Wall clock time and date at job start Tue Mar 31 2020 18:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.54479 * 2 1 4 4 N 1.46497 * 109.47281 * 60.00097 * 3 2 1 5 5 C 1.34771 * 120.00162 * 180.02562 * 4 3 2 6 6 O 1.21280 * 119.99930 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.99965 * 180.27697 * 5 4 3 8 8 C 1.50702 * 109.46931 * 179.72343 * 7 5 4 9 9 C 1.38302 * 119.93155 * 269.72242 * 8 7 5 10 10 C 1.38102 * 120.06708 * 179.72540 * 9 8 7 11 11 C 1.38875 * 119.93171 * 0.57444 * 10 9 8 12 12 O 1.35749 * 120.06955 * 179.68162 * 11 10 9 13 13 C 1.34827 * 116.99954 * 174.48319 * 12 11 10 14 14 H 1.07997 * 120.00174 * 5.05756 * 13 12 11 15 15 C 1.38653 * 120.00116 * 185.05679 * 13 12 11 16 16 N 1.31552 * 120.00581 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99840 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47063 * 89.99832 * 17 15 13 19 19 H 1.48500 * 109.47509 * 209.99930 * 17 15 13 20 20 H 1.48502 * 109.47245 * 330.00242 * 17 15 13 21 21 C 1.38877 * 119.86014 * 359.69813 * 11 10 9 22 22 C 1.38099 * 119.93350 * 0.02562 * 21 11 10 23 23 C 1.53178 * 109.54161 * 120.17701 * 2 1 3 24 24 C 1.53112 * 109.15658 * 63.06500 * 23 2 1 25 25 O 1.42897 * 109.48625 * 57.47185 * 24 23 2 26 26 C 1.42906 * 114.09862 * 298.88826 * 25 24 23 27 27 C 1.53089 * 109.41315 * 61.16308 * 26 25 24 28 28 H 1.09004 * 109.46979 * 59.99562 * 1 2 3 29 29 H 1.08991 * 109.47534 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46862 * 299.99959 * 1 2 3 31 31 H 1.09004 * 109.46900 * 299.99675 * 3 2 1 32 32 H 1.09004 * 109.46844 * 180.02562 * 3 2 1 33 33 H 0.97008 * 119.99802 * 0.02562 * 4 3 2 34 34 H 1.08998 * 109.46758 * 299.72146 * 7 5 4 35 35 H 1.08994 * 109.47138 * 59.71998 * 7 5 4 36 36 H 1.07997 * 119.96127 * 359.97438 * 9 8 7 37 37 H 1.08002 * 120.02890 * 180.27053 * 10 9 8 38 38 H 0.96997 * 120.00448 * 179.97438 * 16 15 13 39 39 H 1.08009 * 120.03355 * 179.97438 * 21 11 10 40 40 H 1.07998 * 119.96402 * 179.97438 * 22 21 11 41 41 H 1.09008 * 109.52181 * 182.87840 * 23 2 1 42 42 H 1.08996 * 109.52354 * 303.07006 * 23 2 1 43 43 H 1.09004 * 109.39905 * 297.49074 * 24 23 2 44 44 H 1.08994 * 109.49097 * 177.50753 * 24 23 2 45 45 H 1.08997 * 109.48265 * 301.17567 * 26 25 24 46 46 H 1.08999 * 109.48722 * 181.15149 * 26 25 24 47 47 H 1.09006 * 109.51869 * 182.48340 * 27 26 25 48 48 H 1.09001 * 109.57703 * 62.32676 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4418 0.0000 4 7 1.5545 2.1331 1.1961 5 6 1.8813 3.4231 1.4092 6 8 2.5793 4.0116 0.6108 7 6 1.3850 4.1323 2.6428 8 6 1.8932 5.5511 2.6452 9 6 3.1019 5.8501 3.2472 10 6 3.5729 7.1483 3.2460 11 6 2.8259 8.1560 2.6501 12 8 3.2833 9.4342 2.6530 13 6 2.5671 10.3421 1.9597 14 1 1.6310 10.0568 1.5029 15 6 3.0325 11.6420 1.8331 16 7 2.3341 12.5278 1.1563 17 14 4.6520 12.1353 2.6226 18 1 5.7608 11.9087 1.6611 19 1 4.6046 13.5724 2.9936 20 1 4.8785 11.3168 3.8409 21 6 1.6099 7.8534 2.0514 22 6 1.1470 6.5523 2.0508 23 6 2.0424 -0.7256 1.2479 24 6 1.5930 -2.1885 1.1985 25 8 2.0770 -2.7956 -0.0011 26 6 1.5912 -2.1878 -1.1998 27 6 2.0424 -0.7257 -1.2479 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6792 1.9561 -0.8901 32 1 3.1319 1.4404 -0.0005 33 1 0.9965 1.6622 1.8349 34 1 0.2950 4.1368 2.6456 35 1 1.7484 3.6147 3.5304 36 1 3.6798 5.0669 3.7150 37 1 4.5190 7.3804 3.7125 38 1 2.6595 13.4373 1.0680 39 1 1.0265 8.6350 1.5874 40 1 0.2012 6.3166 1.5857 41 1 3.1312 -0.6811 1.2739 42 1 1.6359 -0.2482 2.1395 43 1 0.5040 -2.2335 1.2150 44 1 1.9920 -2.7208 2.0619 45 1 0.5023 -2.2329 -1.2147 46 1 1.9889 -2.7196 -2.0641 47 1 1.6360 -0.2483 -2.1396 48 1 3.1311 -0.6801 -1.2745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267749532.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:57 Heat of formation + Delta-G solvation = -96.326719 kcal Electronic energy + Delta-G solvation = -27929.906590 eV Core-core repulsion = 23950.127638 eV Total energy + Delta-G solvation = -3979.778952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.71307 -39.61878 -38.85331 -36.83603 -36.25624 -33.53345 -32.47147 -31.63080 -31.50341 -30.19922 -28.47886 -27.78952 -26.35628 -24.84519 -24.14131 -23.04000 -22.05920 -21.00357 -20.08013 -19.12866 -17.85369 -17.43125 -17.15227 -16.55198 -16.32974 -15.95053 -15.73408 -15.30345 -15.02538 -14.77844 -14.44985 -14.26933 -14.05800 -13.88246 -13.69229 -13.54014 -13.35831 -12.96241 -12.77550 -12.62751 -12.47729 -12.33455 -12.16941 -11.87184 -11.77541 -11.62802 -11.49564 -11.26993 -10.96831 -10.88994 -10.72731 -10.68876 -10.64133 -10.12429 -9.90274 -9.71160 -9.34655 -9.14782 -8.82478 -8.19557 -7.26693 -6.38073 -4.04376 2.19343 2.19859 2.76910 3.15825 3.24896 3.29114 3.43126 3.43978 4.10250 4.12424 4.23074 4.27025 4.49142 4.54597 4.69438 4.72050 4.80291 4.88932 4.95102 5.08114 5.08827 5.13147 5.14624 5.23373 5.24583 5.25288 5.32249 5.42270 5.46529 5.51389 5.59404 5.62211 5.62585 5.69285 5.75456 5.79541 5.90768 6.17136 6.33139 6.37113 6.60627 6.74024 6.83535 7.06177 7.26104 7.34641 7.43359 7.65963 7.84374 8.07845 8.31564 8.97366 9.60300 10.69650 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031517 B = 0.001862 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.187745 B =15036.328459 C =15161.939368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.074 4.074 3 C 0.132 3.868 4 N -0.739 5.739 5 C 0.508 3.492 6 O -0.520 6.520 7 C -0.082 4.082 8 C -0.161 4.161 9 C -0.062 4.062 10 C -0.191 4.191 11 C 0.162 3.838 12 O -0.218 6.218 13 C -0.388 4.388 14 H 0.106 0.894 15 C 0.062 3.938 16 N -0.880 5.880 17 Si 0.906 3.094 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.260 1.260 21 C -0.219 4.219 22 C -0.058 4.058 23 C -0.146 4.146 24 C 0.059 3.941 25 O -0.383 6.383 26 C 0.060 3.940 27 C -0.144 4.144 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.396 0.604 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.279 0.721 39 H 0.133 0.867 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.053 0.947 44 H 0.093 0.907 45 H 0.053 0.947 46 H 0.094 0.906 47 H 0.078 0.922 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.009 -30.309 0.281 30.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.075 4.075 3 C 0.008 3.992 4 N -0.393 5.393 5 C 0.294 3.706 6 O -0.394 6.394 7 C -0.121 4.121 8 C -0.162 4.162 9 C -0.080 4.080 10 C -0.210 4.210 11 C 0.110 3.890 12 O -0.123 6.123 13 C -0.464 4.464 14 H 0.124 0.876 15 C -0.141 4.141 16 N -0.519 5.519 17 Si 0.731 3.269 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.184 1.184 21 C -0.238 4.238 22 C -0.077 4.077 23 C -0.184 4.184 24 C -0.017 4.017 25 O -0.301 6.301 26 C -0.016 4.016 27 C -0.182 4.182 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.231 0.769 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.089 0.911 39 H 0.150 0.850 40 H 0.124 0.876 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.071 0.929 44 H 0.111 0.889 45 H 0.071 0.929 46 H 0.112 0.888 47 H 0.097 0.903 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.181 -29.659 -0.288 29.953 hybrid contribution 0.060 0.442 0.379 0.585 sum -4.121 -29.217 0.092 29.506 Atomic orbital electron populations 1.22006 0.93888 1.02053 1.02635 1.20837 0.96254 0.94429 0.95944 1.21301 0.99180 0.90269 0.88443 1.46110 1.55078 1.12544 1.25616 1.21015 0.80312 0.81028 0.88212 1.90756 1.36373 1.65605 1.46627 1.20427 1.01725 0.94328 0.95668 1.18697 0.97771 0.92601 1.07140 1.20398 0.94554 0.95008 0.98081 1.20149 1.01265 0.91588 1.08015 1.19117 0.92016 0.84710 0.93192 1.83569 1.50401 1.13957 1.64400 1.20769 1.05279 0.89464 1.30867 0.87643 1.24467 0.99073 0.94418 0.96109 1.69644 1.38690 1.04322 1.39202 0.86177 0.82481 0.77531 0.80679 1.19894 1.20823 1.18378 1.21224 0.98268 0.97207 1.07130 1.20561 0.98223 0.92302 0.96590 1.22267 1.02371 0.96068 0.97648 1.22618 0.98427 0.92925 0.87778 1.87948 1.71828 1.56592 1.13781 1.22603 0.98447 0.92773 0.87802 1.22192 1.02347 0.96132 0.97567 0.91941 0.92118 0.92217 0.91458 0.91532 0.76925 0.88956 0.88962 0.87232 0.86558 0.91102 0.84970 0.87567 0.90595 0.90716 0.92923 0.88869 0.92877 0.88791 0.90343 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 7.76 37.16 0.29 -0.47 16 2 C -0.07 -0.45 0.53 -154.32 -0.08 -0.53 16 3 C 0.13 1.16 4.57 -4.04 -0.02 1.14 16 4 N -0.74 -6.63 4.99 -60.29 -0.30 -6.94 16 5 C 0.51 6.72 7.82 -10.99 -0.09 6.63 16 6 O -0.52 -9.67 16.03 5.56 0.09 -9.58 16 7 C -0.08 -0.97 5.83 -29.03 -0.17 -1.14 16 8 C -0.16 -2.73 4.38 -104.57 -0.46 -3.18 16 9 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 10 C -0.19 -3.96 9.99 -39.40 -0.39 -4.36 16 11 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 12 O -0.22 -5.94 8.59 0.06 0.00 -5.94 16 13 C -0.39 -11.22 9.95 30.89 0.31 -10.91 16 14 H 0.11 3.11 5.44 -52.49 -0.29 2.82 16 15 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 16 N -0.88 -25.87 13.96 55.48 0.77 -25.10 16 17 Si 0.91 22.15 28.62 -169.99 -4.86 17.29 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.26 -6.36 7.11 56.52 0.40 -5.95 16 21 C -0.22 -4.93 9.17 -39.40 -0.36 -5.29 16 22 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 23 C -0.15 -0.82 4.70 -26.58 -0.13 -0.95 16 24 C 0.06 0.33 6.57 37.22 0.24 0.58 16 25 O -0.38 -2.98 10.77 -35.23 -0.38 -3.36 16 26 C 0.06 0.35 6.57 37.20 0.24 0.59 16 27 C -0.14 -0.85 4.92 -26.59 -0.13 -0.99 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.27 5.02 -51.93 -0.26 0.01 16 30 H 0.06 0.28 6.87 -51.93 -0.36 -0.08 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.40 2.38 6.21 -40.82 -0.25 2.12 16 34 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 35 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 36 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 38 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.13 3.10 5.64 -52.48 -0.30 2.81 16 40 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 42 H 0.07 0.34 6.98 -51.93 -0.36 -0.02 16 43 H 0.05 0.25 6.61 -51.93 -0.34 -0.10 16 44 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.05 0.26 6.60 -51.93 -0.34 -0.08 16 46 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 381.70 15.07 5.75 5.75 Total: -1.00 -34.25 381.70 -7.92 -42.16 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.13 Total: 2.23 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -1.86 Total: -16.52 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.47 Total: -32.03 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.29 Total: -18.88 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.86 Total: 17.29 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.25 -7.92 -42.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267749532.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.164 kcal (2) G-P(sol) polarization free energy of solvation -34.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds