Wall clock time and date at job start Tue Mar 31 2020 18:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47093 * 2 1 4 4 C 1.50705 * 109.54345 * 62.55945 * 3 2 1 5 5 O 1.21276 * 119.99783 * 246.66469 * 4 3 2 6 6 N 1.34779 * 119.99728 * 66.65903 * 4 3 2 7 7 C 1.46498 * 119.99634 * 185.06132 * 6 4 3 8 8 C 1.50703 * 109.46910 * 180.02562 * 7 6 4 9 9 C 1.38306 * 119.93484 * 90.00108 * 8 7 6 10 10 C 1.38096 * 120.07014 * 180.02562 * 9 8 7 11 11 C 1.38887 * 119.92925 * 359.97303 * 10 9 8 12 12 O 1.35753 * 120.06542 * 180.02562 * 11 10 9 13 13 C 1.34827 * 116.99987 * 354.18734 * 12 11 10 14 14 H 1.07996 * 120.00451 * 5.06441 * 13 12 11 15 15 C 1.38657 * 120.00029 * 185.06965 * 13 12 11 16 16 N 1.31558 * 120.00330 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99833 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47448 * 90.00201 * 17 15 13 19 19 H 1.48507 * 109.47153 * 210.00258 * 17 15 13 20 20 H 1.48509 * 109.47055 * 330.00107 * 17 15 13 21 21 C 1.38872 * 119.86215 * 0.27728 * 11 10 9 22 22 C 1.38107 * 119.93169 * 359.49119 * 21 11 10 23 23 C 1.53185 * 109.54396 * 182.73171 * 3 2 1 24 24 C 1.53278 * 109.06709 * 176.85268 * 23 3 2 25 25 O 1.42901 * 109.46043 * 302.45238 * 24 23 3 26 26 C 1.42893 * 114.09974 * 61.15665 * 25 24 23 27 27 C 1.53099 * 109.41617 * 298.84013 * 26 25 24 28 28 H 1.08999 * 109.47295 * 66.14836 * 1 2 3 29 29 H 1.08997 * 109.47521 * 186.15065 * 1 2 3 30 30 H 1.09006 * 109.46828 * 306.15077 * 1 2 3 31 31 H 1.09004 * 109.46345 * 240.00415 * 2 1 3 32 32 H 1.08999 * 109.46977 * 120.00773 * 2 1 3 33 33 H 0.97001 * 120.00000 * 5.06260 * 6 4 3 34 34 H 1.08998 * 109.47623 * 60.00352 * 7 6 4 35 35 H 1.09001 * 109.46984 * 299.99780 * 7 6 4 36 36 H 1.07993 * 119.96146 * 359.97438 * 9 8 7 37 37 H 1.08000 * 120.03669 * 179.97438 * 10 9 8 38 38 H 0.96995 * 120.00119 * 179.97438 * 16 15 13 39 39 H 1.07999 * 120.03170 * 179.72508 * 21 11 10 40 40 H 1.07993 * 119.96340 * 180.22975 * 22 21 11 41 41 H 1.09001 * 109.52264 * 296.84911 * 23 3 2 42 42 H 1.09006 * 109.52057 * 57.03100 * 23 3 2 43 43 H 1.08994 * 109.45680 * 182.44872 * 24 23 3 44 44 H 1.09007 * 109.46249 * 62.45351 * 24 23 3 45 45 H 1.09003 * 109.47963 * 178.85807 * 26 25 24 46 46 H 1.08997 * 109.49461 * 58.83193 * 26 25 24 47 47 H 1.09001 * 109.51780 * 297.70406 * 27 26 25 48 48 H 1.08996 * 109.57142 * 177.55170 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5910 2.1359 1.2604 5 8 0.7945 3.0485 1.1996 6 7 2.0745 1.7418 2.4552 7 6 1.5564 2.3395 3.6883 8 6 2.2578 1.7305 4.8750 9 6 3.4199 2.3037 5.3587 10 6 4.0652 1.7476 6.4456 11 6 3.5458 0.6120 7.0534 12 8 4.1776 0.0634 8.1224 13 6 5.3666 0.5955 8.4701 14 1 5.7364 1.4718 7.9585 15 6 6.1148 0.0177 9.4845 16 7 7.2747 0.5373 9.8241 17 14 5.4750 -1.4976 10.3698 18 1 5.9456 -2.7177 9.6662 19 1 5.9805 -1.5055 11.7662 20 1 3.9901 -1.4744 10.3811 21 6 2.3816 0.0358 6.5621 22 6 1.7383 0.5994 5.4778 23 6 3.5703 1.4449 -0.0688 24 6 4.0656 2.8933 -0.1477 25 8 3.4851 3.5337 -1.2856 26 6 2.0581 3.6014 -1.2523 27 6 1.4820 2.1833 -1.2190 28 1 -0.3634 0.4155 -0.9399 29 1 -0.3634 -1.0217 0.1101 30 1 -0.3633 0.6063 0.8299 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5140 0.8899 33 1 2.7655 1.0624 2.4986 34 1 0.4856 2.1499 3.7621 35 1 1.7348 3.4147 3.6736 36 1 3.8234 3.1865 4.8854 37 1 4.9728 2.1954 6.8227 38 1 7.7979 0.1333 10.5340 39 1 1.9778 -0.8499 7.0299 40 1 0.8310 0.1539 5.0976 41 1 3.9758 0.9670 0.8230 42 1 3.8959 0.9002 -0.9551 43 1 5.1515 2.9011 -0.2407 44 1 3.7745 3.4265 0.7574 45 1 1.6979 4.1192 -2.1412 46 1 1.7404 4.1438 -0.3619 47 1 1.7655 1.6536 -2.1285 48 1 0.3954 2.2322 -1.1497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272290414.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:02 Heat of formation + Delta-G solvation = -100.113429 kcal Electronic energy + Delta-G solvation = -28968.735083 eV Core-core repulsion = 24988.791927 eV Total energy + Delta-G solvation = -3979.943156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.18414 -39.39559 -38.32947 -37.06776 -35.69106 -34.60959 -32.52088 -31.64326 -30.86239 -30.44258 -30.05102 -26.57953 -25.67206 -24.59149 -23.93611 -22.40066 -22.21543 -21.87971 -20.67213 -19.45469 -18.02691 -17.46270 -17.01522 -16.35026 -16.20459 -16.03276 -15.58311 -15.06050 -14.86197 -14.71400 -14.42104 -14.20722 -14.04174 -13.93048 -13.65145 -13.47575 -13.42824 -12.86212 -12.75093 -12.58701 -12.46818 -12.31205 -12.29343 -12.05229 -11.74640 -11.53055 -11.51582 -11.32490 -11.02337 -10.89051 -10.81556 -10.67272 -10.61825 -10.26140 -9.87453 -9.53745 -9.52213 -9.04317 -8.98297 -8.43240 -7.52639 -6.53471 -4.20628 1.90006 1.97521 2.54212 3.13328 3.17610 3.25225 3.32061 3.70544 4.13416 4.18434 4.25737 4.39557 4.44850 4.70179 4.72590 4.76898 4.93311 4.98370 4.98681 5.08442 5.13550 5.15402 5.28546 5.32052 5.33548 5.50215 5.51412 5.54441 5.57782 5.64473 5.66960 5.70592 5.77948 5.78972 5.84278 5.93937 5.98172 6.01669 6.19596 6.39125 6.43558 6.62671 6.84981 7.01465 7.07312 7.13875 7.44691 7.49412 7.66680 7.90406 8.15386 8.80958 9.41247 10.53655 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019623 B = 0.002443 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.560759 B =11459.930702 C =11922.595814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.109 4.109 3 C -0.080 4.080 4 C 0.522 3.478 5 O -0.543 6.543 6 N -0.720 5.720 7 C 0.177 3.823 8 C -0.207 4.207 9 C -0.052 4.052 10 C -0.223 4.223 11 C 0.167 3.833 12 O -0.212 6.212 13 C -0.392 4.392 14 H 0.108 0.892 15 C 0.065 3.935 16 N -0.875 5.875 17 Si 0.906 3.094 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.259 1.259 21 C -0.195 4.195 22 C -0.056 4.056 23 C -0.146 4.146 24 C 0.058 3.942 25 O -0.384 6.384 26 C 0.050 3.950 27 C -0.128 4.128 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.401 0.599 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.135 0.865 38 H 0.281 0.719 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.050 0.950 45 H 0.091 0.909 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.017 -0.184 -20.108 22.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.147 4.147 3 C -0.083 4.083 4 C 0.308 3.692 5 O -0.421 6.421 6 N -0.372 5.372 7 C 0.055 3.945 8 C -0.208 4.208 9 C -0.071 4.071 10 C -0.243 4.243 11 C 0.114 3.886 12 O -0.116 6.116 13 C -0.468 4.468 14 H 0.125 0.875 15 C -0.139 4.139 16 N -0.512 5.512 17 Si 0.731 3.269 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.183 1.183 21 C -0.214 4.214 22 C -0.075 4.075 23 C -0.184 4.184 24 C -0.019 4.019 25 O -0.303 6.303 26 C -0.026 4.026 27 C -0.166 4.166 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.236 0.764 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.152 0.848 38 H 0.091 0.909 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.116 0.884 44 H 0.069 0.931 45 H 0.109 0.891 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.351 0.349 -19.953 22.481 hybrid contribution 0.204 -1.041 0.847 1.357 sum -10.147 -0.692 -19.106 21.645 Atomic orbital electron populations 1.21842 0.95161 1.01915 1.02405 1.21557 0.96691 0.93354 1.03086 1.20974 0.96550 0.96928 0.93892 1.20419 0.80900 0.83079 0.84770 1.90652 1.34953 1.29452 1.86999 1.46356 1.42060 1.43101 1.05634 1.19997 0.97017 0.96878 0.80580 1.19271 0.99805 1.00701 1.01023 1.20694 0.93590 0.97890 0.94941 1.21283 1.03811 0.99208 0.99963 1.19180 0.91691 0.91420 0.86346 1.83574 1.33397 1.54987 1.39673 1.20785 0.92496 1.13412 1.20058 0.87494 1.24490 0.94432 0.98721 0.96264 1.69639 1.11278 1.40540 1.29717 0.86177 0.80418 0.81788 0.78513 1.19787 1.20652 1.18313 1.20213 0.97442 1.03203 1.00567 1.20524 0.98059 0.94380 0.94550 1.22349 0.93322 0.98824 1.03929 1.22613 0.98623 0.91397 0.89273 1.87904 1.20284 1.79004 1.43074 1.22779 0.80398 0.96153 1.03269 1.22060 1.01828 0.96578 0.96173 0.92228 0.92359 0.92471 0.90702 0.91158 0.76424 0.91563 0.91462 0.87148 0.84782 0.90862 0.86373 0.86837 0.90223 0.89749 0.88446 0.93146 0.89101 0.91145 0.90668 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.19 37.16 0.34 -0.93 16 2 C -0.11 -0.84 4.98 -26.73 -0.13 -0.97 16 3 C -0.08 -0.73 0.44 -155.48 -0.07 -0.80 16 4 C 0.52 6.08 3.81 -10.98 -0.04 6.04 16 5 O -0.54 -7.98 14.13 5.56 0.08 -7.90 16 6 N -0.72 -8.07 5.42 -61.47 -0.33 -8.40 16 7 C 0.18 2.26 5.80 -5.19 -0.03 2.23 16 8 C -0.21 -3.03 5.25 -104.57 -0.55 -3.58 16 9 C -0.05 -0.85 9.69 -39.61 -0.38 -1.24 16 10 C -0.22 -4.44 9.17 -39.39 -0.36 -4.81 16 11 C 0.17 3.58 6.65 -39.11 -0.26 3.32 16 12 O -0.21 -5.31 8.59 0.05 0.00 -5.31 16 13 C -0.39 -10.58 9.95 30.89 0.31 -10.27 16 14 H 0.11 2.94 5.44 -52.49 -0.29 2.65 16 15 C 0.07 1.76 5.49 -17.51 -0.10 1.66 16 16 N -0.87 -24.45 13.96 55.48 0.77 -23.68 16 17 Si 0.91 20.85 28.62 -169.99 -4.86 15.98 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.26 -5.98 7.11 56.52 0.40 -5.58 16 21 C -0.19 -3.53 9.99 -39.39 -0.39 -3.92 16 22 C -0.06 -0.85 9.69 -39.61 -0.38 -1.24 16 23 C -0.15 -1.21 4.82 -26.49 -0.13 -1.34 16 24 C 0.06 0.57 6.62 37.30 0.25 0.82 16 25 O -0.38 -4.42 10.77 -35.23 -0.38 -4.80 16 26 C 0.05 0.53 6.56 37.21 0.24 0.77 16 27 C -0.13 -1.18 4.04 -26.59 -0.11 -1.28 16 28 H 0.06 0.45 6.82 -51.93 -0.35 0.10 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.57 7.11 -51.93 -0.37 0.21 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.40 4.05 7.34 -40.82 -0.30 3.75 16 34 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 37 H 0.13 2.84 5.64 -52.49 -0.30 2.55 16 38 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 40 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 41 H 0.08 0.59 7.06 -51.93 -0.37 0.22 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.56 7.38 -51.92 -0.38 0.17 16 45 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 0.88 6.06 -51.93 -0.31 0.57 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.80 6.51 -51.93 -0.34 0.46 16 LS Contribution 379.95 15.07 5.73 5.73 Total: -1.00 -29.51 379.95 -8.00 -37.51 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -7.21 Total: 6.38 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -1.80 Total: -15.51 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.44 Total: -32.08 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.30 Total: -18.01 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.86 Total: 15.98 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.51 -8.00 -37.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272290414.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.599 kcal (2) G-P(sol) polarization free energy of solvation -29.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds