Wall clock time and date at job start Tue Mar 31 2020 17:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99853 * 2 1 4 4 C 1.52995 * 109.46040 * 299.97092 * 3 2 1 5 5 C 1.53040 * 109.45887 * 179.97438 * 3 2 1 6 6 C 1.53194 * 109.31550 * 178.61384 * 5 3 2 7 7 N 1.46925 * 108.77521 * 54.63412 * 6 5 3 8 8 C 1.34781 * 120.63460 * 126.37078 * 7 6 5 9 9 O 1.21279 * 119.99460 * 0.02562 * 8 7 6 10 10 C 1.50694 * 120.00176 * 180.02562 * 8 7 6 11 11 C 1.50698 * 109.47229 * 180.02562 * 10 8 7 12 12 C 1.38317 * 119.96857 * 89.99420 * 11 10 8 13 13 C 1.38281 * 120.14162 * 179.74759 * 12 11 10 14 14 C 1.38120 * 120.06679 * 0.25682 * 13 12 11 15 15 C 1.38861 * 119.93162 * 0.02562 * 14 13 12 16 16 O 1.35753 * 120.06897 * 180.02562 * 15 14 13 17 17 C 1.34827 * 116.99898 * 354.46351 * 16 15 14 18 18 H 1.07999 * 120.00241 * 5.05726 * 17 16 15 19 19 C 1.38655 * 119.99607 * 185.06429 * 17 16 15 20 20 N 1.31553 * 119.99805 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00276 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47312 * 90.00419 * 21 19 17 23 23 H 1.48503 * 109.47423 * 210.00351 * 21 19 17 24 24 H 1.48505 * 109.47165 * 330.00586 * 21 19 17 25 25 C 1.38082 * 119.96289 * 270.25705 * 11 10 8 26 26 C 1.46930 * 118.73620 * 306.64650 * 7 6 5 27 27 C 1.52758 * 109.00900 * 53.30817 * 26 7 6 28 28 H 1.09000 * 109.47180 * 60.00063 * 1 2 3 29 29 H 1.08993 * 109.47226 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47447 * 300.00263 * 1 2 3 31 31 H 1.09004 * 109.47412 * 300.02401 * 4 3 2 32 32 H 1.08994 * 109.47776 * 60.02971 * 4 3 2 33 33 H 1.09008 * 109.47490 * 180.02562 * 4 3 2 34 34 H 1.09002 * 109.50099 * 58.66231 * 5 3 2 35 35 H 1.09006 * 109.52642 * 298.57746 * 5 3 2 36 36 H 1.09001 * 109.58501 * 294.84989 * 6 5 3 37 37 H 1.08994 * 109.58956 * 174.42095 * 6 5 3 38 38 H 1.09003 * 109.47374 * 59.99685 * 10 8 7 39 39 H 1.09003 * 109.47330 * 300.00070 * 10 8 7 40 40 H 1.08001 * 119.93129 * 0.02995 * 12 11 10 41 41 H 1.07998 * 119.97092 * 180.27901 * 13 12 11 42 42 H 1.08004 * 120.03647 * 179.97438 * 14 13 12 43 43 H 0.97003 * 120.00217 * 180.02562 * 20 19 17 44 44 H 1.08001 * 120.03832 * 359.97438 * 25 11 10 45 45 H 1.09003 * 109.58343 * 173.14501 * 26 7 6 46 46 H 1.08997 * 109.58980 * 293.56590 * 26 7 6 47 47 H 1.09009 * 109.56371 * 185.55213 * 27 26 7 48 48 H 1.09004 * 109.38536 * 65.51699 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5591 2.0642 -1.2496 5 6 3.5358 1.1843 0.0006 6 6 4.1553 2.5850 -0.0343 7 7 3.6119 3.3704 1.0821 8 6 4.4353 3.9820 1.9565 9 8 5.6373 3.8871 1.8255 10 6 3.8625 4.7835 3.0968 11 6 4.9857 5.3593 3.9201 12 6 5.5027 6.6039 3.6091 13 6 6.5299 7.1379 4.3654 14 6 7.0464 6.4271 5.4311 15 6 6.5335 5.1747 5.7423 16 8 7.0387 4.4739 6.7894 17 6 8.1121 4.9972 7.4154 18 1 8.4810 5.9717 7.1313 19 6 8.7425 4.2841 8.4236 20 7 9.7896 4.7949 9.0347 21 14 8.1043 2.5988 8.9153 22 1 8.7771 1.5570 8.0984 23 1 8.3900 2.3613 10.3531 24 1 6.6385 2.5381 8.6852 25 6 5.5014 4.6414 4.9810 26 6 2.1536 3.4715 1.2308 27 6 1.5566 2.0656 1.2484 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8808 1.5228 -2.1394 32 1 0.4726 2.1507 -1.2499 33 1 2.0027 3.0600 -1.2501 34 1 3.8566 0.6227 -0.8767 35 1 3.8597 0.6658 0.9031 36 1 3.9070 3.0709 -0.9779 37 1 5.2379 2.5083 0.0658 38 1 3.2473 4.1369 3.7225 39 1 3.2509 5.5940 2.7001 40 1 5.1003 7.1619 2.7766 41 1 6.9284 8.1119 4.1229 42 1 7.8489 6.8444 6.0212 43 1 10.2309 4.2959 9.7399 44 1 5.0999 3.6679 5.2210 45 1 1.9161 3.9797 2.1655 46 1 1.7387 4.0312 0.3926 47 1 0.4686 2.1311 1.2592 48 1 1.8982 1.5386 2.1394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271678346.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:59 Heat of formation + Delta-G solvation = -76.974767 kcal Electronic energy + Delta-G solvation = -28742.693703 eV Core-core repulsion = 24763.753915 eV Total energy + Delta-G solvation = -3978.939789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.85412 -39.44616 -38.77609 -36.83633 -36.28947 -33.14369 -32.37168 -32.10863 -31.39726 -29.41241 -28.36232 -27.69686 -26.80984 -25.14166 -24.41296 -23.48556 -21.78042 -21.06492 -20.04224 -18.65391 -17.71340 -17.65959 -17.07460 -16.42549 -15.99413 -15.95666 -15.78096 -15.39550 -15.12579 -14.82141 -14.30648 -14.22566 -13.95599 -13.73938 -13.59411 -13.46076 -13.14734 -12.98680 -12.71331 -12.46928 -12.42622 -12.35398 -12.20605 -12.12181 -11.73907 -11.63534 -11.56639 -11.33508 -11.24658 -10.80378 -10.73149 -10.72094 -10.62111 -10.11703 -9.91580 -9.72642 -9.34111 -8.84448 -8.82161 -8.10205 -7.31007 -6.36163 -4.02734 2.04343 2.33142 2.66578 2.86067 3.25602 3.30232 3.34060 3.44011 4.17784 4.23747 4.28605 4.44365 4.49213 4.62604 4.73570 4.76339 4.83669 4.90720 4.92392 4.96722 5.03331 5.07507 5.12948 5.15847 5.24848 5.31835 5.33806 5.35376 5.42227 5.49476 5.57013 5.58027 5.70524 5.73056 5.77453 5.87987 5.94153 6.16235 6.29196 6.32777 6.57288 6.83171 6.83285 7.14149 7.24058 7.25695 7.36515 7.65445 7.85985 8.09584 8.20911 8.99483 9.62596 10.71731 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016055 B = 0.002584 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.590653 B =10831.592770 C =11906.320633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.379 6.379 3 C 0.116 3.884 4 C -0.183 4.183 5 C -0.120 4.120 6 C 0.114 3.886 7 N -0.622 5.622 8 C 0.517 3.483 9 O -0.516 6.516 10 C -0.093 4.093 11 C -0.036 4.036 12 C -0.188 4.188 13 C -0.076 4.076 14 C -0.217 4.217 15 C 0.160 3.840 16 O -0.219 6.219 17 C -0.388 4.388 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.882 5.882 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.260 1.260 25 C -0.174 4.174 26 C 0.110 3.890 27 C -0.162 4.162 28 H 0.044 0.956 29 H 0.084 0.916 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.132 0.868 43 H 0.279 0.721 44 H 0.113 0.887 45 H 0.091 0.909 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.448 -4.297 -20.089 29.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.298 6.298 3 C 0.077 3.923 4 C -0.240 4.240 5 C -0.158 4.158 6 C -0.008 4.008 7 N -0.358 5.358 8 C 0.306 3.694 9 O -0.389 6.389 10 C -0.132 4.132 11 C -0.036 4.036 12 C -0.207 4.207 13 C -0.094 4.094 14 C -0.237 4.237 15 C 0.109 3.891 16 O -0.125 6.125 17 C -0.463 4.463 18 H 0.123 0.877 19 C -0.140 4.140 20 N -0.520 5.520 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.193 4.193 26 C -0.013 4.013 27 C -0.201 4.201 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.150 0.850 43 H 0.089 0.911 44 H 0.131 0.869 45 H 0.110 0.890 46 H 0.090 0.910 47 H 0.098 0.902 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.549 -4.748 -19.862 28.971 hybrid contribution -0.413 -0.457 0.276 0.675 sum -20.963 -5.205 -19.586 29.157 Atomic orbital electron populations 1.22786 0.81564 1.02681 1.00157 1.87989 1.19500 1.27303 1.94978 1.21436 0.93929 0.83156 0.93815 1.22531 1.01815 1.01474 0.98186 1.21878 0.92189 0.97628 1.04123 1.21578 1.00601 0.89666 0.88969 1.48183 1.06277 1.52339 1.28993 1.20771 0.86808 0.79270 0.82573 1.90760 1.14666 1.60308 1.73186 1.20626 0.97929 0.99720 0.94973 1.18665 0.96020 0.94311 0.94643 1.20405 1.01313 0.96784 1.02165 1.20733 0.95530 0.98566 0.94597 1.21297 1.04774 0.96200 1.01390 1.19003 0.92438 0.90613 0.87091 1.83567 1.43520 1.46790 1.38609 1.20762 1.04232 1.04595 1.16758 0.87654 1.24451 0.94811 0.99352 0.95404 1.69647 1.19299 1.38861 1.24187 0.86189 0.80558 0.82774 0.77421 1.19894 1.20838 1.18415 1.19931 1.00559 1.00589 0.98222 1.21636 0.80031 0.96549 1.03113 1.22492 1.01286 0.96769 0.99544 0.93788 0.89775 0.93733 0.91570 0.92079 0.90837 0.89895 0.90472 0.91292 0.88231 0.88342 0.88348 0.87769 0.87175 0.84988 0.91132 0.86899 0.89031 0.91009 0.90209 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.21 101.05 1.03 1.18 16 2 O -0.38 -3.42 10.35 -35.23 -0.36 -3.79 16 3 C 0.12 0.89 0.88 -90.58 -0.08 0.81 16 4 C -0.18 -1.08 7.49 37.15 0.28 -0.80 16 5 C -0.12 -1.06 5.28 -26.61 -0.14 -1.20 16 6 C 0.11 1.09 5.97 -3.71 -0.02 1.07 16 7 N -0.62 -6.40 2.98 -173.03 -0.52 -6.92 16 8 C 0.52 7.29 7.69 -10.99 -0.08 7.20 16 9 O -0.52 -9.79 15.45 5.56 0.09 -9.71 16 10 C -0.09 -1.17 4.17 -29.04 -0.12 -1.29 16 11 C -0.04 -0.63 4.37 -104.65 -0.46 -1.09 16 12 C -0.19 -3.30 9.70 -39.54 -0.38 -3.68 16 13 C -0.08 -1.45 10.04 -39.61 -0.40 -1.85 16 14 C -0.22 -4.91 9.17 -39.39 -0.36 -5.27 16 15 C 0.16 3.88 6.65 -39.10 -0.26 3.62 16 16 O -0.22 -6.01 8.59 0.05 0.00 -6.01 16 17 C -0.39 -11.26 9.95 30.89 0.31 -10.95 16 18 H 0.11 3.12 5.44 -52.49 -0.29 2.83 16 19 C 0.06 1.80 5.49 -17.52 -0.10 1.71 16 20 N -0.88 -26.04 13.96 55.48 0.77 -25.27 16 21 Si 0.90 22.30 28.62 -169.99 -4.86 17.44 16 22 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.26 -6.40 7.11 56.52 0.40 -6.00 16 25 C -0.17 -3.62 9.65 -39.39 -0.38 -4.00 16 26 C 0.11 0.75 5.85 -3.93 -0.02 0.73 16 27 C -0.16 -1.12 4.70 -26.84 -0.13 -1.25 16 28 H 0.04 0.22 6.42 -51.93 -0.33 -0.12 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.23 6.38 -51.93 -0.33 -0.10 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.30 6.54 -51.93 -0.34 -0.04 16 33 H 0.07 0.41 4.99 -51.92 -0.26 0.15 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.54 6.69 -51.93 -0.35 0.19 16 37 H 0.10 1.17 7.00 -51.93 -0.36 0.81 16 38 H 0.10 1.05 7.63 -51.93 -0.40 0.65 16 39 H 0.10 0.94 7.89 -51.93 -0.41 0.53 16 40 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.13 3.10 5.64 -52.48 -0.30 2.81 16 43 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.11 2.22 8.06 -52.49 -0.42 1.80 16 45 H 0.09 0.53 5.93 -51.93 -0.31 0.22 16 46 H 0.07 0.38 6.70 -51.93 -0.35 0.03 16 47 H 0.08 0.41 6.47 -51.92 -0.34 0.08 16 48 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -34.34 375.43 -7.41 -41.76 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.87 Total: 1.90 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -1.32 Total: -15.07 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.26 Total: -32.18 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.28 Total: -19.50 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.86 Total: 17.44 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.34 -7.41 -41.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271678346.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.217 kcal (2) G-P(sol) polarization free energy of solvation -34.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds