Wall clock time and date at job start Tue Mar 31 2020 17:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 116.99775 * 2 1 4 4 O 1.20829 * 120.00036 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00176 * 180.02562 * 3 2 1 6 6 O 1.42894 * 109.47333 * 179.97438 * 5 3 2 7 7 C 1.35901 * 116.99882 * 179.97438 * 6 5 3 8 8 C 1.38738 * 120.05612 * 90.00463 * 7 6 5 9 9 C 1.50701 * 120.02327 * 359.95160 * 8 7 6 10 10 C 1.38145 * 119.94459 * 179.97438 * 8 7 6 11 11 C 1.38266 * 120.05487 * 359.97438 * 10 8 7 12 12 C 1.50697 * 119.94172 * 180.02562 * 11 10 8 13 13 N 1.46503 * 109.47151 * 90.00298 * 12 11 10 14 14 C 1.36935 * 119.99933 * 89.99795 * 13 12 11 15 15 H 1.07995 * 120.00327 * 215.48405 * 14 13 12 16 16 C 1.38812 * 119.99903 * 35.48883 * 14 13 12 17 17 N 1.31621 * 119.99963 * 21.46330 * 16 14 13 18 18 Si 1.86799 * 120.00227 * 201.46438 * 16 14 13 19 19 H 1.48503 * 109.47425 * 179.97438 * 18 16 14 20 20 H 1.48496 * 109.47182 * 300.00296 * 18 16 14 21 21 H 1.48504 * 109.47058 * 59.99787 * 18 16 14 22 22 C 1.46494 * 120.00147 * 270.00130 * 13 12 11 23 23 C 1.52996 * 117.50108 * 191.59780 * 22 13 12 24 24 C 1.53002 * 60.00155 * 252.50641 * 23 22 13 25 25 C 1.38258 * 120.11388 * 0.28109 * 11 10 8 26 26 C 1.38151 * 120.05660 * 359.44703 * 25 11 10 27 27 C 1.50693 * 120.03028 * 180.27683 * 26 25 11 28 28 H 1.09002 * 109.47047 * 60.00219 * 1 2 3 29 29 H 1.09003 * 109.46862 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47331 * 299.99961 * 1 2 3 31 31 H 1.09000 * 109.46995 * 59.99225 * 5 3 2 32 32 H 1.09004 * 109.46926 * 300.00043 * 5 3 2 33 33 H 1.08998 * 109.47460 * 270.02354 * 9 8 7 34 34 H 1.09002 * 109.47217 * 30.02955 * 9 8 7 35 35 H 1.09004 * 109.46723 * 150.02277 * 9 8 7 36 36 H 1.07997 * 119.96832 * 180.02562 * 10 8 7 37 37 H 1.08999 * 109.47260 * 330.00311 * 12 11 10 38 38 H 1.09001 * 109.47504 * 210.00174 * 12 11 10 39 39 H 0.97001 * 120.00107 * 178.99916 * 17 16 14 40 40 H 1.09007 * 115.55095 * 337.30258 * 22 13 12 41 41 H 1.09003 * 117.49923 * 359.97438 * 23 22 13 42 42 H 1.09003 * 117.50057 * 145.01654 * 23 22 13 43 43 H 1.08992 * 117.50000 * 252.50780 * 24 23 22 44 44 H 1.08997 * 117.51251 * 107.47369 * 24 23 22 45 45 H 1.08001 * 119.97490 * 179.70230 * 25 11 10 46 46 H 1.09005 * 109.47395 * 270.27387 * 27 26 25 47 47 H 1.09006 * 109.47638 * 30.27297 * 27 26 25 48 48 H 1.09004 * 109.47470 * 150.27046 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 8 3.9714 2.6453 -0.0011 7 6 5.3075 2.8936 -0.0011 8 6 5.9907 3.0203 -1.2019 9 6 5.2519 2.8814 -2.5081 10 6 7.3488 3.2732 -1.1993 11 6 8.0271 3.4008 -0.0012 12 6 9.5084 3.6773 -0.0012 13 7 9.7350 5.1247 -0.0022 14 6 9.8408 5.8019 1.1832 15 1 9.4482 6.8043 1.2694 16 6 10.4527 5.2001 2.2742 17 7 11.2862 4.1980 2.0912 18 14 10.0934 5.8123 4.0020 19 1 10.8659 5.0083 4.9829 20 1 10.4861 7.2401 4.1129 21 1 8.6418 5.6750 4.2839 22 6 9.8484 5.8475 -1.2714 23 6 10.3506 7.2917 -1.2194 24 6 8.8772 7.0044 -1.5148 25 6 7.3495 3.2698 1.1969 26 6 5.9904 3.0223 1.1997 27 6 5.2513 2.8859 2.5059 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.9556 0.7809 -0.8908 32 1 3.9563 0.7807 0.8892 33 1 5.2619 1.8377 -2.8221 34 1 4.2213 3.2124 -2.3796 35 1 5.7381 3.4940 -3.2673 36 1 7.8809 3.3723 -2.1338 37 1 9.9600 3.2383 -0.8909 38 1 9.9599 3.2395 0.8891 39 1 11.7250 3.7868 2.8524 40 1 10.1382 5.2442 -2.1318 41 1 10.5963 7.7043 -0.2408 42 1 10.9712 7.6389 -2.0456 43 1 8.5283 7.1625 -2.5352 44 1 8.1537 7.2274 -0.7306 45 1 7.8825 3.3650 2.1314 46 1 5.2614 1.8427 2.8218 47 1 5.7373 3.4998 3.2643 48 1 4.2207 3.2165 2.3766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271156637.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:27 Heat of formation + Delta-G solvation = -64.032143 kcal Electronic energy + Delta-G solvation = -29162.661364 eV Core-core repulsion = 25184.282810 eV Total energy + Delta-G solvation = -3978.378554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.73804 -41.02676 -39.10237 -38.16382 -37.42657 -35.40941 -34.47829 -33.39418 -31.52107 -30.63608 -28.46133 -27.91378 -27.51361 -26.77051 -25.16348 -22.94290 -22.42296 -21.94570 -21.68739 -21.35808 -19.16627 -18.33164 -18.26598 -18.03049 -17.84505 -17.40058 -16.99843 -16.25446 -15.82742 -15.67810 -15.40979 -15.19208 -14.87621 -14.72697 -14.43376 -14.07251 -14.03363 -13.88536 -13.83707 -13.66648 -13.58455 -13.12128 -13.00324 -12.88800 -12.81604 -12.70675 -12.48035 -12.26150 -12.15310 -12.08730 -11.91568 -11.87458 -11.77215 -11.54579 -11.36834 -10.95736 -10.92220 -10.41492 -9.42262 -9.24591 -8.49241 -7.83734 -5.43047 0.24276 0.49892 1.01389 1.31765 1.41703 1.45000 1.50906 2.45098 2.62650 3.02352 3.15206 3.47127 3.65051 3.69347 3.88850 3.92417 4.06357 4.12790 4.15056 4.29093 4.30711 4.31960 4.46679 4.50027 4.51742 4.54866 4.64480 4.65725 4.69962 4.71268 4.78564 4.83790 4.93664 4.95431 5.02427 5.07737 5.17341 5.21646 5.35290 5.39012 5.54523 5.56867 5.61155 5.61842 5.71364 5.87878 5.99035 6.45027 6.51240 6.63996 7.13909 7.83922 8.33424 9.10172 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015079 B = 0.003208 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.497661 B = 8726.144047 C = 9828.604080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.470 3.530 4 O -0.525 6.525 5 C 0.067 3.933 6 O -0.323 6.323 7 C 0.065 3.935 8 C -0.096 4.096 9 C -0.105 4.105 10 C -0.110 4.110 11 C -0.074 4.074 12 C 0.177 3.823 13 N -0.557 5.557 14 C -0.253 4.253 15 H 0.046 0.954 16 C -0.024 4.024 17 N -0.908 5.908 18 Si 0.941 3.059 19 H -0.287 1.287 20 H -0.280 1.280 21 H -0.281 1.281 22 C 0.108 3.892 23 C -0.194 4.194 24 C -0.206 4.206 25 C -0.112 4.112 26 C -0.103 4.103 27 C -0.108 4.108 28 H 0.063 0.937 29 H 0.138 0.862 30 H 0.061 0.939 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.133 0.867 37 H 0.046 0.954 38 H 0.080 0.920 39 H 0.254 0.746 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.058 0.942 45 H 0.099 0.901 46 H 0.087 0.913 47 H 0.059 0.941 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.979 -11.003 -7.346 20.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.313 3.687 4 O -0.414 6.414 5 C -0.008 4.008 6 O -0.241 6.241 7 C 0.022 3.978 8 C -0.096 4.096 9 C -0.161 4.161 10 C -0.129 4.129 11 C -0.077 4.077 12 C 0.052 3.948 13 N -0.273 5.273 14 C -0.383 4.383 15 H 0.064 0.936 16 C -0.221 4.221 17 N -0.552 5.552 18 Si 0.769 3.231 19 H -0.213 1.213 20 H -0.206 1.206 21 H -0.207 1.207 22 C 0.000 4.000 23 C -0.232 4.232 24 C -0.247 4.247 25 C -0.131 4.131 26 C -0.104 4.104 27 C -0.164 4.164 28 H 0.082 0.918 29 H 0.156 0.844 30 H 0.080 0.920 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.151 0.849 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.127 0.873 41 H 0.088 0.912 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.077 0.923 45 H 0.117 0.883 46 H 0.105 0.895 47 H 0.078 0.922 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.226 -10.710 -7.200 20.732 hybrid contribution 0.069 0.721 1.420 1.594 sum -16.157 -9.989 -5.780 19.856 Atomic orbital electron populations 1.23624 0.74018 1.06062 1.02674 1.86459 1.25413 1.31450 1.83848 1.23392 0.91560 0.81671 0.72098 1.90702 1.67594 1.37552 1.45520 1.22076 0.87500 0.84508 1.06699 1.85985 1.19668 1.23717 1.94684 1.18080 0.82025 1.05867 0.91807 1.20335 0.93653 1.00067 0.95585 1.20705 0.99583 1.03355 0.92487 1.20889 0.93101 1.01197 0.97700 1.21020 0.99065 0.94607 0.92978 1.19947 0.88574 0.84307 1.01997 1.43454 1.79990 1.03495 1.00312 1.18888 1.30818 0.99623 0.89019 0.93619 1.25560 0.96030 0.99283 1.01273 1.70028 1.27610 1.27135 1.30404 0.85762 0.77853 0.78012 0.81457 1.21261 1.20596 1.20741 1.21376 1.01045 0.87719 0.89838 1.23074 0.97007 1.01311 1.01833 1.23260 0.92233 1.08132 1.01049 1.20757 0.93221 1.01163 0.97954 1.20289 0.93428 1.00751 0.95891 1.20691 0.99753 1.02992 0.92992 0.91791 0.84406 0.92009 0.86177 0.86815 0.89375 0.91829 0.90432 0.84869 0.93598 0.90213 0.93613 0.87340 0.91169 0.87745 0.87735 0.92285 0.88304 0.89471 0.92215 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.54 16 2 O -0.36 -6.22 10.57 -51.38 -0.54 -6.76 16 3 C 0.47 10.60 8.03 71.23 0.57 11.18 16 4 O -0.53 -15.90 16.25 28.39 0.46 -15.44 16 5 C 0.07 1.38 6.65 71.23 0.47 1.85 16 6 O -0.32 -9.38 7.68 -73.35 -0.56 -9.94 16 7 C 0.07 2.07 5.67 22.51 0.13 2.20 16 8 C -0.10 -2.87 5.89 -19.77 -0.12 -2.98 16 9 C -0.10 -2.35 9.79 71.24 0.70 -1.65 16 10 C -0.11 -3.66 9.35 22.25 0.21 -3.45 16 11 C -0.07 -2.94 5.46 -19.85 -0.11 -3.05 16 12 C 0.18 7.97 5.46 85.63 0.47 8.44 16 13 N -0.56 -26.73 2.78 -682.35 -1.90 -28.63 16 14 C -0.25 -13.53 8.19 84.03 0.69 -12.84 16 15 H 0.05 2.55 7.16 -2.91 -0.02 2.53 16 16 C -0.02 -1.27 4.97 84.86 0.42 -0.84 16 17 N -0.91 -50.64 11.32 21.65 0.25 -50.40 16 18 Si 0.94 44.04 29.60 68.60 2.03 46.07 16 19 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 22 C 0.11 4.43 6.60 44.99 0.30 4.73 16 23 C -0.19 -7.50 9.78 30.59 0.30 -7.20 16 24 C -0.21 -7.68 10.16 30.60 0.31 -7.37 16 25 C -0.11 -4.49 9.35 22.25 0.21 -4.28 16 26 C -0.10 -3.54 5.89 -19.77 -0.12 -3.66 16 27 C -0.11 -3.13 9.79 71.23 0.70 -2.43 16 28 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 29 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.79 8.13 -2.38 -0.02 0.77 16 31 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 1.51 7.53 -2.39 -0.02 1.49 16 35 H 0.08 1.58 8.09 -2.39 -0.02 1.56 16 36 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 37 H 0.05 1.91 7.99 -2.39 -0.02 1.89 16 38 H 0.08 4.12 5.30 -2.39 -0.01 4.11 16 39 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 40 H 0.11 3.93 8.11 -2.38 -0.02 3.91 16 41 H 0.07 3.12 6.80 -2.39 -0.02 3.11 16 42 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 43 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 44 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 46 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 47 H 0.06 1.82 8.09 -2.38 -0.02 1.80 16 48 H 0.07 1.99 7.53 -2.38 -0.02 1.97 16 Total: -1.00 -66.92 403.57 7.01 -59.91 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.95 Total: 25.00 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: 6.33 Total: -19.82 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -1.65 Total: -79.03 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.65 Total: -32.14 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -66.92 7.01 -59.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271156637.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.122 kcal (2) G-P(sol) polarization free energy of solvation -66.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds