Wall clock time and date at job start Tue Mar 31 2020 17:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 116.99775 * 2 1 4 4 O 1.20829 * 120.00036 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00176 * 180.02562 * 3 2 1 6 6 O 1.42894 * 109.47333 * 179.97438 * 5 3 2 7 7 C 1.35901 * 116.99882 * 179.97438 * 6 5 3 8 8 C 1.38738 * 120.05612 * 90.00463 * 7 6 5 9 9 C 1.50701 * 120.02327 * 359.95160 * 8 7 6 10 10 C 1.38145 * 119.94459 * 179.97438 * 8 7 6 11 11 C 1.38266 * 120.05487 * 359.97438 * 10 8 7 12 12 C 1.50697 * 119.94172 * 180.02562 * 11 10 8 13 13 N 1.46503 * 109.47151 * 90.00298 * 12 11 10 14 14 C 1.36935 * 119.99933 * 89.99795 * 13 12 11 15 15 H 1.07995 * 120.00327 * 215.48405 * 14 13 12 16 16 C 1.38812 * 119.99903 * 35.48883 * 14 13 12 17 17 N 1.31621 * 119.99963 * 21.46330 * 16 14 13 18 18 Si 1.86799 * 120.00227 * 201.46438 * 16 14 13 19 19 H 1.48503 * 109.47425 * 179.97438 * 18 16 14 20 20 H 1.48496 * 109.47182 * 300.00296 * 18 16 14 21 21 H 1.48504 * 109.47058 * 59.99787 * 18 16 14 22 22 C 1.46494 * 120.00147 * 270.00130 * 13 12 11 23 23 C 1.52996 * 117.50108 * 191.59780 * 22 13 12 24 24 C 1.53002 * 60.00155 * 252.50641 * 23 22 13 25 25 C 1.38258 * 120.11388 * 0.28109 * 11 10 8 26 26 C 1.38151 * 120.05660 * 359.44703 * 25 11 10 27 27 C 1.50693 * 120.03028 * 180.27683 * 26 25 11 28 28 H 1.09002 * 109.47047 * 60.00219 * 1 2 3 29 29 H 1.09003 * 109.46862 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47331 * 299.99961 * 1 2 3 31 31 H 1.09000 * 109.46995 * 59.99225 * 5 3 2 32 32 H 1.09004 * 109.46926 * 300.00043 * 5 3 2 33 33 H 1.08998 * 109.47460 * 270.02354 * 9 8 7 34 34 H 1.09002 * 109.47217 * 30.02955 * 9 8 7 35 35 H 1.09004 * 109.46723 * 150.02277 * 9 8 7 36 36 H 1.07997 * 119.96832 * 180.02562 * 10 8 7 37 37 H 1.08999 * 109.47260 * 330.00311 * 12 11 10 38 38 H 1.09001 * 109.47504 * 210.00174 * 12 11 10 39 39 H 0.97001 * 120.00107 * 178.99916 * 17 16 14 40 40 H 1.09007 * 115.55095 * 337.30258 * 22 13 12 41 41 H 1.09003 * 117.49923 * 359.97438 * 23 22 13 42 42 H 1.09003 * 117.50057 * 145.01654 * 23 22 13 43 43 H 1.08992 * 117.50000 * 252.50780 * 24 23 22 44 44 H 1.08997 * 117.51251 * 107.47369 * 24 23 22 45 45 H 1.08001 * 119.97490 * 179.70230 * 25 11 10 46 46 H 1.09005 * 109.47395 * 270.27387 * 27 26 25 47 47 H 1.09006 * 109.47638 * 30.27297 * 27 26 25 48 48 H 1.09004 * 109.47470 * 150.27046 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 8 3.9714 2.6453 -0.0011 7 6 5.3075 2.8936 -0.0011 8 6 5.9907 3.0203 -1.2019 9 6 5.2519 2.8814 -2.5081 10 6 7.3488 3.2732 -1.1993 11 6 8.0271 3.4008 -0.0012 12 6 9.5084 3.6773 -0.0012 13 7 9.7350 5.1247 -0.0022 14 6 9.8408 5.8019 1.1832 15 1 9.4482 6.8043 1.2694 16 6 10.4527 5.2001 2.2742 17 7 11.2862 4.1980 2.0912 18 14 10.0934 5.8123 4.0020 19 1 10.8659 5.0083 4.9829 20 1 10.4861 7.2401 4.1129 21 1 8.6418 5.6750 4.2839 22 6 9.8484 5.8475 -1.2714 23 6 10.3506 7.2917 -1.2194 24 6 8.8772 7.0044 -1.5148 25 6 7.3495 3.2698 1.1969 26 6 5.9904 3.0223 1.1997 27 6 5.2513 2.8859 2.5059 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.9556 0.7809 -0.8908 32 1 3.9563 0.7807 0.8892 33 1 5.2619 1.8377 -2.8221 34 1 4.2213 3.2124 -2.3796 35 1 5.7381 3.4940 -3.2673 36 1 7.8809 3.3723 -2.1338 37 1 9.9600 3.2383 -0.8909 38 1 9.9599 3.2395 0.8891 39 1 11.7250 3.7868 2.8524 40 1 10.1382 5.2442 -2.1318 41 1 10.5963 7.7043 -0.2408 42 1 10.9712 7.6389 -2.0456 43 1 8.5283 7.1625 -2.5352 44 1 8.1537 7.2274 -0.7306 45 1 7.8825 3.3650 2.1314 46 1 5.2614 1.8427 2.8218 47 1 5.7373 3.4998 3.2643 48 1 4.2207 3.2165 2.3766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271156637.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:28 Heat of formation + Delta-G solvation = -50.822132 kcal Electronic energy + Delta-G solvation = -29162.088535 eV Core-core repulsion = 25184.282810 eV Total energy + Delta-G solvation = -3977.805725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.75023 -39.81594 -37.66522 -36.82457 -36.35362 -33.70859 -33.22335 -31.74917 -30.06358 -29.53772 -27.49121 -26.69795 -26.25076 -25.21532 -23.50138 -21.50128 -21.36712 -20.60125 -20.23662 -19.73403 -18.12334 -17.28235 -17.05849 -16.87564 -16.40615 -16.06725 -15.44340 -14.74098 -14.42944 -14.32188 -14.10428 -13.77033 -13.64582 -13.54417 -13.09358 -12.99730 -12.94660 -12.80889 -12.51249 -12.40051 -12.28481 -11.96551 -11.69687 -11.29518 -11.25520 -11.10983 -11.10038 -10.86790 -10.83251 -10.62371 -10.60368 -10.43533 -10.12812 -10.05708 -9.77109 -9.64932 -9.32259 -8.50377 -8.09228 -7.86823 -6.61527 -5.90016 -3.44753 1.51436 1.85971 1.94597 2.25142 3.30533 3.36775 3.40237 3.82517 4.25805 4.40353 4.53592 4.79067 4.83743 4.92676 4.92923 4.97117 5.10804 5.19658 5.20384 5.25531 5.32467 5.48319 5.66318 5.73504 5.79268 5.85859 5.88663 5.95781 5.99448 6.03940 6.08236 6.14930 6.18869 6.27588 6.33005 6.43691 6.48776 6.59530 6.72960 6.92848 6.96790 7.00976 7.15115 7.20364 7.31241 7.50797 7.58981 7.73789 7.79039 8.40197 9.06085 9.68991 10.24393 11.09046 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015079 B = 0.003208 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.497661 B = 8726.144047 C = 9828.604080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.462 3.538 4 O -0.484 6.484 5 C 0.072 3.928 6 O -0.307 6.307 7 C 0.058 3.942 8 C -0.099 4.099 9 C -0.109 4.109 10 C -0.111 4.111 11 C -0.058 4.058 12 C 0.172 3.828 13 N -0.541 5.541 14 C -0.253 4.253 15 H 0.063 0.937 16 C 0.014 3.986 17 N -0.884 5.884 18 Si 0.894 3.106 19 H -0.288 1.288 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.128 3.872 23 C -0.195 4.195 24 C -0.225 4.225 25 C -0.092 4.092 26 C -0.096 4.096 27 C -0.112 4.112 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.117 0.883 37 H 0.037 0.963 38 H 0.111 0.889 39 H 0.258 0.742 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.125 0.875 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.185 -9.846 -5.529 18.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.277 6.277 3 C 0.304 3.696 4 O -0.369 6.369 5 C -0.004 4.004 6 O -0.224 6.224 7 C 0.015 3.985 8 C -0.099 4.099 9 C -0.166 4.166 10 C -0.130 4.130 11 C -0.061 4.061 12 C 0.046 3.954 13 N -0.255 5.255 14 C -0.383 4.383 15 H 0.080 0.920 16 C -0.186 4.186 17 N -0.526 5.526 18 Si 0.723 3.277 19 H -0.214 1.214 20 H -0.206 1.206 21 H -0.206 1.206 22 C 0.019 3.981 23 C -0.233 4.233 24 C -0.266 4.266 25 C -0.111 4.111 26 C -0.097 4.097 27 C -0.169 4.169 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.135 0.865 37 H 0.056 0.944 38 H 0.129 0.871 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.143 0.857 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.412 -9.532 -5.371 18.095 hybrid contribution -0.331 0.440 0.922 1.074 sum -14.744 -9.092 -4.449 17.884 Atomic orbital electron populations 1.23293 0.75774 1.03787 1.02776 1.86461 1.23756 1.32905 1.84564 1.23297 0.91412 0.81664 0.73273 1.90710 1.66729 1.36171 1.43337 1.21823 0.87671 0.86363 1.04496 1.86055 1.20665 1.21149 1.94560 1.18036 0.81617 1.06904 0.91967 1.20012 0.94048 1.01656 0.94201 1.20661 1.00403 1.01378 0.94137 1.20801 0.92433 1.01614 0.98186 1.21267 1.00403 0.92616 0.91812 1.20144 0.86909 0.85141 1.03206 1.43308 1.79272 1.02938 1.00010 1.18912 1.31629 1.00077 0.87633 0.91972 1.25097 0.95777 0.98777 0.98973 1.69930 1.26489 1.26035 1.30143 0.86497 0.78305 0.78624 0.84270 1.21415 1.20585 1.20604 1.21094 0.99630 0.87125 0.90237 1.23077 0.95985 1.02126 1.02149 1.23353 0.93187 1.09857 1.00197 1.20909 0.92114 0.99160 0.98911 1.20115 0.94159 1.01115 0.94277 1.20691 1.00326 1.01539 0.94304 0.91747 0.87868 0.91743 0.88785 0.88740 0.92040 0.91417 0.91579 0.86460 0.94445 0.87132 0.93206 0.89509 0.88330 0.90748 0.90968 0.89774 0.85693 0.91935 0.91335 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.61 10.57 -39.25 -0.41 -4.02 16 3 C 0.46 5.70 8.03 36.00 0.29 5.99 16 4 O -0.48 -7.61 16.25 -25.48 -0.41 -8.02 16 5 C 0.07 0.84 6.65 36.00 0.24 1.08 16 6 O -0.31 -4.77 7.68 -39.38 -0.30 -5.08 16 7 C 0.06 0.96 5.67 -39.21 -0.22 0.74 16 8 C -0.10 -1.59 5.89 -104.47 -0.62 -2.20 16 9 C -0.11 -1.41 9.79 36.01 0.35 -1.06 16 10 C -0.11 -1.93 9.35 -39.61 -0.37 -2.30 16 11 C -0.06 -1.14 5.46 -104.61 -0.57 -1.71 16 12 C 0.17 3.77 5.46 -5.19 -0.03 3.74 16 13 N -0.54 -12.75 2.78 -167.03 -0.46 -13.21 16 14 C -0.25 -6.54 8.19 -15.06 -0.12 -6.66 16 15 H 0.06 1.66 7.16 -52.49 -0.38 1.28 16 16 C 0.01 0.37 4.97 -17.43 -0.09 0.28 16 17 N -0.88 -23.78 11.32 55.49 0.63 -23.15 16 18 Si 0.89 20.74 29.60 -169.99 -5.03 15.71 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 C 0.13 2.68 6.60 -67.93 -0.45 2.23 16 23 C -0.19 -3.85 9.78 -26.73 -0.26 -4.12 16 24 C -0.23 -4.35 10.16 -26.73 -0.27 -4.62 16 25 C -0.09 -1.79 9.35 -39.61 -0.37 -2.16 16 26 C -0.10 -1.67 5.89 -104.47 -0.62 -2.29 16 27 C -0.11 -1.66 9.79 36.00 0.35 -1.31 16 28 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.91 7.53 -51.93 -0.39 0.52 16 35 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 36 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.04 0.77 7.99 -51.93 -0.41 0.36 16 38 H 0.11 2.73 5.30 -51.93 -0.28 2.45 16 39 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 40 H 0.09 1.66 8.11 -51.92 -0.42 1.24 16 41 H 0.10 2.16 6.80 -51.93 -0.35 1.80 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 45 H 0.13 2.60 8.06 -52.49 -0.42 2.18 16 46 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 48 H 0.07 1.00 7.53 -51.93 -0.39 0.61 16 LS Contribution 403.57 15.07 6.08 6.08 Total: -1.00 -29.95 403.57 -9.27 -39.23 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.67 Total: 5.52 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -1.69 Total: -13.04 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.16 Total: -36.37 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -1.13 Total: -17.13 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.95 -9.27 -39.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271156637.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.595 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds