10.54 9.97 22.35 0.22 -10.31 16 16 C 0.12 6.78 6.66 22.72 0.15 6.93 16 17 O -0.23 -14.93 9.74 -20.27 -0.20 -15.13 16 18 C -0.42 -25.46 9.48 67.93 0.64 -24.81 16 19 H 0.10 5.70 5.18 -2.91 -0.02 5.69 16 20 C -0.02 -1.43 5.49 84.85 0.47 -0.97 16 21 N -0.92 -58.63 13.67 21.62 0.30 -58.34 16 22 Si 1.02 44.35 29.55 68.60 2.03 46.38 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 25 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 26 C -0.25 -12.13 9.14 22.35 0.20 -11.93 16 27 C -0.05 -1.97 9.78 22.55 0.22 -1.75 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.85 6.32 -2.39 -0.02 0.83 16 30 H 0.07 0.89 6.43 -2.38 -0.02 0.87 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 0.69 7.68 -2.39 -0.02 0.67 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.65 6.43 -2.39 -0.02 0.63 16 35 H 0.07 0.74 6.57 -2.39 -0.02 0.73 16 36 H 0.08 0.84 6.43 -2.39 -0.02 0.82 16 37 H 0.08 0.93 6.43 -2.39 -0.02 0.92 16 38 H 0.39 3.46 9.04 -74.06 -0.67 2.79 16 39 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 1.51 6.17 -2.38 -0.01 1.49 16 41 H 0.41 5.73 6.97 -92.71 -0.65 5.08 16 42 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 43 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 44 H 0.12 4.22 7.46 -2.91 -0.02 4.20 16 45 H 0.10 5.02 8.06 -2.91 -0.02 4.99 16 46 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 47 H 0.12 5.68 5.62 -2.91 -0.02 5.67 16 48 H 0.15 4.30 8.06 -2.92 -0.02 4.28 16 Total: -1.00 -83.14 385.04 2.72 -80.42 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: -0.32 Total: 32.57 kcal Atomic # 6 Polarization: -43.71 SS G_CDS: 5.21 Total: -38.50 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -2.13 Total: -74.64 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -2.08 Total: -46.22 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -83.14 2.72 -80.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254954645.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.005 kcal (2) G-P(sol) polarization free energy of solvation -83.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds