Wall clock time and date at job start Tue Mar 31 2020 18:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47185 * 2 1 4 4 C 1.53004 * 109.47346 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47091 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.47090 * 299.99822 * 3 2 1 7 7 N 1.46493 * 109.47138 * 299.99773 * 6 3 2 8 8 C 1.34776 * 119.99933 * 179.97438 * 7 6 3 9 9 O 1.21582 * 119.99748 * 0.02562 * 8 7 6 10 10 C 1.47649 * 120.00001 * 180.02562 * 8 7 6 11 11 C 1.40016 * 119.89637 * 0.24992 * 10 8 7 12 12 C 1.36306 * 120.10434 * 180.25839 * 11 10 8 13 13 C 1.40885 * 119.89590 * 359.47343 * 12 11 10 14 14 C 1.41111 * 120.10921 * 180.30311 * 13 12 11 15 15 H 1.07994 * 120.00597 * 154.53119 * 14 13 12 16 16 C 1.40227 * 119.99382 * 334.52933 * 14 13 12 17 17 N 1.30644 * 120.00033 * 343.05813 * 16 14 13 18 18 Si 1.86799 * 119.99848 * 163.06034 * 16 14 13 19 19 H 1.48501 * 109.47101 * 89.99684 * 18 16 14 20 20 H 1.48501 * 109.47179 * 209.99729 * 18 16 14 21 21 H 1.48501 * 109.46949 * 330.00066 * 18 16 14 22 22 C 1.40889 * 119.79071 * 0.27404 * 13 12 11 23 23 C 1.36316 * 119.89281 * 0.02562 * 22 13 12 24 24 C 1.50702 * 109.47208 * 60.00003 * 3 2 1 25 25 O 1.20824 * 120.00002 * 240.00401 * 24 3 2 26 26 O 1.34226 * 120.00025 * 59.99713 * 24 3 2 27 27 C 1.45196 * 117.00186 * 180.02562 * 26 24 3 28 28 H 1.08995 * 109.47161 * 299.99688 * 1 2 3 29 29 H 1.08997 * 109.46938 * 60.00324 * 1 2 3 30 30 H 1.09004 * 109.47265 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47164 * 239.99921 * 2 1 3 32 32 H 1.08999 * 109.47139 * 120.00429 * 2 1 3 33 33 H 1.09005 * 109.46907 * 300.00002 * 4 3 2 34 34 H 1.08999 * 109.47362 * 59.99738 * 4 3 2 35 35 H 1.09003 * 109.47107 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.47487 * 300.00037 * 5 4 3 37 37 H 1.09005 * 109.47774 * 60.00112 * 5 4 3 38 38 H 1.08997 * 109.46964 * 179.97438 * 6 3 2 39 39 H 1.09002 * 109.46546 * 60.00307 * 6 3 2 40 40 H 0.97004 * 120.00572 * 0.02562 * 7 6 3 41 41 H 1.08002 * 119.94001 * 0.03091 * 11 10 8 42 42 H 1.08006 * 120.05292 * 179.74851 * 12 11 10 43 43 H 0.97005 * 119.99903 * 179.97438 * 17 16 14 44 44 H 1.08001 * 120.05483 * 180.02562 * 22 13 12 45 45 H 1.08000 * 119.94946 * 179.97438 * 23 22 13 46 46 H 1.09001 * 109.47145 * 60.00182 * 27 26 24 47 47 H 1.09001 * 109.47177 * 180.02562 * 27 26 24 48 48 H 1.08998 * 109.47036 * 300.00528 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8850 0.0000 6 6 1.5300 2.1637 -1.2493 7 7 2.0184 1.4732 -2.4454 8 6 1.6924 1.9333 -3.6695 9 8 0.9934 2.9219 -3.7810 10 6 2.1841 1.2370 -4.8750 11 6 2.9847 0.0958 -4.7440 12 6 3.4453 -0.5473 -5.8541 13 6 3.1056 -0.0684 -7.1348 14 6 3.5747 -0.7344 -8.2870 15 1 3.0277 -0.6585 -9.2150 16 6 4.7514 -1.4949 -8.2269 17 7 5.5845 -1.3318 -7.2338 18 14 5.1276 -2.7409 -9.5667 19 1 5.9022 -2.0841 -10.6501 20 1 5.9236 -3.8568 -8.9955 21 1 3.8559 -3.2723 -10.1197 22 6 2.2954 1.0772 -7.2615 23 6 1.8445 1.7173 -6.1456 24 6 1.5376 2.1529 1.2305 25 8 0.8430 3.1353 1.1196 26 8 1.8619 1.6943 2.4496 27 6 1.3423 2.4282 3.5896 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.9337 0.9285 0.8892 34 1 3.9330 0.9288 -0.8908 35 1 5.1700 2.8850 0.0000 36 1 3.7162 3.3994 -0.8895 37 1 3.7170 3.3984 0.8905 38 1 1.8930 3.1915 -1.2491 39 1 0.4400 2.1637 -1.2492 40 1 2.5758 0.6843 -2.3565 41 1 3.2405 -0.2733 -3.7618 42 1 4.0661 -1.4252 -5.7520 43 1 6.3983 -1.8581 -7.1921 44 1 2.0320 1.4477 -8.2412 45 1 1.2237 2.5958 -6.2417 46 1 0.2528 2.4271 3.5565 47 1 1.6786 1.9533 4.5113 48 1 1.7057 3.4553 3.5568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270372763.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:25 Heat of formation + Delta-G solvation = -139.427696 kcal Electronic energy + Delta-G solvation = -29084.738794 eV Core-core repulsion = 25103.090844 eV Total energy + Delta-G solvation = -3981.647951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.22419 -40.77901 -39.14897 -38.35613 -37.41840 -35.64505 -34.63370 -33.33043 -32.01015 -31.27690 -29.38524 -28.80410 -27.61119 -26.35191 -24.40549 -23.35179 -23.04761 -22.74249 -21.32237 -20.50741 -19.34216 -18.75471 -18.27530 -17.75731 -17.36948 -17.00908 -16.75220 -16.62874 -15.77213 -15.70525 -15.44812 -15.15212 -14.99159 -14.97445 -14.47834 -14.22230 -14.00491 -13.94404 -13.84125 -13.70572 -13.65792 -13.35784 -13.14021 -13.08719 -12.82488 -12.66278 -12.60939 -12.47205 -12.34124 -11.97329 -11.80087 -11.77124 -11.70805 -11.61093 -11.34899 -11.33247 -11.10211 -10.74931 -10.09562 -9.54860 -9.37562 -8.76680 -6.46000 0.45865 1.07569 1.17569 1.40697 1.44250 1.50615 1.56058 2.13434 2.20100 2.45146 2.80666 3.24961 3.50040 3.56445 3.71723 3.85742 4.18448 4.22572 4.28629 4.30749 4.31212 4.32469 4.36436 4.40535 4.45464 4.46525 4.67758 4.69240 4.79138 4.84185 4.94481 4.99965 5.02171 5.03824 5.05384 5.07594 5.18026 5.25381 5.28248 5.32159 5.36552 5.47796 5.61318 5.83980 5.96244 6.01607 6.25434 6.56246 6.62709 6.68851 6.79700 6.91266 7.43215 8.18522 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020529 B = 0.002544 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.618013 B =11002.373432 C =11484.153451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.112 4.112 3 C -0.056 4.056 4 C -0.112 4.112 5 C -0.160 4.160 6 C 0.145 3.855 7 N -0.713 5.713 8 C 0.573 3.427 9 O -0.607 6.607 10 C -0.289 4.289 11 C -0.050 4.050 12 C -0.195 4.195 13 C 0.102 3.898 14 C -0.474 4.474 15 H 0.083 0.917 16 C 0.039 3.961 17 N -0.797 5.797 18 Si 0.985 3.015 19 H -0.263 1.263 20 H -0.261 1.261 21 H -0.259 1.259 22 C -0.253 4.253 23 C -0.034 4.034 24 C 0.485 3.515 25 O -0.537 6.537 26 O -0.350 6.350 27 C 0.026 3.974 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.041 0.959 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.409 0.591 41 H 0.128 0.872 42 H 0.117 0.883 43 H 0.297 0.703 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.060 0.940 47 H 0.137 0.863 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.222 -3.407 18.961 19.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.149 4.149 3 C -0.057 4.057 4 C -0.149 4.149 5 C -0.217 4.217 6 C 0.021 3.979 7 N -0.367 5.367 8 C 0.367 3.633 9 O -0.492 6.492 10 C -0.294 4.294 11 C -0.069 4.069 12 C -0.214 4.214 13 C 0.099 3.901 14 C -0.501 4.501 15 H 0.101 0.899 16 C -0.180 4.180 17 N -0.420 5.420 18 Si 0.805 3.195 19 H -0.188 1.188 20 H -0.185 1.185 21 H -0.182 1.182 22 C -0.273 4.273 23 C -0.054 4.054 24 C 0.328 3.672 25 O -0.426 6.426 26 O -0.265 6.265 27 C -0.067 4.067 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.249 0.751 41 H 0.145 0.855 42 H 0.135 0.865 43 H 0.108 0.892 44 H 0.120 0.880 45 H 0.117 0.883 46 H 0.078 0.922 47 H 0.155 0.845 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.234 -2.487 19.045 19.208 hybrid contribution 0.033 0.056 -0.651 0.654 sum -0.201 -2.431 18.394 18.555 Atomic orbital electron populations 1.21884 0.95833 1.03113 1.00853 1.21703 0.96106 0.91505 1.05577 1.20827 0.99183 0.97451 0.88267 1.21700 0.89288 0.98367 1.05545 1.21885 1.02636 0.96358 1.00837 1.20969 0.98681 0.95446 0.82770 1.45574 1.54545 1.32522 1.04055 1.18429 0.78427 0.82665 0.83807 1.90637 1.41739 1.29109 1.87688 1.19108 1.14284 1.04135 0.91869 1.20712 0.94527 0.93408 0.98267 1.21017 1.05795 1.02616 0.91967 1.18140 0.88582 0.89184 0.94224 1.20088 1.07227 1.25342 0.97425 0.89880 1.26874 0.94478 0.97443 0.99204 1.69747 1.08461 1.33363 1.30442 0.85146 0.79335 0.77315 0.77690 1.18761 1.18454 1.18248 1.20846 1.09673 0.99688 0.97049 1.20499 0.95608 0.97038 0.92217 1.23427 0.76327 0.81859 0.85576 1.90691 1.36995 1.27313 1.87620 1.86476 1.69517 1.55575 1.14955 1.23590 0.99831 0.97262 0.86050 0.93736 0.93934 0.90048 0.89044 0.87620 0.87601 0.89128 0.90165 0.93999 0.93674 0.92635 0.92485 0.75150 0.85451 0.86549 0.89155 0.88028 0.88289 0.92156 0.84517 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 9.31 71.98 0.67 -2.48 16 2 C -0.11 -1.91 4.76 30.59 0.15 -1.76 16 3 C -0.06 -1.19 0.28 -52.92 -0.02 -1.21 16 4 C -0.11 -1.96 4.76 30.59 0.15 -1.81 16 5 C -0.16 -3.28 9.31 71.98 0.67 -2.61 16 6 C 0.15 4.34 3.15 86.38 0.27 4.61 16 7 N -0.71 -22.42 4.91 -466.16 -2.29 -24.71 16 8 C 0.57 24.10 7.76 86.73 0.67 24.78 16 9 O -0.61 -29.92 16.32 -3.97 -0.06 -29.98 16 10 C -0.29 -12.97 5.89 -19.93 -0.12 -13.08 16 11 C -0.05 -2.10 9.47 22.25 0.21 -1.89 16 12 C -0.19 -9.27 8.63 22.47 0.19 -9.07 16 13 C 0.10 5.20 5.57 -21.28 -0.12 5.09 16 14 C -0.47 -23.56 9.05 23.46 0.21 -23.35 16 15 H 0.08 3.99 7.90 -2.91 -0.02 3.97 16 16 C 0.04 1.78 5.15 85.35 0.44 2.22 16 17 N -0.80 -36.96 10.95 21.87 0.24 -36.72 16 18 Si 0.99 34.08 29.59 68.60 2.03 36.11 16 19 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 20 H -0.26 -8.41 7.11 99.48 0.71 -7.71 16 21 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 22 C -0.25 -12.51 9.73 22.47 0.22 -12.30 16 23 C -0.03 -1.65 9.52 22.25 0.21 -1.44 16 24 C 0.48 11.37 4.03 71.24 0.29 11.66 16 25 O -0.54 -16.36 15.73 21.97 0.35 -16.01 16 26 O -0.35 -6.36 10.37 -51.38 -0.53 -6.89 16 27 C 0.03 0.34 10.56 113.37 1.20 1.53 16 28 H 0.04 0.90 7.22 -2.39 -0.02 0.88 16 29 H 0.04 1.04 6.43 -2.39 -0.02 1.03 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 1.44 6.86 -2.38 -0.02 1.43 16 32 H 0.11 1.33 8.11 -2.39 -0.02 1.31 16 33 H 0.11 1.37 8.12 -2.38 -0.02 1.35 16 34 H 0.09 1.49 6.86 -2.39 -0.02 1.48 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.04 1.06 6.43 -2.39 -0.02 1.05 16 37 H 0.04 0.94 7.22 -2.38 -0.02 0.92 16 38 H 0.06 1.89 6.39 -2.39 -0.02 1.88 16 39 H 0.06 1.93 6.39 -2.39 -0.02 1.91 16 40 H 0.41 10.54 4.16 -92.71 -0.39 10.16 16 41 H 0.13 4.14 6.37 -2.91 -0.02 4.12 16 42 H 0.12 5.57 6.18 -2.91 -0.02 5.55 16 43 H 0.30 12.19 8.29 -92.70 -0.77 11.42 16 44 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 45 H 0.10 4.70 7.63 -2.91 -0.02 4.67 16 46 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 47 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 Total: -1.00 -66.13 385.43 5.62 -60.51 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: 0.60 Total: 38.83 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 5.30 Total: -21.13 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -2.05 Total: -61.43 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -0.25 Total: -52.89 kcal Atomic # 14 Polarization: 34.08 SS G_CDS: 2.03 Total: 36.11 kcal Total: -66.13 5.62 -60.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270372763.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.920 kcal (2) G-P(sol) polarization free energy of solvation -66.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds