Wall clock time and date at job start Tue Mar 31 2020 18:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47093 * 2 1 4 4 C 1.50705 * 109.54345 * 62.55945 * 3 2 1 5 5 O 1.21276 * 119.99783 * 246.66469 * 4 3 2 6 6 N 1.34779 * 119.99728 * 66.65903 * 4 3 2 7 7 C 1.46498 * 119.99634 * 185.06132 * 6 4 3 8 8 C 1.50703 * 109.46910 * 180.02562 * 7 6 4 9 9 C 1.38306 * 119.93484 * 90.00108 * 8 7 6 10 10 C 1.38096 * 120.07014 * 180.02562 * 9 8 7 11 11 C 1.38887 * 119.92925 * 359.97303 * 10 9 8 12 12 O 1.35753 * 120.06542 * 180.02562 * 11 10 9 13 13 C 1.34827 * 116.99987 * 354.18734 * 12 11 10 14 14 H 1.07996 * 120.00451 * 5.06441 * 13 12 11 15 15 C 1.38657 * 120.00029 * 185.06965 * 13 12 11 16 16 N 1.31558 * 120.00330 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99833 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47448 * 90.00201 * 17 15 13 19 19 H 1.48507 * 109.47153 * 210.00258 * 17 15 13 20 20 H 1.48509 * 109.47055 * 330.00107 * 17 15 13 21 21 C 1.38872 * 119.86215 * 0.27728 * 11 10 9 22 22 C 1.38107 * 119.93169 * 359.49119 * 21 11 10 23 23 C 1.53185 * 109.54396 * 182.73171 * 3 2 1 24 24 C 1.53278 * 109.06709 * 176.85268 * 23 3 2 25 25 O 1.42901 * 109.46043 * 302.45238 * 24 23 3 26 26 C 1.42893 * 114.09974 * 61.15665 * 25 24 23 27 27 C 1.53099 * 109.41617 * 298.84013 * 26 25 24 28 28 H 1.08999 * 109.47295 * 66.14836 * 1 2 3 29 29 H 1.08997 * 109.47521 * 186.15065 * 1 2 3 30 30 H 1.09006 * 109.46828 * 306.15077 * 1 2 3 31 31 H 1.09004 * 109.46345 * 240.00415 * 2 1 3 32 32 H 1.08999 * 109.46977 * 120.00773 * 2 1 3 33 33 H 0.97001 * 120.00000 * 5.06260 * 6 4 3 34 34 H 1.08998 * 109.47623 * 60.00352 * 7 6 4 35 35 H 1.09001 * 109.46984 * 299.99780 * 7 6 4 36 36 H 1.07993 * 119.96146 * 359.97438 * 9 8 7 37 37 H 1.08000 * 120.03669 * 179.97438 * 10 9 8 38 38 H 0.96995 * 120.00119 * 179.97438 * 16 15 13 39 39 H 1.07999 * 120.03170 * 179.72508 * 21 11 10 40 40 H 1.07993 * 119.96340 * 180.22975 * 22 21 11 41 41 H 1.09001 * 109.52264 * 296.84911 * 23 3 2 42 42 H 1.09006 * 109.52057 * 57.03100 * 23 3 2 43 43 H 1.08994 * 109.45680 * 182.44872 * 24 23 3 44 44 H 1.09007 * 109.46249 * 62.45351 * 24 23 3 45 45 H 1.09003 * 109.47963 * 178.85807 * 26 25 24 46 46 H 1.08997 * 109.49461 * 58.83193 * 26 25 24 47 47 H 1.09001 * 109.51780 * 297.70406 * 27 26 25 48 48 H 1.08996 * 109.57142 * 177.55170 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5910 2.1359 1.2604 5 8 0.7945 3.0485 1.1996 6 7 2.0745 1.7418 2.4552 7 6 1.5564 2.3395 3.6883 8 6 2.2578 1.7305 4.8750 9 6 3.4199 2.3037 5.3587 10 6 4.0652 1.7476 6.4456 11 6 3.5458 0.6120 7.0534 12 8 4.1776 0.0634 8.1224 13 6 5.3666 0.5955 8.4701 14 1 5.7364 1.4718 7.9585 15 6 6.1148 0.0177 9.4845 16 7 7.2747 0.5373 9.8241 17 14 5.4750 -1.4976 10.3698 18 1 5.9456 -2.7177 9.6662 19 1 5.9805 -1.5055 11.7662 20 1 3.9901 -1.4744 10.3811 21 6 2.3816 0.0358 6.5621 22 6 1.7383 0.5994 5.4778 23 6 3.5703 1.4449 -0.0688 24 6 4.0656 2.8933 -0.1477 25 8 3.4851 3.5337 -1.2856 26 6 2.0581 3.6014 -1.2523 27 6 1.4820 2.1833 -1.2190 28 1 -0.3634 0.4155 -0.9399 29 1 -0.3634 -1.0217 0.1101 30 1 -0.3633 0.6063 0.8299 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5140 0.8899 33 1 2.7655 1.0624 2.4986 34 1 0.4856 2.1499 3.7621 35 1 1.7348 3.4147 3.6736 36 1 3.8234 3.1865 4.8854 37 1 4.9728 2.1954 6.8227 38 1 7.7979 0.1333 10.5340 39 1 1.9778 -0.8499 7.0299 40 1 0.8310 0.1539 5.0976 41 1 3.9758 0.9670 0.8230 42 1 3.8959 0.9002 -0.9551 43 1 5.1515 2.9011 -0.2407 44 1 3.7745 3.4265 0.7574 45 1 1.6979 4.1192 -2.1412 46 1 1.7404 4.1438 -0.3619 47 1 1.7655 1.6536 -2.1285 48 1 0.3954 2.2322 -1.1497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272290414.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:01 Heat of formation + Delta-G solvation = -118.452285 kcal Electronic energy + Delta-G solvation = -28969.530316 eV Core-core repulsion = 24988.791927 eV Total energy + Delta-G solvation = -3980.738389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.03498 -40.94762 -39.33185 -38.52232 -36.46966 -35.74307 -34.45351 -32.42721 -31.89299 -31.60265 -31.31560 -27.95777 -26.88141 -25.86912 -24.68166 -23.74072 -23.25751 -22.61052 -22.05630 -20.40283 -19.83371 -19.13696 -17.89153 -17.22189 -17.08920 -16.95836 -16.73742 -16.36856 -16.17226 -15.76894 -15.67166 -15.50638 -15.35419 -15.08505 -14.73670 -14.64800 -14.34211 -14.20696 -14.12336 -14.02301 -13.37840 -13.27988 -13.23245 -13.10343 -12.94453 -12.59915 -12.48671 -12.42882 -12.34821 -12.21656 -11.98236 -11.94324 -11.41303 -11.35369 -11.31782 -10.94612 -10.72820 -10.37929 -10.05157 -9.85286 -9.10574 -8.51651 -6.24839 0.47319 0.52714 1.32283 1.35327 1.51909 1.63506 2.24628 2.26933 2.78211 2.93429 3.03735 3.13414 3.49214 3.57042 3.74048 3.80776 3.98781 4.01175 4.04490 4.11946 4.24820 4.33610 4.40729 4.47303 4.49117 4.52175 4.56112 4.64958 4.70614 4.78370 4.79265 4.86319 4.93324 4.93880 5.02193 5.05307 5.13670 5.16314 5.20004 5.23391 5.32206 5.39319 5.44159 5.52493 5.68881 5.77302 5.86863 6.17427 6.22078 6.56314 6.82529 7.23780 7.55224 8.59680 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019623 B = 0.002443 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.560759 B =11459.930702 C =11922.595814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.106 4.106 3 C -0.076 4.076 4 C 0.523 3.477 5 O -0.575 6.575 6 N -0.715 5.715 7 C 0.183 3.817 8 C -0.173 4.173 9 C -0.051 4.051 10 C -0.237 4.237 11 C 0.130 3.870 12 O -0.241 6.241 13 C -0.400 4.400 14 H 0.082 0.918 15 C 0.011 3.989 16 N -0.922 5.922 17 Si 0.970 3.030 18 H -0.264 1.264 19 H -0.270 1.270 20 H -0.262 1.262 21 C -0.191 4.191 22 C -0.044 4.044 23 C -0.142 4.142 24 C 0.052 3.948 25 O -0.398 6.398 26 C 0.048 3.952 27 C -0.125 4.125 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.409 0.591 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.131 0.869 37 H 0.109 0.891 38 H 0.285 0.715 39 H 0.132 0.868 40 H 0.154 0.846 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.032 0.968 45 H 0.103 0.897 46 H 0.045 0.955 47 H 0.093 0.907 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.033 -1.899 -22.516 25.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 C -0.079 4.079 4 C 0.311 3.689 5 O -0.454 6.454 6 N -0.367 5.367 7 C 0.060 3.940 8 C -0.174 4.174 9 C -0.069 4.069 10 C -0.257 4.257 11 C 0.080 3.920 12 O -0.148 6.148 13 C -0.476 4.476 14 H 0.100 0.900 15 C -0.188 4.188 16 N -0.563 5.563 17 Si 0.792 3.208 18 H -0.189 1.189 19 H -0.195 1.195 20 H -0.186 1.186 21 C -0.210 4.210 22 C -0.063 4.063 23 C -0.180 4.180 24 C -0.025 4.025 25 O -0.317 6.317 26 C -0.028 4.028 27 C -0.163 4.163 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.245 0.755 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.149 0.851 37 H 0.127 0.873 38 H 0.095 0.905 39 H 0.150 0.850 40 H 0.171 0.829 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.128 0.872 44 H 0.051 0.949 45 H 0.121 0.879 46 H 0.063 0.937 47 H 0.112 0.888 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.388 -1.364 -22.402 25.635 hybrid contribution 0.605 -0.310 1.260 1.431 sum -11.783 -1.674 -21.142 24.262 Atomic orbital electron populations 1.21832 0.95578 1.02145 1.01680 1.21586 0.96239 0.92158 1.04374 1.20998 0.97149 0.97590 0.92190 1.20884 0.80111 0.82513 0.85414 1.90649 1.36456 1.30903 1.87428 1.46191 1.42224 1.43163 1.05094 1.19883 0.97242 0.96617 0.80243 1.19527 0.98078 0.99382 1.00429 1.20891 0.93919 0.98396 0.93742 1.21258 1.03593 0.99460 1.01342 1.19733 0.93049 0.92497 0.86705 1.83523 1.33049 1.56158 1.42113 1.20702 0.93692 1.12979 1.20217 0.90006 1.25286 0.94663 1.01692 0.97125 1.69726 1.12772 1.42544 1.31212 0.85224 0.79426 0.78336 0.77791 1.18910 1.19459 1.18582 1.20520 0.96048 1.03473 1.00931 1.20932 0.98679 0.93759 0.92892 1.22357 0.92504 0.97777 1.05320 1.22741 0.99415 0.92222 0.88124 1.87886 1.20707 1.79487 1.43625 1.22798 0.80185 0.97123 1.02685 1.22046 1.01443 0.95797 0.97004 0.91882 0.91273 0.94664 0.88675 0.90624 0.75475 0.90595 0.91829 0.85128 0.87346 0.90528 0.85049 0.82856 0.89100 0.88042 0.87178 0.94943 0.87902 0.93662 0.88833 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.19 71.98 0.66 -1.40 16 2 C -0.11 -1.22 4.98 30.59 0.15 -1.07 16 3 C -0.08 -1.17 0.44 -52.81 -0.02 -1.19 16 4 C 0.52 11.02 3.81 87.66 0.33 11.35 16 5 O -0.57 -16.14 14.13 -3.02 -0.04 -16.18 16 6 N -0.71 -13.91 5.42 -466.79 -2.53 -16.44 16 7 C 0.18 4.09 5.80 85.63 0.50 4.58 16 8 C -0.17 -4.54 5.25 -19.83 -0.10 -4.64 16 9 C -0.05 -1.59 9.69 22.25 0.22 -1.38 16 10 C -0.24 -9.67 9.17 22.39 0.21 -9.46 16 11 C 0.13 5.63 6.65 22.58 0.15 5.78 16 12 O -0.24 -12.48 8.59 -22.74 -0.20 -12.67 16 13 C -0.40 -22.72 9.95 67.92 0.68 -22.05 16 14 H 0.08 4.88 5.44 -2.91 -0.02 4.86 16 15 C 0.01 0.62 5.49 84.83 0.47 1.09 16 16 N -0.92 -53.90 13.96 21.61 0.30 -53.60 16 17 Si 0.97 43.94 28.62 68.60 1.96 45.90 16 18 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 20 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 21 C -0.19 -6.52 9.99 22.39 0.22 -6.29 16 22 C -0.04 -1.17 9.69 22.25 0.22 -0.96 16 23 C -0.14 -1.91 4.82 30.75 0.15 -1.76 16 24 C 0.05 0.93 6.62 72.08 0.48 1.40 16 25 O -0.40 -8.58 10.77 -148.98 -1.60 -10.19 16 26 C 0.05 0.96 6.56 72.02 0.47 1.43 16 27 C -0.13 -2.00 4.04 30.68 0.12 -1.87 16 28 H 0.06 0.78 6.82 -2.39 -0.02 0.77 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.03 0.62 7.11 -2.38 -0.02 0.60 16 31 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.41 6.82 7.34 -92.71 -0.68 6.14 16 34 H 0.08 1.64 8.08 -2.39 -0.02 1.62 16 35 H 0.06 1.54 8.08 -2.39 -0.02 1.52 16 36 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 37 H 0.11 4.96 5.64 -2.91 -0.02 4.94 16 38 H 0.29 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 40 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 41 H 0.09 1.03 7.06 -2.39 -0.02 1.01 16 42 H 0.10 1.08 8.14 -2.38 -0.02 1.07 16 43 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.03 0.69 7.38 -2.38 -0.02 0.67 16 45 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.05 1.13 6.06 -2.39 -0.01 1.11 16 47 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.08 1.36 6.51 -2.39 -0.02 1.34 16 Total: -1.00 -67.76 379.95 3.08 -64.68 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.29 Total: 24.91 kcal Atomic # 6 Polarization: -31.30 SS G_CDS: 4.89 Total: -26.41 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -2.23 Total: -70.04 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -1.84 Total: -39.04 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.96 Total: 45.90 kcal Total: -67.76 3.08 -64.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272290414.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.770 kcal (2) G-P(sol) polarization free energy of solvation -67.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds