Wall clock time and date at job start Tue Mar 31 2020 18:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46683 * 2 1 4 4 O 1.42897 * 109.46319 * 299.97367 * 3 2 1 5 5 C 1.53038 * 109.45998 * 179.97438 * 3 2 1 6 6 C 1.53195 * 109.31239 * 178.62774 * 5 3 2 7 7 N 1.46922 * 108.77354 * 54.63716 * 6 5 3 8 8 C 1.34782 * 120.63101 * 126.36869 * 7 6 5 9 9 O 1.21275 * 119.99957 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00012 * 179.97438 * 8 7 6 11 11 C 1.50703 * 109.47047 * 179.97438 * 10 8 7 12 12 C 1.38306 * 119.92975 * 270.29820 * 11 10 8 13 13 C 1.38104 * 120.06267 * 180.29756 * 12 11 10 14 14 C 1.38874 * 119.93265 * 359.43007 * 13 12 11 15 15 O 1.35749 * 120.06890 * 180.29770 * 14 13 12 16 16 C 1.34834 * 117.00013 * 354.46142 * 15 14 13 17 17 H 1.07996 * 120.00021 * 5.05939 * 16 15 14 18 18 C 1.38654 * 119.99707 * 185.05824 * 16 15 14 19 19 N 1.31550 * 120.00182 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99577 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47118 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47416 * 119.99910 * 20 18 16 23 23 H 1.48499 * 109.47261 * 240.00285 * 20 18 16 24 24 C 1.38882 * 119.86301 * 0.27303 * 14 13 12 25 25 C 1.38094 * 119.92975 * 0.02562 * 24 14 13 26 26 C 1.46927 * 118.73853 * 306.63972 * 7 6 5 27 27 C 1.52754 * 109.00771 * 53.31594 * 26 7 6 28 28 H 1.09000 * 109.46920 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47823 * 299.99858 * 1 2 3 30 30 H 1.09007 * 109.47085 * 60.00586 * 1 2 3 31 31 H 1.08997 * 109.47555 * 240.00597 * 2 1 3 32 32 H 1.08997 * 109.47052 * 119.99391 * 2 1 3 33 33 H 0.96702 * 114.00395 * 60.01848 * 4 3 2 34 34 H 1.09005 * 109.49653 * 58.67602 * 5 3 2 35 35 H 1.08995 * 109.49970 * 298.57965 * 5 3 2 36 36 H 1.08998 * 109.58937 * 294.85058 * 6 5 3 37 37 H 1.09002 * 109.58496 * 174.42352 * 6 5 3 38 38 H 1.09007 * 109.47286 * 60.00136 * 10 8 7 39 39 H 1.08998 * 109.47397 * 300.00180 * 10 8 7 40 40 H 1.07990 * 119.96779 * 0.02562 * 12 11 10 41 41 H 1.08000 * 120.02708 * 179.69965 * 13 12 11 42 42 H 0.97006 * 119.99724 * 179.97438 * 19 18 16 43 43 H 1.08005 * 120.03486 * 180.02562 * 24 14 13 44 44 H 1.08006 * 119.96521 * 180.02562 * 25 24 14 45 45 H 1.09008 * 109.58498 * 173.14897 * 26 7 6 46 46 H 1.08994 * 109.58853 * 293.56931 * 26 7 6 47 47 H 1.09000 * 109.56618 * 185.55479 * 27 26 7 48 48 H 1.08998 * 109.36742 * 65.49601 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 1.5639 2.1158 -1.1671 5 6 3.5703 1.4424 0.0006 6 6 4.0771 2.8877 -0.0340 7 7 3.4733 3.6274 1.0827 8 6 4.2459 4.3018 1.9572 9 8 5.4517 4.3015 1.8268 10 6 3.6116 5.0562 3.0971 11 6 4.6859 5.7175 3.9215 12 6 5.2561 5.0396 4.9837 13 6 6.2365 5.6453 5.7448 14 6 6.6581 6.9317 5.4353 15 8 7.6259 7.5274 6.1778 16 6 8.0554 6.8634 7.2699 17 1 7.6910 5.8675 7.4743 18 6 8.9649 7.4591 8.1303 19 7 9.4092 8.6719 7.8810 20 14 9.5604 6.5388 9.6429 21 1 8.9159 5.2020 9.6946 22 1 11.0346 6.3746 9.5740 23 1 9.2044 7.3079 10.8623 24 6 6.0880 7.6074 4.3642 25 6 5.1037 6.9988 3.6108 26 6 2.0117 3.6129 1.2314 27 6 1.5277 2.1642 1.2487 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 0.6000 2.1541 -1.2335 34 1 3.9344 0.9080 -0.8769 35 1 3.9337 0.9510 0.9031 36 1 3.7911 3.3527 -0.9774 37 1 5.1625 2.8967 0.0661 38 1 3.0488 4.3634 3.7228 39 1 2.9384 5.8160 2.7000 40 1 4.9311 4.0374 5.2209 41 1 6.6778 5.1172 6.5771 42 1 10.0452 9.0888 8.4832 43 1 6.4141 8.6079 4.1208 44 1 4.6602 7.5235 2.7774 45 1 1.7347 4.1005 2.1662 46 1 1.5539 4.1383 0.3933 47 1 0.4379 2.1435 1.2594 48 1 1.9102 1.6659 2.1394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266122489.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:45 Heat of formation + Delta-G solvation = -95.073119 kcal Electronic energy + Delta-G solvation = -28411.822674 eV Core-core repulsion = 24432.098082 eV Total energy + Delta-G solvation = -3979.724592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.64323 -39.24157 -38.56067 -36.50046 -35.63510 -33.44515 -32.58073 -32.06857 -30.91782 -30.59979 -30.08088 -26.96757 -25.63816 -24.91323 -23.77388 -22.39247 -21.90416 -20.98852 -20.36014 -19.05442 -17.91912 -17.20421 -17.01215 -16.87442 -15.92070 -15.65608 -15.33640 -14.96255 -14.72059 -14.53044 -14.52106 -14.22081 -13.80335 -13.69682 -13.40622 -13.35147 -13.01349 -12.97744 -12.63929 -12.54600 -12.40884 -12.28597 -12.08828 -11.79737 -11.58675 -11.56870 -11.46910 -11.41346 -11.21967 -10.79336 -10.70847 -10.59758 -10.54309 -10.37941 -10.21986 -9.58302 -9.26479 -8.77419 -8.67847 -8.08267 -7.09687 -6.39808 -3.98159 2.31358 2.32513 2.80462 3.01327 3.16458 3.16841 3.22597 3.78510 4.01143 4.18842 4.27178 4.32425 4.53315 4.65906 4.70383 4.85728 4.96602 4.99327 5.02209 5.11559 5.16473 5.21021 5.28670 5.30778 5.36658 5.38244 5.44333 5.48538 5.55266 5.57750 5.65355 5.69931 5.74152 5.78803 5.81865 5.91863 5.98820 6.28064 6.46607 6.48496 6.76958 6.98087 7.11828 7.24587 7.30541 7.41537 7.43720 7.51303 7.90671 8.05837 8.35266 9.06088 9.77537 10.78516 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026410 B = 0.002074 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.942872 B =13497.867604 C =13891.424062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.151 4.151 3 C 0.135 3.865 4 O -0.554 6.554 5 C -0.119 4.119 6 C 0.116 3.884 7 N -0.620 5.620 8 C 0.511 3.489 9 O -0.521 6.521 10 C -0.078 4.078 11 C -0.169 4.169 12 C -0.056 4.056 13 C -0.232 4.232 14 C 0.157 3.843 15 O -0.179 6.179 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.863 5.863 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.191 4.191 25 C -0.059 4.059 26 C 0.113 3.887 27 C -0.164 4.164 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.372 0.628 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.126 0.874 42 H 0.269 0.731 43 H 0.116 0.884 44 H 0.108 0.892 45 H 0.087 0.913 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.904 -15.829 -15.052 30.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.188 4.188 3 C 0.094 3.906 4 O -0.361 6.361 5 C -0.158 4.158 6 C -0.006 4.006 7 N -0.356 5.356 8 C 0.300 3.700 9 O -0.395 6.395 10 C -0.118 4.118 11 C -0.171 4.171 12 C -0.075 4.075 13 C -0.252 4.252 14 C 0.103 3.897 15 O -0.083 6.083 16 C -0.466 4.466 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.499 5.499 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.211 4.211 25 C -0.078 4.078 26 C -0.010 4.010 27 C -0.203 4.203 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.220 0.780 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.144 0.856 42 H 0.079 0.921 43 H 0.135 0.865 44 H 0.126 0.874 45 H 0.105 0.895 46 H 0.090 0.910 47 H 0.099 0.901 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.290 -15.368 -15.130 28.934 hybrid contribution -0.434 -0.767 0.856 1.229 sum -19.724 -16.135 -14.274 29.208 Atomic orbital electron populations 1.21859 0.95576 1.02363 1.01857 1.22205 0.96510 0.97033 1.03089 1.21153 0.94380 0.90342 0.84679 1.86574 1.26436 1.79345 1.43706 1.21916 0.92728 0.97930 1.03184 1.21429 0.99445 0.90422 0.89334 1.48176 1.06625 1.51962 1.28825 1.21055 0.87331 0.78827 0.82778 1.90729 1.14367 1.60950 1.73468 1.20434 0.97740 0.99126 0.94511 1.18658 1.02769 0.95827 0.99803 1.20489 0.95274 0.97501 0.94218 1.21098 1.03012 0.96664 1.04381 1.19383 0.87866 0.91177 0.91274 1.83979 1.44864 1.44377 1.35041 1.21373 1.25533 1.00056 0.99640 0.89059 1.25287 0.96432 0.96094 0.98820 1.70053 1.29700 1.13100 1.37025 0.85648 0.78743 0.79024 0.80004 1.19138 1.20187 1.20182 1.20154 1.01369 1.00931 0.98599 1.20395 0.95953 0.94106 0.97317 1.21516 0.80423 0.96365 1.02710 1.22606 1.01471 0.96961 0.99232 0.92286 0.92134 0.92547 0.91072 0.90991 0.77989 0.90208 0.90296 0.91049 0.89095 0.89206 0.89090 0.87937 0.85614 0.92144 0.86550 0.87412 0.89513 0.91048 0.90121 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.60 9.25 37.16 0.34 -0.26 16 2 C -0.15 -0.79 5.20 -26.73 -0.14 -0.93 16 3 C 0.14 0.87 0.73 -90.57 -0.07 0.80 16 4 O -0.55 -3.77 11.67 -35.23 -0.41 -4.18 16 5 C -0.12 -0.99 5.11 -26.61 -0.14 -1.13 16 6 C 0.12 1.26 6.20 -3.71 -0.02 1.23 16 7 N -0.62 -6.92 2.98 -173.04 -0.52 -7.43 16 8 C 0.51 7.54 7.69 -10.98 -0.08 7.46 16 9 O -0.52 -10.24 15.45 5.56 0.09 -10.15 16 10 C -0.08 -1.03 4.17 -29.04 -0.12 -1.15 16 11 C -0.17 -3.05 4.38 -104.57 -0.46 -3.51 16 12 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 13 C -0.23 -5.33 9.17 -39.40 -0.36 -5.70 16 14 C 0.16 3.98 6.65 -39.11 -0.26 3.72 16 15 O -0.18 -5.30 9.76 0.04 0.00 -5.30 16 16 C -0.39 -11.22 9.49 30.89 0.29 -10.93 16 17 H 0.09 2.45 5.20 -52.49 -0.27 2.17 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 19 N -0.86 -25.90 13.67 55.48 0.76 -25.14 16 20 Si 0.94 21.03 29.55 -169.99 -5.02 16.00 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 C -0.19 -4.30 9.99 -39.40 -0.39 -4.69 16 25 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 26 C 0.11 0.85 6.08 -3.94 -0.02 0.82 16 27 C -0.16 -0.96 4.75 -26.83 -0.13 -1.09 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.21 6.40 -51.93 -0.33 -0.13 16 30 H 0.06 0.17 6.78 -51.92 -0.35 -0.18 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.37 1.35 7.33 45.56 0.33 1.69 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.77 7.81 -51.93 -0.41 0.37 16 37 H 0.09 1.17 7.01 -51.93 -0.36 0.81 16 38 H 0.09 0.97 7.62 -51.93 -0.40 0.57 16 39 H 0.09 0.98 7.90 -51.93 -0.41 0.57 16 40 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 42 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.12 2.51 8.06 -52.48 -0.42 2.09 16 44 H 0.11 1.75 8.06 -52.48 -0.42 1.32 16 45 H 0.09 0.56 5.94 -51.92 -0.31 0.25 16 46 H 0.07 0.50 7.81 -51.93 -0.41 0.10 16 47 H 0.08 0.32 6.36 -51.93 -0.33 -0.01 16 48 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 381.25 15.07 5.75 5.75 Total: -1.00 -35.38 381.25 -8.26 -43.64 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.48 Total: 4.20 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -2.42 Total: -17.39 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.24 Total: -32.57 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.32 Total: -19.63 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.38 -8.26 -43.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266122489.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.431 kcal (2) G-P(sol) polarization free energy of solvation -35.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds