Wall clock time and date at job start Tue Mar 31 2020 17:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99853 * 2 1 4 4 C 1.52995 * 109.46040 * 299.97092 * 3 2 1 5 5 C 1.53040 * 109.45887 * 179.97438 * 3 2 1 6 6 C 1.53194 * 109.31550 * 178.61384 * 5 3 2 7 7 N 1.46925 * 108.77521 * 54.63412 * 6 5 3 8 8 C 1.34781 * 120.63460 * 126.37078 * 7 6 5 9 9 O 1.21279 * 119.99460 * 0.02562 * 8 7 6 10 10 C 1.50694 * 120.00176 * 180.02562 * 8 7 6 11 11 C 1.50698 * 109.47229 * 180.02562 * 10 8 7 12 12 C 1.38317 * 119.96857 * 89.99420 * 11 10 8 13 13 C 1.38281 * 120.14162 * 179.74759 * 12 11 10 14 14 C 1.38120 * 120.06679 * 0.25682 * 13 12 11 15 15 C 1.38861 * 119.93162 * 0.02562 * 14 13 12 16 16 O 1.35753 * 120.06897 * 180.02562 * 15 14 13 17 17 C 1.34827 * 116.99898 * 354.46351 * 16 15 14 18 18 H 1.07999 * 120.00241 * 5.05726 * 17 16 15 19 19 C 1.38655 * 119.99607 * 185.06429 * 17 16 15 20 20 N 1.31553 * 119.99805 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00276 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47312 * 90.00419 * 21 19 17 23 23 H 1.48503 * 109.47423 * 210.00351 * 21 19 17 24 24 H 1.48505 * 109.47165 * 330.00586 * 21 19 17 25 25 C 1.38082 * 119.96289 * 270.25705 * 11 10 8 26 26 C 1.46930 * 118.73620 * 306.64650 * 7 6 5 27 27 C 1.52758 * 109.00900 * 53.30817 * 26 7 6 28 28 H 1.09000 * 109.47180 * 60.00063 * 1 2 3 29 29 H 1.08993 * 109.47226 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47447 * 300.00263 * 1 2 3 31 31 H 1.09004 * 109.47412 * 300.02401 * 4 3 2 32 32 H 1.08994 * 109.47776 * 60.02971 * 4 3 2 33 33 H 1.09008 * 109.47490 * 180.02562 * 4 3 2 34 34 H 1.09002 * 109.50099 * 58.66231 * 5 3 2 35 35 H 1.09006 * 109.52642 * 298.57746 * 5 3 2 36 36 H 1.09001 * 109.58501 * 294.84989 * 6 5 3 37 37 H 1.08994 * 109.58956 * 174.42095 * 6 5 3 38 38 H 1.09003 * 109.47374 * 59.99685 * 10 8 7 39 39 H 1.09003 * 109.47330 * 300.00070 * 10 8 7 40 40 H 1.08001 * 119.93129 * 0.02995 * 12 11 10 41 41 H 1.07998 * 119.97092 * 180.27901 * 13 12 11 42 42 H 1.08004 * 120.03647 * 179.97438 * 14 13 12 43 43 H 0.97003 * 120.00217 * 180.02562 * 20 19 17 44 44 H 1.08001 * 120.03832 * 359.97438 * 25 11 10 45 45 H 1.09003 * 109.58343 * 173.14501 * 26 7 6 46 46 H 1.08997 * 109.58980 * 293.56590 * 26 7 6 47 47 H 1.09009 * 109.56371 * 185.55213 * 27 26 7 48 48 H 1.09004 * 109.38536 * 65.51699 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5591 2.0642 -1.2496 5 6 3.5358 1.1843 0.0006 6 6 4.1553 2.5850 -0.0343 7 7 3.6119 3.3704 1.0821 8 6 4.4353 3.9820 1.9565 9 8 5.6373 3.8871 1.8255 10 6 3.8625 4.7835 3.0968 11 6 4.9857 5.3593 3.9201 12 6 5.5027 6.6039 3.6091 13 6 6.5299 7.1379 4.3654 14 6 7.0464 6.4271 5.4311 15 6 6.5335 5.1747 5.7423 16 8 7.0387 4.4739 6.7894 17 6 8.1121 4.9972 7.4154 18 1 8.4810 5.9717 7.1313 19 6 8.7425 4.2841 8.4236 20 7 9.7896 4.7949 9.0347 21 14 8.1043 2.5988 8.9153 22 1 8.7771 1.5570 8.0984 23 1 8.3900 2.3613 10.3531 24 1 6.6385 2.5381 8.6852 25 6 5.5014 4.6414 4.9810 26 6 2.1536 3.4715 1.2308 27 6 1.5566 2.0656 1.2484 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8808 1.5228 -2.1394 32 1 0.4726 2.1507 -1.2499 33 1 2.0027 3.0600 -1.2501 34 1 3.8566 0.6227 -0.8767 35 1 3.8597 0.6658 0.9031 36 1 3.9070 3.0709 -0.9779 37 1 5.2379 2.5083 0.0658 38 1 3.2473 4.1369 3.7225 39 1 3.2509 5.5940 2.7001 40 1 5.1003 7.1619 2.7766 41 1 6.9284 8.1119 4.1229 42 1 7.8489 6.8444 6.0212 43 1 10.2309 4.2959 9.7399 44 1 5.0999 3.6679 5.2210 45 1 1.9161 3.9797 2.1655 46 1 1.7387 4.0312 0.3926 47 1 0.4686 2.1311 1.2592 48 1 1.8982 1.5386 2.1394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271678346.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:58 Heat of formation + Delta-G solvation = -99.523281 kcal Electronic energy + Delta-G solvation = -28743.671480 eV Core-core repulsion = 24763.753915 eV Total energy + Delta-G solvation = -3979.917565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.67757 -40.87427 -39.93852 -38.34394 -37.26675 -34.49943 -34.06246 -33.18412 -32.19880 -31.07485 -29.10001 -28.50313 -27.66575 -27.14960 -25.10158 -24.26285 -23.33463 -22.52928 -21.08868 -19.68594 -19.38788 -18.77564 -18.52065 -17.15521 -16.95427 -16.90487 -16.75900 -16.41326 -16.37651 -16.02630 -15.71755 -15.64246 -15.09069 -14.99027 -14.89838 -14.45494 -14.29585 -14.17916 -13.98245 -13.84535 -13.54292 -13.19871 -13.07507 -12.94234 -12.81697 -12.69947 -12.53161 -12.43470 -12.34689 -12.29118 -12.17107 -11.93131 -11.88895 -11.32218 -11.21520 -10.94903 -10.83561 -10.42022 -9.68956 -9.66024 -9.06622 -8.51283 -6.23820 0.48039 0.69897 1.27993 1.33258 1.49075 1.64106 1.99736 2.26469 2.76070 2.80466 3.00637 3.15278 3.57740 3.66315 3.77404 3.91888 3.96644 4.04884 4.07211 4.25331 4.28234 4.31053 4.39686 4.47308 4.50295 4.53666 4.55448 4.58644 4.65259 4.67621 4.69719 4.80794 4.84583 4.87804 4.93692 4.96165 4.99555 5.12473 5.18185 5.24098 5.38725 5.41128 5.55481 5.64584 5.72246 5.76248 5.90956 6.23528 6.33251 6.38793 6.83121 7.21028 7.58340 8.60621 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016055 B = 0.002584 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.590653 B =10831.592770 C =11906.320633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.407 6.407 3 C 0.113 3.887 4 C -0.178 4.178 5 C -0.117 4.117 6 C 0.115 3.885 7 N -0.612 5.612 8 C 0.514 3.486 9 O -0.579 6.579 10 C -0.089 4.089 11 C -0.028 4.028 12 C -0.169 4.169 13 C -0.078 4.078 14 C -0.241 4.241 15 C 0.118 3.882 16 O -0.248 6.248 17 C -0.399 4.399 18 H 0.080 0.920 19 C 0.009 3.991 20 N -0.924 5.924 21 Si 0.970 3.030 22 H -0.270 1.270 23 H -0.263 1.263 24 H -0.262 1.262 25 C -0.182 4.182 26 C 0.103 3.897 27 C -0.160 4.160 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.123 0.877 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.141 0.859 42 H 0.107 0.893 43 H 0.285 0.715 44 H 0.118 0.882 45 H 0.111 0.889 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.724 -3.979 -22.743 34.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.326 6.326 3 C 0.074 3.926 4 C -0.235 4.235 5 C -0.156 4.156 6 C -0.007 4.007 7 N -0.346 5.346 8 C 0.304 3.696 9 O -0.458 6.458 10 C -0.128 4.128 11 C -0.028 4.028 12 C -0.188 4.188 13 C -0.096 4.096 14 C -0.260 4.260 15 C 0.070 3.930 16 O -0.156 6.156 17 C -0.476 4.476 18 H 0.098 0.902 19 C -0.189 4.189 20 N -0.565 5.565 21 Si 0.792 3.208 22 H -0.195 1.195 23 H -0.187 1.187 24 H -0.187 1.187 25 C -0.201 4.201 26 C -0.018 4.018 27 C -0.198 4.198 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.141 0.859 39 H 0.163 0.837 40 H 0.167 0.833 41 H 0.159 0.841 42 H 0.125 0.875 43 H 0.094 0.906 44 H 0.136 0.864 45 H 0.129 0.871 46 H 0.119 0.881 47 H 0.123 0.877 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.904 -4.420 -22.562 33.894 hybrid contribution 0.720 -0.467 0.782 1.161 sum -24.184 -4.887 -21.780 32.911 Atomic orbital electron populations 1.22954 0.80045 1.03443 1.01259 1.87952 1.21267 1.28209 1.95221 1.21472 0.92608 0.83210 0.95293 1.22488 1.02843 1.01322 0.96826 1.21815 0.93846 0.96908 1.03009 1.21593 0.99044 0.90295 0.89799 1.48228 1.07707 1.50732 1.27902 1.20993 0.86230 0.79334 0.83076 1.90754 1.17287 1.62908 1.74849 1.20752 0.96448 1.01438 0.94192 1.19225 0.96407 0.93915 0.93294 1.21011 0.99336 0.96586 1.01830 1.21122 0.95670 0.99546 0.93213 1.21327 1.05078 0.96577 1.03001 1.19591 0.94126 0.91606 0.87721 1.83505 1.43700 1.47752 1.40595 1.20717 1.05282 1.04079 1.17487 0.90222 1.25274 0.95087 1.03150 0.95378 1.69727 1.20749 1.40620 1.25358 0.85233 0.79564 0.77993 0.77996 1.19509 1.18730 1.18670 1.20259 0.99788 1.01247 0.98809 1.22004 0.77409 0.97001 1.05417 1.22476 1.02735 0.96395 0.98183 0.92386 0.89415 0.92771 0.91936 0.90526 0.90038 0.89508 0.93129 0.88739 0.91163 0.85857 0.83668 0.83254 0.84093 0.87501 0.90562 0.86356 0.87122 0.88116 0.87750 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.21 113.37 1.16 1.33 16 2 O -0.41 -6.59 10.35 -148.98 -1.54 -8.13 16 3 C 0.11 1.44 0.88 -10.77 -0.01 1.43 16 4 C -0.18 -1.41 7.49 71.98 0.54 -0.87 16 5 C -0.12 -1.96 5.28 30.67 0.16 -1.80 16 6 C 0.12 2.02 5.97 86.36 0.52 2.54 16 7 N -0.61 -10.71 2.98 -819.74 -2.44 -13.15 16 8 C 0.51 13.09 7.69 87.65 0.67 13.77 16 9 O -0.58 -21.63 15.45 -3.03 -0.05 -21.68 16 10 C -0.09 -1.84 4.17 29.10 0.12 -1.72 16 11 C -0.03 -0.90 4.37 -19.88 -0.09 -0.99 16 12 C -0.17 -5.34 9.70 22.30 0.22 -5.12 16 13 C -0.08 -2.85 10.04 22.25 0.22 -2.63 16 14 C -0.24 -11.34 9.17 22.39 0.21 -11.13 16 15 C 0.12 5.95 6.65 22.58 0.15 6.10 16 16 O -0.25 -14.30 8.59 -22.75 -0.20 -14.50 16 17 C -0.40 -24.73 9.95 67.92 0.68 -24.06 16 18 H 0.08 5.16 5.44 -2.91 -0.02 5.14 16 19 C 0.01 0.56 5.49 84.83 0.47 1.02 16 20 N -0.92 -57.06 13.96 21.61 0.30 -56.76 16 21 Si 0.97 47.51 28.62 68.60 1.96 49.48 16 22 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 23 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.26 -12.79 7.11 99.48 0.71 -12.08 16 25 C -0.18 -7.56 9.65 22.39 0.22 -7.34 16 26 C 0.10 0.91 5.85 86.22 0.50 1.41 16 27 C -0.16 -1.63 4.70 30.53 0.14 -1.48 16 28 H 0.06 0.36 6.42 -2.39 -0.02 0.35 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.38 6.38 -2.39 -0.02 0.37 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.08 0.39 6.54 -2.39 -0.02 0.38 16 33 H 0.08 0.51 4.99 -2.38 -0.01 0.50 16 34 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.05 1.09 8.14 -2.38 -0.02 1.08 16 36 H 0.09 1.19 6.69 -2.39 -0.02 1.18 16 37 H 0.07 1.68 7.00 -2.39 -0.02 1.66 16 38 H 0.12 2.02 7.63 -2.39 -0.02 2.00 16 39 H 0.15 1.71 7.89 -2.39 -0.02 1.69 16 40 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 41 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 42 H 0.11 5.49 5.64 -2.91 -0.02 5.47 16 43 H 0.28 16.09 8.31 -92.71 -0.77 15.32 16 44 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 45 H 0.11 0.60 5.93 -2.39 -0.01 0.59 16 46 H 0.10 0.42 6.70 -2.39 -0.02 0.41 16 47 H 0.10 0.59 6.47 -2.38 -0.02 0.57 16 48 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -82.21 375.43 4.89 -77.32 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.98 Total: 16.97 kcal Atomic # 6 Polarization: -35.42 SS G_CDS: 5.87 Total: -29.54 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: -2.14 Total: -69.91 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -1.78 Total: -44.30 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 1.96 Total: 49.48 kcal Total: -82.21 4.89 -77.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271678346.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.207 kcal (2) G-P(sol) polarization free energy of solvation -82.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds