Wall clock time and date at job start Tue Mar 31 2020 18:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.54479 * 2 1 4 4 N 1.46497 * 109.47281 * 60.00097 * 3 2 1 5 5 C 1.34771 * 120.00162 * 180.02562 * 4 3 2 6 6 O 1.21280 * 119.99930 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.99965 * 180.27697 * 5 4 3 8 8 C 1.50702 * 109.46931 * 179.72343 * 7 5 4 9 9 C 1.38302 * 119.93155 * 269.72242 * 8 7 5 10 10 C 1.38102 * 120.06708 * 179.72540 * 9 8 7 11 11 C 1.38875 * 119.93171 * 0.57444 * 10 9 8 12 12 O 1.35749 * 120.06955 * 179.68162 * 11 10 9 13 13 C 1.34827 * 116.99954 * 174.48319 * 12 11 10 14 14 H 1.07997 * 120.00174 * 5.05756 * 13 12 11 15 15 C 1.38653 * 120.00116 * 185.05679 * 13 12 11 16 16 N 1.31552 * 120.00581 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99840 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47063 * 89.99832 * 17 15 13 19 19 H 1.48500 * 109.47509 * 209.99930 * 17 15 13 20 20 H 1.48502 * 109.47245 * 330.00242 * 17 15 13 21 21 C 1.38877 * 119.86014 * 359.69813 * 11 10 9 22 22 C 1.38099 * 119.93350 * 0.02562 * 21 11 10 23 23 C 1.53178 * 109.54161 * 120.17701 * 2 1 3 24 24 C 1.53112 * 109.15658 * 63.06500 * 23 2 1 25 25 O 1.42897 * 109.48625 * 57.47185 * 24 23 2 26 26 C 1.42906 * 114.09862 * 298.88826 * 25 24 23 27 27 C 1.53089 * 109.41315 * 61.16308 * 26 25 24 28 28 H 1.09004 * 109.46979 * 59.99562 * 1 2 3 29 29 H 1.08991 * 109.47534 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46862 * 299.99959 * 1 2 3 31 31 H 1.09004 * 109.46900 * 299.99675 * 3 2 1 32 32 H 1.09004 * 109.46844 * 180.02562 * 3 2 1 33 33 H 0.97008 * 119.99802 * 0.02562 * 4 3 2 34 34 H 1.08998 * 109.46758 * 299.72146 * 7 5 4 35 35 H 1.08994 * 109.47138 * 59.71998 * 7 5 4 36 36 H 1.07997 * 119.96127 * 359.97438 * 9 8 7 37 37 H 1.08002 * 120.02890 * 180.27053 * 10 9 8 38 38 H 0.96997 * 120.00448 * 179.97438 * 16 15 13 39 39 H 1.08009 * 120.03355 * 179.97438 * 21 11 10 40 40 H 1.07998 * 119.96402 * 179.97438 * 22 21 11 41 41 H 1.09008 * 109.52181 * 182.87840 * 23 2 1 42 42 H 1.08996 * 109.52354 * 303.07006 * 23 2 1 43 43 H 1.09004 * 109.39905 * 297.49074 * 24 23 2 44 44 H 1.08994 * 109.49097 * 177.50753 * 24 23 2 45 45 H 1.08997 * 109.48265 * 301.17567 * 26 25 24 46 46 H 1.08999 * 109.48722 * 181.15149 * 26 25 24 47 47 H 1.09006 * 109.51869 * 182.48340 * 27 26 25 48 48 H 1.09001 * 109.57703 * 62.32676 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4418 0.0000 4 7 1.5545 2.1331 1.1961 5 6 1.8813 3.4231 1.4092 6 8 2.5793 4.0116 0.6108 7 6 1.3850 4.1323 2.6428 8 6 1.8932 5.5511 2.6452 9 6 3.1019 5.8501 3.2472 10 6 3.5729 7.1483 3.2460 11 6 2.8259 8.1560 2.6501 12 8 3.2833 9.4342 2.6530 13 6 2.5671 10.3421 1.9597 14 1 1.6310 10.0568 1.5029 15 6 3.0325 11.6420 1.8331 16 7 2.3341 12.5278 1.1563 17 14 4.6520 12.1353 2.6226 18 1 5.7608 11.9087 1.6611 19 1 4.6046 13.5724 2.9936 20 1 4.8785 11.3168 3.8409 21 6 1.6099 7.8534 2.0514 22 6 1.1470 6.5523 2.0508 23 6 2.0424 -0.7256 1.2479 24 6 1.5930 -2.1885 1.1985 25 8 2.0770 -2.7956 -0.0011 26 6 1.5912 -2.1878 -1.1998 27 6 2.0424 -0.7257 -1.2479 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6792 1.9561 -0.8901 32 1 3.1319 1.4404 -0.0005 33 1 0.9965 1.6622 1.8349 34 1 0.2950 4.1368 2.6456 35 1 1.7484 3.6147 3.5304 36 1 3.6798 5.0669 3.7150 37 1 4.5190 7.3804 3.7125 38 1 2.6595 13.4373 1.0680 39 1 1.0265 8.6350 1.5874 40 1 0.2012 6.3166 1.5857 41 1 3.1312 -0.6811 1.2739 42 1 1.6359 -0.2482 2.1395 43 1 0.5040 -2.2335 1.2150 44 1 1.9920 -2.7208 2.0619 45 1 0.5023 -2.2329 -1.2147 46 1 1.9889 -2.7196 -2.0641 47 1 1.6360 -0.2483 -2.1396 48 1 3.1311 -0.6801 -1.2745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267749532.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:56 Heat of formation + Delta-G solvation = -119.439820 kcal Electronic energy + Delta-G solvation = -27930.908850 eV Core-core repulsion = 23950.127638 eV Total energy + Delta-G solvation = -3980.781211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.40649 -40.91408 -40.18300 -38.34953 -37.09082 -34.53090 -34.36617 -32.91529 -32.05005 -31.80720 -29.25350 -28.58818 -27.64833 -26.50639 -24.60759 -23.75433 -23.65354 -22.35476 -21.25145 -19.83011 -19.62409 -19.11697 -18.16541 -17.32292 -16.90491 -16.83539 -16.64116 -16.45733 -16.06534 -15.84036 -15.70387 -15.59531 -15.38433 -15.18899 -14.84897 -14.69369 -14.35873 -14.26792 -14.15213 -14.05578 -13.51638 -13.19938 -13.05112 -12.87114 -12.75239 -12.53042 -12.40811 -12.35892 -12.28841 -12.21681 -12.03967 -11.93261 -11.41071 -11.28443 -11.15047 -10.96721 -10.81306 -10.35204 -10.04607 -9.78933 -8.98136 -8.51008 -6.23497 0.58420 0.61912 1.29399 1.34321 1.50622 1.75332 2.26510 2.27228 2.78690 3.02001 3.05772 3.18550 3.57661 3.63755 3.74963 3.85073 4.03781 4.08318 4.15050 4.21160 4.23256 4.31364 4.36816 4.47770 4.57557 4.60919 4.66396 4.69861 4.70895 4.73040 4.82234 4.84112 4.84788 4.97675 4.99274 5.02752 5.09286 5.17805 5.25243 5.26374 5.37452 5.47334 5.50755 5.56554 5.73915 5.79505 5.91014 6.24889 6.31516 6.63857 6.83168 7.38048 7.58063 8.60762 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031517 B = 0.001862 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.187745 B =15036.328459 C =15161.939368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C 0.134 3.866 4 N -0.714 5.714 5 C 0.509 3.491 6 O -0.583 6.583 7 C -0.080 4.080 8 C -0.137 4.137 9 C -0.060 4.060 10 C -0.194 4.194 11 C 0.117 3.883 12 O -0.246 6.246 13 C -0.400 4.400 14 H 0.079 0.921 15 C 0.008 3.992 16 N -0.923 5.923 17 Si 0.973 3.027 18 H -0.268 1.268 19 H -0.264 1.264 20 H -0.262 1.262 21 C -0.239 4.239 22 C -0.065 4.065 23 C -0.143 4.143 24 C 0.056 3.944 25 O -0.406 6.406 26 C 0.060 3.940 27 C -0.145 4.145 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.415 0.585 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.153 0.847 37 H 0.128 0.872 38 H 0.285 0.715 39 H 0.106 0.894 40 H 0.133 0.867 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.101 0.899 45 H 0.065 0.935 46 H 0.099 0.901 47 H 0.082 0.918 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.446 -34.098 2.099 34.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.066 4.066 3 C 0.010 3.990 4 N -0.369 5.369 5 C 0.296 3.704 6 O -0.462 6.462 7 C -0.119 4.119 8 C -0.138 4.138 9 C -0.078 4.078 10 C -0.213 4.213 11 C 0.068 3.932 12 O -0.154 6.154 13 C -0.476 4.476 14 H 0.096 0.904 15 C -0.190 4.190 16 N -0.564 5.564 17 Si 0.795 3.205 18 H -0.193 1.193 19 H -0.189 1.189 20 H -0.187 1.187 21 C -0.258 4.258 22 C -0.083 4.083 23 C -0.181 4.181 24 C -0.020 4.020 25 O -0.326 6.326 26 C -0.017 4.017 27 C -0.183 4.183 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.254 0.746 34 H 0.145 0.855 35 H 0.153 0.847 36 H 0.171 0.829 37 H 0.145 0.855 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.151 0.849 41 H 0.079 0.921 42 H 0.110 0.890 43 H 0.085 0.915 44 H 0.119 0.881 45 H 0.084 0.916 46 H 0.117 0.883 47 H 0.101 0.899 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.665 -33.541 1.559 33.899 hybrid contribution 0.076 1.203 -0.201 1.222 sum -4.589 -32.337 1.358 32.689 Atomic orbital electron populations 1.22007 0.92622 1.02882 1.02927 1.20758 0.97087 0.92374 0.96350 1.21280 0.98206 0.91822 0.87735 1.45873 1.53989 1.11309 1.25718 1.21192 0.79449 0.81882 0.87829 1.90763 1.39502 1.67183 1.48781 1.20566 1.03901 0.90742 0.96667 1.19320 0.96415 0.94989 1.03050 1.20953 0.94984 0.94568 0.97274 1.20511 1.01470 0.92130 1.07206 1.19684 0.93502 0.84521 0.95506 1.83507 1.50909 1.15075 1.65927 1.20704 1.04926 0.90547 1.31428 0.90357 1.25310 1.02677 0.94229 0.96827 1.69727 1.40619 1.04930 1.41159 0.85194 0.78026 0.77831 0.79483 1.19321 1.18874 1.18655 1.21256 0.98182 0.98548 1.07834 1.20918 0.99656 0.91137 0.96638 1.22253 1.01506 0.96395 0.97905 1.22757 0.99297 0.92637 0.87351 1.87921 1.72494 1.57356 1.14804 1.22683 0.99155 0.92273 0.87548 1.22193 1.01605 0.96632 0.97885 0.92477 0.91047 0.91132 0.92984 0.93294 0.74610 0.85462 0.84659 0.82907 0.85450 0.90561 0.87627 0.84914 0.92103 0.88957 0.91501 0.88124 0.91638 0.88278 0.89915 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 7.76 71.98 0.56 -0.45 16 2 C -0.07 -0.63 0.53 -52.06 -0.03 -0.66 16 3 C 0.13 2.12 4.57 86.38 0.40 2.52 16 4 N -0.71 -10.20 4.99 -463.06 -2.31 -12.51 16 5 C 0.51 11.64 7.82 87.66 0.69 12.32 16 6 O -0.58 -20.78 16.03 -3.03 -0.05 -20.83 16 7 C -0.08 -1.45 5.83 29.10 0.17 -1.28 16 8 C -0.14 -4.17 4.38 -19.83 -0.09 -4.26 16 9 C -0.06 -1.93 9.69 22.25 0.22 -1.72 16 10 C -0.19 -7.91 9.99 22.39 0.22 -7.69 16 11 C 0.12 5.81 6.65 22.58 0.15 5.96 16 12 O -0.25 -14.09 8.59 -22.70 -0.19 -14.28 16 13 C -0.40 -24.61 9.95 67.92 0.68 -23.94 16 14 H 0.08 5.06 5.44 -2.91 -0.02 5.05 16 15 C 0.01 0.46 5.49 84.83 0.47 0.93 16 16 N -0.92 -56.78 13.96 21.61 0.30 -56.47 16 17 Si 0.97 47.08 28.62 68.60 1.96 49.04 16 18 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 21 C -0.24 -11.21 9.17 22.39 0.21 -11.01 16 22 C -0.07 -2.40 9.69 22.25 0.22 -2.18 16 23 C -0.14 -1.20 4.70 30.69 0.14 -1.05 16 24 C 0.06 0.47 6.57 72.02 0.47 0.94 16 25 O -0.41 -5.55 10.77 -148.98 -1.60 -7.15 16 26 C 0.06 0.58 6.57 72.01 0.47 1.05 16 27 C -0.14 -1.53 4.92 30.68 0.15 -1.37 16 28 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.07 0.37 5.02 -2.39 -0.01 0.36 16 30 H 0.07 0.33 6.87 -2.38 -0.02 0.32 16 31 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.42 2.81 6.21 -92.70 -0.58 2.24 16 34 H 0.13 1.58 8.08 -2.39 -0.02 1.56 16 35 H 0.14 1.46 8.08 -2.39 -0.02 1.44 16 36 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 37 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 38 H 0.28 16.01 8.31 -92.71 -0.77 15.24 16 39 H 0.11 5.43 5.64 -2.91 -0.02 5.41 16 40 H 0.13 4.07 8.06 -2.91 -0.02 4.04 16 41 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 42 H 0.09 0.43 6.98 -2.39 -0.02 0.41 16 43 H 0.07 0.38 6.61 -2.39 -0.02 0.36 16 44 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.07 0.47 6.60 -2.39 -0.02 0.45 16 46 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 48 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -81.19 381.70 3.60 -77.59 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.40 Total: 16.50 kcal Atomic # 6 Polarization: -36.97 SS G_CDS: 5.09 Total: -31.88 kcal Atomic # 7 Polarization: -66.97 SS G_CDS: -2.01 Total: -68.98 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -1.85 Total: -42.26 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 1.96 Total: 49.04 kcal Total: -81.19 3.60 -77.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267749532.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.852 kcal (2) G-P(sol) polarization free energy of solvation -81.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds