Wall clock time and date at job start Tue Mar 31 2020 18:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46683 * 2 1 4 4 O 1.42897 * 109.46319 * 299.97367 * 3 2 1 5 5 C 1.53038 * 109.45998 * 179.97438 * 3 2 1 6 6 C 1.53195 * 109.31239 * 178.62774 * 5 3 2 7 7 N 1.46922 * 108.77354 * 54.63716 * 6 5 3 8 8 C 1.34782 * 120.63101 * 126.36869 * 7 6 5 9 9 O 1.21275 * 119.99957 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00012 * 179.97438 * 8 7 6 11 11 C 1.50703 * 109.47047 * 179.97438 * 10 8 7 12 12 C 1.38306 * 119.92975 * 270.29820 * 11 10 8 13 13 C 1.38104 * 120.06267 * 180.29756 * 12 11 10 14 14 C 1.38874 * 119.93265 * 359.43007 * 13 12 11 15 15 O 1.35749 * 120.06890 * 180.29770 * 14 13 12 16 16 C 1.34834 * 117.00013 * 354.46142 * 15 14 13 17 17 H 1.07996 * 120.00021 * 5.05939 * 16 15 14 18 18 C 1.38654 * 119.99707 * 185.05824 * 16 15 14 19 19 N 1.31550 * 120.00182 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99577 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47118 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47416 * 119.99910 * 20 18 16 23 23 H 1.48499 * 109.47261 * 240.00285 * 20 18 16 24 24 C 1.38882 * 119.86301 * 0.27303 * 14 13 12 25 25 C 1.38094 * 119.92975 * 0.02562 * 24 14 13 26 26 C 1.46927 * 118.73853 * 306.63972 * 7 6 5 27 27 C 1.52754 * 109.00771 * 53.31594 * 26 7 6 28 28 H 1.09000 * 109.46920 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47823 * 299.99858 * 1 2 3 30 30 H 1.09007 * 109.47085 * 60.00586 * 1 2 3 31 31 H 1.08997 * 109.47555 * 240.00597 * 2 1 3 32 32 H 1.08997 * 109.47052 * 119.99391 * 2 1 3 33 33 H 0.96702 * 114.00395 * 60.01848 * 4 3 2 34 34 H 1.09005 * 109.49653 * 58.67602 * 5 3 2 35 35 H 1.08995 * 109.49970 * 298.57965 * 5 3 2 36 36 H 1.08998 * 109.58937 * 294.85058 * 6 5 3 37 37 H 1.09002 * 109.58496 * 174.42352 * 6 5 3 38 38 H 1.09007 * 109.47286 * 60.00136 * 10 8 7 39 39 H 1.08998 * 109.47397 * 300.00180 * 10 8 7 40 40 H 1.07990 * 119.96779 * 0.02562 * 12 11 10 41 41 H 1.08000 * 120.02708 * 179.69965 * 13 12 11 42 42 H 0.97006 * 119.99724 * 179.97438 * 19 18 16 43 43 H 1.08005 * 120.03486 * 180.02562 * 24 14 13 44 44 H 1.08006 * 119.96521 * 180.02562 * 25 24 14 45 45 H 1.09008 * 109.58498 * 173.14897 * 26 7 6 46 46 H 1.08994 * 109.58853 * 293.56931 * 26 7 6 47 47 H 1.09000 * 109.56618 * 185.55479 * 27 26 7 48 48 H 1.08998 * 109.36742 * 65.49601 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 1.5639 2.1158 -1.1671 5 6 3.5703 1.4424 0.0006 6 6 4.0771 2.8877 -0.0340 7 7 3.4733 3.6274 1.0827 8 6 4.2459 4.3018 1.9572 9 8 5.4517 4.3015 1.8268 10 6 3.6116 5.0562 3.0971 11 6 4.6859 5.7175 3.9215 12 6 5.2561 5.0396 4.9837 13 6 6.2365 5.6453 5.7448 14 6 6.6581 6.9317 5.4353 15 8 7.6259 7.5274 6.1778 16 6 8.0554 6.8634 7.2699 17 1 7.6910 5.8675 7.4743 18 6 8.9649 7.4591 8.1303 19 7 9.4092 8.6719 7.8810 20 14 9.5604 6.5388 9.6429 21 1 8.9159 5.2020 9.6946 22 1 11.0346 6.3746 9.5740 23 1 9.2044 7.3079 10.8623 24 6 6.0880 7.6074 4.3642 25 6 5.1037 6.9988 3.6108 26 6 2.0117 3.6129 1.2314 27 6 1.5277 2.1642 1.2487 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 0.6000 2.1541 -1.2335 34 1 3.9344 0.9080 -0.8769 35 1 3.9337 0.9510 0.9031 36 1 3.7911 3.3527 -0.9774 37 1 5.1625 2.8967 0.0661 38 1 3.0488 4.3634 3.7228 39 1 2.9384 5.8160 2.7000 40 1 4.9311 4.0374 5.2209 41 1 6.6778 5.1172 6.5771 42 1 10.0452 9.0888 8.4832 43 1 6.4141 8.6079 4.1208 44 1 4.6602 7.5235 2.7774 45 1 1.7347 4.1005 2.1662 46 1 1.5539 4.1383 0.3933 47 1 0.4379 2.1435 1.2594 48 1 1.9102 1.6659 2.1394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266122489.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:44 Heat of formation + Delta-G solvation = -119.569278 kcal Electronic energy + Delta-G solvation = -28412.884908 eV Core-core repulsion = 24432.098082 eV Total energy + Delta-G solvation = -3980.786825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.51377 -40.72114 -39.73292 -38.19254 -36.52950 -34.41649 -33.91861 -33.28826 -32.02012 -31.76723 -31.24666 -28.37271 -27.19343 -26.06320 -24.39448 -23.63906 -23.21703 -22.18617 -21.21467 -20.00748 -19.80443 -18.82697 -18.18970 -17.47319 -16.98110 -16.69877 -16.34636 -16.13392 -15.98431 -15.67024 -15.50268 -15.47039 -15.09346 -15.05552 -14.76868 -14.52338 -14.39380 -14.11396 -13.62126 -13.59039 -13.41928 -13.11234 -12.99602 -12.85965 -12.72984 -12.55395 -12.47780 -12.27775 -12.24277 -12.19983 -12.09280 -12.04569 -11.83640 -11.19068 -11.17859 -10.89472 -10.76267 -10.61006 -9.76547 -9.57719 -8.89838 -8.47442 -6.15598 0.61376 0.67045 1.33834 1.42566 1.52818 1.70996 2.08178 2.17529 2.83025 3.16112 3.33338 3.51561 3.67317 3.69529 3.82244 3.90054 4.00948 4.04468 4.13218 4.19412 4.33850 4.36058 4.45087 4.51991 4.55538 4.57219 4.60942 4.65998 4.67606 4.79560 4.84217 4.88123 4.98981 5.02078 5.08207 5.09241 5.14797 5.18288 5.19593 5.30270 5.37380 5.48289 5.55729 5.64162 5.71442 5.77783 6.02957 6.22162 6.48691 6.94153 6.97044 7.28236 7.78603 8.76282 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026410 B = 0.002074 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.942872 B =13497.867604 C =13891.424062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.147 4.147 3 C 0.139 3.861 4 O -0.568 6.568 5 C -0.118 4.118 6 C 0.116 3.884 7 N -0.610 5.610 8 C 0.509 3.491 9 O -0.584 6.584 10 C -0.075 4.075 11 C -0.145 4.145 12 C -0.059 4.059 13 C -0.243 4.243 14 C 0.112 3.888 15 O -0.234 6.234 16 C -0.413 4.413 17 H 0.100 0.900 18 C -0.026 4.026 19 N -0.922 5.922 20 Si 1.021 2.979 21 H -0.252 1.252 22 H -0.269 1.269 23 H -0.265 1.265 24 C -0.206 4.206 25 C -0.058 4.058 26 C 0.104 3.896 27 C -0.160 4.160 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.387 0.613 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.137 0.863 41 H 0.118 0.882 42 H 0.273 0.727 43 H 0.112 0.888 44 H 0.145 0.855 45 H 0.107 0.893 46 H 0.082 0.918 47 H 0.109 0.891 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.985 -18.217 -15.709 34.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.185 4.185 3 C 0.098 3.902 4 O -0.377 6.377 5 C -0.156 4.156 6 C -0.007 4.007 7 N -0.343 5.343 8 C 0.298 3.702 9 O -0.464 6.464 10 C -0.114 4.114 11 C -0.146 4.146 12 C -0.077 4.077 13 C -0.263 4.263 14 C 0.062 3.938 15 O -0.141 6.141 16 C -0.489 4.489 17 H 0.118 0.882 18 C -0.223 4.223 19 N -0.560 5.560 20 Si 0.840 3.160 21 H -0.175 1.175 22 H -0.194 1.194 23 H -0.190 1.190 24 C -0.226 4.226 25 C -0.076 4.076 26 C -0.018 4.018 27 C -0.198 4.198 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.238 0.762 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.155 0.845 41 H 0.135 0.865 42 H 0.082 0.918 43 H 0.130 0.870 44 H 0.163 0.837 45 H 0.125 0.875 46 H 0.100 0.900 47 H 0.128 0.872 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.484 -17.797 -15.846 33.457 hybrid contribution 0.549 -0.135 0.715 0.912 sum -22.935 -17.932 -15.131 32.811 Atomic orbital electron populations 1.21855 0.94144 1.02689 1.02756 1.22149 0.97701 0.95995 1.02651 1.21057 0.92722 0.91249 0.85127 1.86545 1.27996 1.79370 1.43793 1.21888 0.94718 0.95906 1.03089 1.21395 0.97950 0.92146 0.89229 1.48221 1.08242 1.50300 1.27581 1.21253 0.86673 0.78861 0.83386 1.90730 1.16993 1.63471 1.75187 1.20557 0.96453 1.00522 0.93891 1.19262 1.01950 0.94953 0.98437 1.20910 0.94008 0.98906 0.93918 1.21219 1.04126 0.95969 1.04944 1.19932 0.88724 0.92766 0.92377 1.83939 1.47559 1.46100 1.36479 1.21863 1.26200 1.00703 1.00166 0.88237 1.26636 0.96228 0.97116 1.02293 1.70198 1.31380 1.15372 1.39044 0.84500 0.78244 0.78068 0.75168 1.17519 1.19412 1.19013 1.20434 1.02406 1.01166 0.98548 1.20861 0.94550 0.94863 0.97338 1.21886 0.77650 0.97967 1.04273 1.22603 1.03175 0.95493 0.98518 0.92352 0.91203 0.91620 0.91907 0.91155 0.76239 0.90081 0.90740 0.91050 0.92035 0.85426 0.85360 0.84472 0.86460 0.91838 0.86995 0.83736 0.87457 0.89956 0.87238 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.62 9.25 71.98 0.67 0.04 16 2 C -0.15 -1.13 5.20 30.60 0.16 -0.97 16 3 C 0.14 1.36 0.73 -10.76 -0.01 1.35 16 4 O -0.57 -5.86 11.67 -148.98 -1.74 -7.59 16 5 C -0.12 -1.78 5.11 30.67 0.16 -1.62 16 6 C 0.12 2.37 6.20 86.36 0.54 2.91 16 7 N -0.61 -11.78 2.98 -819.75 -2.44 -14.22 16 8 C 0.51 13.55 7.69 87.66 0.67 14.22 16 9 O -0.58 -22.55 15.45 -3.01 -0.05 -22.59 16 10 C -0.08 -1.60 4.17 29.10 0.12 -1.48 16 11 C -0.14 -4.80 4.38 -19.83 -0.09 -4.89 16 12 C -0.06 -2.21 9.69 22.25 0.22 -2.00 16 13 C -0.24 -11.42 9.17 22.39 0.21 -11.22 16 14 C 0.11 5.99 6.65 22.58 0.15 6.14 16 15 O -0.23 -14.86 9.76 -22.77 -0.22 -15.08 16 16 C -0.41 -25.16 9.49 67.92 0.64 -24.52 16 17 H 0.10 5.60 5.20 -2.91 -0.02 5.59 16 18 C -0.03 -1.51 5.49 84.83 0.47 -1.05 16 19 N -0.92 -58.38 13.67 21.61 0.30 -58.08 16 20 Si 1.02 44.36 29.55 68.60 2.03 46.39 16 21 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 24 C -0.21 -9.54 9.99 22.39 0.22 -9.31 16 25 C -0.06 -2.13 9.69 22.25 0.22 -1.91 16 26 C 0.10 1.05 6.08 86.22 0.52 1.58 16 27 C -0.16 -1.14 4.75 30.53 0.14 -1.00 16 28 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.07 0.16 6.40 -2.39 -0.02 0.14 16 30 H 0.06 0.15 6.78 -2.38 -0.02 0.13 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.39 1.27 7.33 -74.06 -0.54 0.72 16 34 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.46 7.81 -2.39 -0.02 1.44 16 37 H 0.06 1.63 7.01 -2.39 -0.02 1.61 16 38 H 0.13 1.88 7.62 -2.38 -0.02 1.86 16 39 H 0.13 1.91 7.90 -2.39 -0.02 1.89 16 40 H 0.14 4.12 8.06 -2.92 -0.02 4.10 16 41 H 0.12 5.57 5.64 -2.91 -0.02 5.55 16 42 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 43 H 0.11 5.11 8.06 -2.91 -0.02 5.08 16 44 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 45 H 0.11 0.68 5.94 -2.38 -0.01 0.67 16 46 H 0.08 0.74 7.81 -2.39 -0.02 0.72 16 47 H 0.11 0.22 6.36 -2.39 -0.02 0.21 16 48 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -85.24 381.25 3.32 -81.92 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.44 Total: 22.98 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 5.01 Total: -33.72 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: -2.15 Total: -72.30 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -2.01 Total: -45.27 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -85.24 3.32 -81.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266122489.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.646 kcal (2) G-P(sol) polarization free energy of solvation -85.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds