Wall clock time and date at job start Tue Mar 31 2020 18:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47185 * 2 1 4 4 C 1.53004 * 109.47346 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47091 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.47090 * 299.99822 * 3 2 1 7 7 N 1.46493 * 109.47138 * 299.99773 * 6 3 2 8 8 C 1.34776 * 119.99933 * 179.97438 * 7 6 3 9 9 O 1.21582 * 119.99748 * 0.02562 * 8 7 6 10 10 C 1.47649 * 120.00001 * 180.02562 * 8 7 6 11 11 C 1.40016 * 119.89637 * 0.24992 * 10 8 7 12 12 C 1.36306 * 120.10434 * 180.25839 * 11 10 8 13 13 C 1.40885 * 119.89590 * 359.47343 * 12 11 10 14 14 C 1.41111 * 120.10921 * 180.30311 * 13 12 11 15 15 H 1.07994 * 120.00597 * 154.53119 * 14 13 12 16 16 C 1.40227 * 119.99382 * 334.52933 * 14 13 12 17 17 N 1.30644 * 120.00033 * 343.05813 * 16 14 13 18 18 Si 1.86799 * 119.99848 * 163.06034 * 16 14 13 19 19 H 1.48501 * 109.47101 * 89.99684 * 18 16 14 20 20 H 1.48501 * 109.47179 * 209.99729 * 18 16 14 21 21 H 1.48501 * 109.46949 * 330.00066 * 18 16 14 22 22 C 1.40889 * 119.79071 * 0.27404 * 13 12 11 23 23 C 1.36316 * 119.89281 * 0.02562 * 22 13 12 24 24 C 1.50702 * 109.47208 * 60.00003 * 3 2 1 25 25 O 1.20824 * 120.00002 * 240.00401 * 24 3 2 26 26 O 1.34226 * 120.00025 * 59.99713 * 24 3 2 27 27 C 1.45196 * 117.00186 * 180.02562 * 26 24 3 28 28 H 1.08995 * 109.47161 * 299.99688 * 1 2 3 29 29 H 1.08997 * 109.46938 * 60.00324 * 1 2 3 30 30 H 1.09004 * 109.47265 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47164 * 239.99921 * 2 1 3 32 32 H 1.08999 * 109.47139 * 120.00429 * 2 1 3 33 33 H 1.09005 * 109.46907 * 300.00002 * 4 3 2 34 34 H 1.08999 * 109.47362 * 59.99738 * 4 3 2 35 35 H 1.09003 * 109.47107 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.47487 * 300.00037 * 5 4 3 37 37 H 1.09005 * 109.47774 * 60.00112 * 5 4 3 38 38 H 1.08997 * 109.46964 * 179.97438 * 6 3 2 39 39 H 1.09002 * 109.46546 * 60.00307 * 6 3 2 40 40 H 0.97004 * 120.00572 * 0.02562 * 7 6 3 41 41 H 1.08002 * 119.94001 * 0.03091 * 11 10 8 42 42 H 1.08006 * 120.05292 * 179.74851 * 12 11 10 43 43 H 0.97005 * 119.99903 * 179.97438 * 17 16 14 44 44 H 1.08001 * 120.05483 * 180.02562 * 22 13 12 45 45 H 1.08000 * 119.94946 * 179.97438 * 23 22 13 46 46 H 1.09001 * 109.47145 * 60.00182 * 27 26 24 47 47 H 1.09001 * 109.47177 * 180.02562 * 27 26 24 48 48 H 1.08998 * 109.47036 * 300.00528 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8850 0.0000 6 6 1.5300 2.1637 -1.2493 7 7 2.0184 1.4732 -2.4454 8 6 1.6924 1.9333 -3.6695 9 8 0.9934 2.9219 -3.7810 10 6 2.1841 1.2370 -4.8750 11 6 2.9847 0.0958 -4.7440 12 6 3.4453 -0.5473 -5.8541 13 6 3.1056 -0.0684 -7.1348 14 6 3.5747 -0.7344 -8.2870 15 1 3.0277 -0.6585 -9.2150 16 6 4.7514 -1.4949 -8.2269 17 7 5.5845 -1.3318 -7.2338 18 14 5.1276 -2.7409 -9.5667 19 1 5.9022 -2.0841 -10.6501 20 1 5.9236 -3.8568 -8.9955 21 1 3.8559 -3.2723 -10.1197 22 6 2.2954 1.0772 -7.2615 23 6 1.8445 1.7173 -6.1456 24 6 1.5376 2.1529 1.2305 25 8 0.8430 3.1353 1.1196 26 8 1.8619 1.6943 2.4496 27 6 1.3423 2.4282 3.5896 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.9337 0.9285 0.8892 34 1 3.9330 0.9288 -0.8908 35 1 5.1700 2.8850 0.0000 36 1 3.7162 3.3994 -0.8895 37 1 3.7170 3.3984 0.8905 38 1 1.8930 3.1915 -1.2491 39 1 0.4400 2.1637 -1.2492 40 1 2.5758 0.6843 -2.3565 41 1 3.2405 -0.2733 -3.7618 42 1 4.0661 -1.4252 -5.7520 43 1 6.3983 -1.8581 -7.1921 44 1 2.0320 1.4477 -8.2412 45 1 1.2237 2.5958 -6.2417 46 1 0.2528 2.4271 3.5565 47 1 1.6786 1.9533 4.5113 48 1 1.7057 3.4553 3.5568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270372763.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:26 Heat of formation + Delta-G solvation = -124.031855 kcal Electronic energy + Delta-G solvation = -29084.071181 eV Core-core repulsion = 25103.090844 eV Total energy + Delta-G solvation = -3980.980337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.23652 -39.24585 -37.76097 -36.88566 -36.40594 -33.87344 -33.18339 -32.49445 -30.26809 -29.45696 -28.52116 -27.73426 -26.20096 -25.08153 -23.30245 -22.22474 -21.79025 -20.94857 -19.79399 -19.39719 -17.54761 -17.41031 -17.22339 -16.85545 -16.10058 -15.66562 -15.51913 -15.10646 -14.65497 -14.38527 -14.03084 -13.86350 -13.77181 -13.31716 -13.21412 -13.11690 -13.05704 -12.77909 -12.71189 -12.39985 -12.15267 -12.10163 -11.92186 -11.77517 -11.57695 -11.37471 -11.26353 -11.15053 -11.00197 -10.97540 -10.83013 -10.67413 -10.63832 -10.37954 -10.06867 -9.57141 -9.36612 -8.98883 -8.58999 -7.73351 -7.54364 -7.04091 -4.61342 2.02873 2.22566 2.39783 2.89918 2.93713 2.99763 3.02406 3.73123 3.83071 3.87189 4.23682 4.37109 4.47135 4.57471 4.76361 4.83770 4.90755 5.01787 5.16096 5.18183 5.23315 5.25158 5.46498 5.56114 5.58217 5.70887 5.78734 5.83107 5.84619 5.88575 5.90859 6.00787 6.06373 6.11776 6.18826 6.30707 6.31391 6.75744 6.81861 6.88738 7.03491 7.12148 7.42545 7.54809 7.63739 7.77279 7.84798 8.06270 8.21252 8.38743 8.62237 8.74094 9.07274 9.87981 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020529 B = 0.002544 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.618013 B =11002.373432 C =11484.153451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.114 4.114 3 C -0.061 4.061 4 C -0.114 4.114 5 C -0.160 4.160 6 C 0.141 3.859 7 N -0.738 5.738 8 C 0.573 3.427 9 O -0.572 6.572 10 C -0.282 4.282 11 C -0.063 4.063 12 C -0.177 4.177 13 C 0.129 3.871 14 C -0.443 4.443 15 H 0.084 0.916 16 C 0.074 3.926 17 N -0.773 5.773 18 Si 0.912 3.088 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.258 1.258 22 C -0.238 4.238 23 C -0.022 4.022 24 C 0.480 3.520 25 O -0.500 6.500 26 O -0.355 6.355 27 C 0.034 3.966 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.396 0.604 41 H 0.087 0.913 42 H 0.120 0.880 43 H 0.286 0.714 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.062 0.938 47 H 0.101 0.899 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.243 -1.134 17.233 17.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.151 4.151 3 C -0.063 4.063 4 C -0.151 4.151 5 C -0.217 4.217 6 C 0.017 3.983 7 N -0.393 5.393 8 C 0.367 3.633 9 O -0.453 6.453 10 C -0.286 4.286 11 C -0.082 4.082 12 C -0.196 4.196 13 C 0.125 3.875 14 C -0.470 4.470 15 H 0.102 0.898 16 C -0.147 4.147 17 N -0.396 5.396 18 Si 0.736 3.264 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.181 1.181 22 C -0.257 4.257 23 C -0.041 4.041 24 C 0.322 3.678 25 O -0.387 6.387 26 O -0.272 6.272 27 C -0.060 4.060 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.232 0.768 41 H 0.105 0.895 42 H 0.138 0.862 43 H 0.097 0.903 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.081 0.919 47 H 0.119 0.881 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.722 -0.190 17.263 17.350 hybrid contribution 0.513 -0.731 -0.241 0.925 sum -1.209 -0.921 17.022 17.090 Atomic orbital electron populations 1.21892 0.95077 1.02469 1.02247 1.21632 0.96814 0.92757 1.03922 1.20888 0.98102 0.96998 0.90308 1.21633 0.90804 0.98755 1.03944 1.21892 1.01656 0.95921 1.02223 1.21033 0.99655 0.95844 0.81754 1.45871 1.55675 1.32706 1.05014 1.18570 0.78727 0.83174 0.82801 1.90654 1.40075 1.27554 1.87037 1.18876 1.14348 1.03755 0.91650 1.20443 0.96199 0.94582 0.96982 1.20966 1.04860 1.02143 0.91639 1.17786 0.87893 0.88641 0.93131 1.19833 1.06027 1.23773 0.97410 0.89759 1.26087 0.95370 0.96330 0.96885 1.69737 1.07972 1.32822 1.29108 0.86229 0.79640 0.79808 0.80730 1.19171 1.19807 1.18144 1.20728 1.09060 0.99371 0.96591 1.20367 0.95341 0.96914 0.91509 1.23348 0.77147 0.82556 0.84720 1.90696 1.35252 1.25666 1.87076 1.86496 1.69860 1.55611 1.15184 1.23272 0.99777 0.97003 0.85945 0.93334 0.91487 0.91747 0.89824 0.90244 0.90250 0.89784 0.91713 0.91478 0.93357 0.90788 0.90801 0.76753 0.89468 0.86199 0.90268 0.88395 0.88097 0.91913 0.88082 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.31 37.16 0.35 -1.35 16 2 C -0.11 -1.13 4.76 -26.73 -0.13 -1.26 16 3 C -0.06 -0.71 0.28 -155.65 -0.04 -0.75 16 4 C -0.11 -1.16 4.76 -26.73 -0.13 -1.28 16 5 C -0.16 -1.75 9.31 37.15 0.35 -1.40 16 6 C 0.14 2.11 3.15 -4.04 -0.01 2.10 16 7 N -0.74 -11.91 4.91 -61.31 -0.30 -12.21 16 8 C 0.57 12.00 7.76 -12.42 -0.10 11.90 16 9 O -0.57 -13.72 16.32 5.29 0.09 -13.64 16 10 C -0.28 -6.30 5.89 -104.73 -0.62 -6.92 16 11 C -0.06 -1.34 9.47 -39.61 -0.38 -1.72 16 12 C -0.18 -4.22 8.63 -39.28 -0.34 -4.56 16 13 C 0.13 3.23 5.57 -106.80 -0.59 2.63 16 14 C -0.44 -10.86 9.05 -37.75 -0.34 -11.20 16 15 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 16 C 0.07 1.71 5.15 -17.31 -0.09 1.62 16 17 N -0.77 -18.18 10.95 55.56 0.61 -17.57 16 18 Si 0.91 17.03 29.59 -169.99 -5.03 12.00 16 19 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 20 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 21 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 22 C -0.24 -5.70 9.73 -39.27 -0.38 -6.09 16 23 C -0.02 -0.52 9.52 -39.61 -0.38 -0.89 16 24 C 0.48 5.93 4.03 36.01 0.14 6.07 16 25 O -0.50 -7.58 15.73 -18.75 -0.29 -7.87 16 26 O -0.36 -3.67 10.37 -39.25 -0.41 -4.08 16 27 C 0.03 0.26 10.56 101.05 1.07 1.32 16 28 H 0.05 0.52 7.22 -51.93 -0.37 0.14 16 29 H 0.07 0.83 6.43 -51.93 -0.33 0.50 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.81 6.86 -51.92 -0.36 0.45 16 32 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 33 H 0.08 0.69 8.12 -51.93 -0.42 0.26 16 34 H 0.08 0.84 6.86 -51.93 -0.36 0.48 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.86 6.43 -51.93 -0.33 0.52 16 37 H 0.05 0.53 7.22 -51.93 -0.37 0.15 16 38 H 0.07 1.22 6.39 -51.93 -0.33 0.89 16 39 H 0.07 1.21 6.39 -51.93 -0.33 0.88 16 40 H 0.40 5.56 4.16 -40.82 -0.17 5.39 16 41 H 0.09 1.55 6.37 -52.49 -0.33 1.21 16 42 H 0.12 2.89 6.18 -52.48 -0.32 2.57 16 43 H 0.29 6.05 8.29 -40.82 -0.34 5.71 16 44 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 45 H 0.10 2.30 7.63 -52.49 -0.40 1.90 16 46 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 47 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 LS Contribution 385.43 15.07 5.81 5.81 Total: -1.00 -29.58 385.43 -8.10 -37.68 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -6.95 Total: 11.67 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -1.62 Total: -11.79 kcal Atomic # 7 Polarization: -30.09 SS G_CDS: 0.31 Total: -29.78 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.62 Total: -25.59 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.58 -8.10 -37.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270372763.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.354 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds