Wall clock time and date at job start Tue Mar 31 2020 17:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42907 * 113.99997 * 2 1 4 4 C 1.52989 * 109.45059 * 60.02938 * 3 2 1 5 5 C 1.53036 * 109.45806 * 179.97438 * 3 2 1 6 6 C 1.53189 * 109.31669 * 58.65419 * 5 3 2 7 7 N 1.46931 * 108.77611 * 54.63148 * 6 5 3 8 8 C 1.34776 * 120.62735 * 126.37122 * 7 6 5 9 9 O 1.21280 * 120.00295 * 0.02562 * 8 7 6 10 10 C 1.50705 * 119.99599 * 180.27876 * 8 7 6 11 11 C 1.50702 * 109.46931 * 179.72346 * 10 8 7 12 12 C 1.38302 * 119.93155 * 269.72242 * 11 10 8 13 13 C 1.38102 * 120.06708 * 179.72540 * 12 11 10 14 14 C 1.38875 * 119.93171 * 0.57444 * 13 12 11 15 15 O 1.35749 * 120.06955 * 179.68162 * 14 13 12 16 16 C 1.34827 * 116.99954 * 174.48319 * 15 14 13 17 17 H 1.07997 * 120.00174 * 5.05756 * 16 15 14 18 18 C 1.38653 * 120.00116 * 185.05679 * 16 15 14 19 19 N 1.31565 * 119.99777 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00382 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47148 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46705 * 119.99780 * 20 18 16 23 23 H 1.48493 * 109.47324 * 239.99799 * 20 18 16 24 24 C 1.38877 * 119.86014 * 359.69813 * 14 13 12 25 25 C 1.38099 * 119.93350 * 0.02562 * 24 14 13 26 26 C 1.46923 * 118.73844 * 306.64752 * 7 6 5 27 27 C 1.52759 * 109.00829 * 53.30715 * 26 7 6 28 28 H 1.09001 * 109.47010 * 60.00554 * 1 2 3 29 29 H 1.09007 * 109.47219 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47691 * 300.00386 * 1 2 3 31 31 H 1.09003 * 109.47407 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.47484 * 299.96956 * 4 3 2 33 33 H 1.08998 * 109.47475 * 59.96862 * 4 3 2 34 34 H 1.08998 * 109.49981 * 298.69974 * 5 3 2 35 35 H 1.09010 * 109.52465 * 178.62253 * 5 3 2 36 36 H 1.09002 * 109.58715 * 294.84290 * 6 5 3 37 37 H 1.09002 * 109.70469 * 174.48864 * 6 5 3 38 38 H 1.08998 * 109.46758 * 299.72148 * 10 8 7 39 39 H 1.08994 * 109.47614 * 59.72236 * 10 8 7 40 40 H 1.07997 * 119.96127 * 359.97438 * 12 11 10 41 41 H 1.08002 * 120.02890 * 180.27053 * 13 12 11 42 42 H 0.96997 * 119.99911 * 180.02562 * 19 18 16 43 43 H 1.08009 * 120.03355 * 179.97438 * 24 14 13 44 44 H 1.07998 * 119.96402 * 179.97438 * 25 24 14 45 45 H 1.08997 * 109.58668 * 173.14475 * 26 7 6 46 46 H 1.08999 * 109.58436 * 293.56817 * 26 7 6 47 47 H 1.09001 * 109.56229 * 185.55416 * 27 26 7 48 48 H 1.09001 * 109.38840 * 65.51474 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5590 2.0640 1.2497 5 6 3.5357 1.1843 0.0006 6 6 3.9818 0.3943 -1.2337 7 7 3.4281 1.0381 -2.4328 8 6 4.2323 1.3958 -3.4535 9 8 5.4251 1.1865 -3.3877 10 6 3.6501 2.0609 -4.6740 11 6 4.7527 2.3621 -5.6561 12 6 5.4136 3.5757 -5.6007 13 6 6.4284 3.8524 -6.4957 14 6 6.7769 2.9153 -7.4595 15 8 7.7696 3.1870 -8.3448 16 6 8.1349 2.1927 -9.1789 17 1 7.5893 1.2607 -9.1797 18 6 9.2111 2.3668 -10.0356 19 7 9.8760 3.5020 -10.0343 20 14 9.7169 0.9895 -11.1918 21 1 8.8146 -0.1742 -11.0000 22 1 9.6222 1.4625 -12.5963 23 1 11.1155 0.5858 -10.8987 24 6 6.1075 1.6999 -7.5161 25 6 5.0975 1.4268 -6.6147 26 6 1.9820 1.2901 -2.4953 27 6 1.5576 2.0650 -1.2492 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.0026 3.0598 1.2503 32 1 0.4725 2.1504 1.2499 33 1 1.8805 1.5225 2.1393 34 1 3.8590 0.6638 0.9021 35 1 3.9803 2.1794 -0.0241 36 1 3.6133 -0.6292 -1.1653 37 1 5.0702 0.3876 -1.2921 38 1 2.9221 1.3954 -5.1379 39 1 3.1594 2.9895 -4.3826 40 1 5.1385 4.3061 -4.8543 41 1 6.9470 4.7986 -6.4491 42 1 10.6286 3.6240 -10.6339 43 1 6.3760 0.9692 -8.2648 44 1 4.5764 0.4819 -6.6585 45 1 1.7514 1.8763 -3.3848 46 1 1.4470 0.3411 -2.5319 47 1 0.4729 2.1713 -1.2373 48 1 2.0198 3.0521 -1.2621 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271663114.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:54 Heat of formation + Delta-G solvation = -81.769216 kcal Electronic energy + Delta-G solvation = -28522.769513 eV Core-core repulsion = 24543.621822 eV Total energy + Delta-G solvation = -3979.147691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.71550 -39.32341 -38.62200 -36.56797 -35.92626 -33.22663 -32.42716 -31.82865 -30.94612 -30.08245 -28.80038 -27.30303 -26.46226 -25.09025 -23.76900 -23.22263 -21.90512 -21.01254 -20.26355 -19.04871 -17.91802 -17.23364 -16.90946 -16.28634 -15.95559 -15.90071 -15.70305 -15.36043 -14.69434 -14.51512 -14.18760 -14.01457 -13.77768 -13.64696 -13.52496 -13.46075 -13.25847 -12.94366 -12.72734 -12.63884 -12.50747 -12.26965 -12.22862 -11.80692 -11.70408 -11.56759 -11.43307 -11.26290 -11.19132 -10.79172 -10.70255 -10.60054 -10.53702 -10.37289 -9.93813 -9.57624 -9.25868 -8.76634 -8.67743 -8.08138 -7.09426 -6.39217 -3.97543 2.31313 2.32824 2.80983 3.01116 3.16688 3.18392 3.23575 3.36475 4.01937 4.20408 4.27155 4.42882 4.54709 4.70583 4.84995 4.90748 4.92541 4.98383 5.09393 5.10590 5.14312 5.15527 5.21386 5.26701 5.32364 5.35091 5.37563 5.39207 5.42242 5.60409 5.63836 5.69488 5.72188 5.77982 5.81246 5.91008 5.95310 6.28211 6.46629 6.48599 6.77029 6.83145 6.98286 7.12209 7.30628 7.41679 7.44225 7.51680 7.90811 8.06466 8.35880 9.06762 9.77900 10.79114 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031182 B = 0.002059 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.731248 B =13598.834918 C =13778.056633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.374 6.374 3 C 0.115 3.885 4 C -0.178 4.178 5 C -0.118 4.118 6 C 0.115 3.885 7 N -0.620 5.620 8 C 0.512 3.488 9 O -0.520 6.520 10 C -0.079 4.079 11 C -0.169 4.169 12 C -0.060 4.060 13 C -0.191 4.191 14 C 0.156 3.844 15 O -0.179 6.179 16 C -0.389 4.389 17 H 0.092 0.908 18 C 0.037 3.963 19 N -0.864 5.864 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.232 4.232 25 C -0.056 4.056 26 C 0.114 3.886 27 C -0.162 4.162 28 H 0.044 0.956 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.269 0.731 43 H 0.126 0.874 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.522 -4.221 20.397 29.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.293 6.293 3 C 0.075 3.925 4 C -0.235 4.235 5 C -0.156 4.156 6 C -0.007 4.007 7 N -0.356 5.356 8 C 0.301 3.699 9 O -0.394 6.394 10 C -0.118 4.118 11 C -0.170 4.170 12 C -0.078 4.078 13 C -0.210 4.210 14 C 0.103 3.897 15 O -0.083 6.083 16 C -0.466 4.466 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.499 5.499 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.251 4.251 25 C -0.075 4.075 26 C -0.010 4.010 27 C -0.200 4.200 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.125 0.875 41 H 0.134 0.866 42 H 0.078 0.922 43 H 0.144 0.856 44 H 0.121 0.879 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.397 -4.200 20.236 29.038 hybrid contribution -0.155 -0.493 -0.424 0.669 sum -20.551 -4.693 19.812 28.929 Atomic orbital electron populations 1.22788 0.81687 1.02648 1.00126 1.87987 1.19316 1.27078 1.94922 1.21463 0.93997 0.83357 0.93658 1.22407 1.01803 1.01109 0.98178 1.21925 0.92425 1.02040 0.99215 1.21447 1.00343 0.95976 0.82975 1.48165 1.07520 1.61717 1.18167 1.21044 0.86751 0.78192 0.83962 1.90734 1.15210 1.53597 1.79885 1.20436 0.97868 1.00884 0.92639 1.18653 1.02033 0.96450 0.99889 1.20383 0.94812 0.95672 0.96956 1.20147 1.02236 1.00441 0.98219 1.19374 0.88700 0.92624 0.89034 1.83975 1.44857 1.38571 1.40869 1.21374 1.14458 0.94910 1.15828 0.89047 1.25290 0.95270 0.98037 0.98039 1.70055 1.19361 1.23708 1.36797 0.85646 0.78848 0.79674 0.79249 1.19119 1.20205 1.20167 1.21106 1.00971 0.99115 1.03909 1.20503 0.96002 0.96927 0.94050 1.21497 0.81113 1.00269 0.98089 1.22470 1.01851 1.00289 0.95421 0.93754 0.89781 0.93899 0.91345 0.92104 0.91597 0.90054 0.90118 0.91067 0.88960 0.89152 0.89161 0.87481 0.86575 0.92152 0.85596 0.87865 0.89438 0.91150 0.90334 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 10.21 101.05 1.03 1.16 16 2 O -0.37 -3.01 9.08 -35.23 -0.32 -3.33 16 3 C 0.11 0.81 0.71 -90.59 -0.06 0.75 16 4 C -0.18 -1.00 8.25 37.15 0.31 -0.69 16 5 C -0.12 -0.98 5.11 -26.62 -0.14 -1.11 16 6 C 0.12 1.24 6.20 -3.71 -0.02 1.22 16 7 N -0.62 -6.97 2.98 -173.03 -0.52 -7.48 16 8 C 0.51 7.55 7.69 -10.98 -0.08 7.47 16 9 O -0.52 -10.22 15.45 5.56 0.09 -10.13 16 10 C -0.08 -1.03 4.18 -29.03 -0.12 -1.16 16 11 C -0.17 -3.04 4.38 -104.57 -0.46 -3.50 16 12 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 13 C -0.19 -4.28 9.99 -39.40 -0.39 -4.67 16 14 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 15 O -0.18 -5.30 9.76 0.06 0.00 -5.30 16 16 C -0.39 -11.24 9.49 30.89 0.29 -10.95 16 17 H 0.09 2.46 5.20 -52.49 -0.27 2.19 16 18 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 19 N -0.86 -25.96 13.67 55.48 0.76 -25.20 16 20 Si 0.94 21.14 29.55 -169.99 -5.02 16.11 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 C -0.23 -5.33 9.17 -39.40 -0.36 -5.69 16 25 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 26 C 0.11 0.89 6.08 -3.94 -0.02 0.87 16 27 C -0.16 -1.04 4.46 -26.83 -0.12 -1.16 16 28 H 0.04 0.20 6.44 -51.93 -0.33 -0.14 16 29 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.04 0.19 6.42 -51.93 -0.33 -0.14 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.29 6.54 -51.93 -0.34 -0.05 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.68 8.14 -51.92 -0.42 0.25 16 36 H 0.07 0.76 7.81 -51.93 -0.41 0.36 16 37 H 0.09 1.17 7.00 -51.93 -0.36 0.81 16 38 H 0.09 0.99 7.90 -51.93 -0.41 0.58 16 39 H 0.09 0.95 7.62 -51.93 -0.40 0.56 16 40 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 41 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 42 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.13 2.89 5.64 -52.48 -0.30 2.60 16 44 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 45 H 0.09 0.58 5.93 -51.93 -0.31 0.27 16 46 H 0.07 0.54 7.81 -51.93 -0.41 0.13 16 47 H 0.08 0.38 6.61 -51.93 -0.34 0.03 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 381.50 15.07 5.75 5.75 Total: -1.00 -35.06 381.50 -7.69 -42.76 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.15 Total: 2.64 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -1.28 Total: -15.81 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.24 Total: -32.69 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.23 Total: -18.76 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.06 -7.69 -42.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271663114.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.013 kcal (2) G-P(sol) polarization free energy of solvation -35.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds