Wall clock time and date at job start Tue Mar 31 2020 18:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46797 * 2 1 4 4 C 1.53006 * 109.46616 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47328 * 299.99828 * 3 2 1 6 6 C 1.53006 * 109.47234 * 300.00392 * 5 3 2 7 7 O 1.42896 * 109.47139 * 179.97438 * 6 5 3 8 8 N 1.46495 * 109.47635 * 60.00356 * 3 2 1 9 9 C 1.34778 * 119.99948 * 59.99370 * 8 3 2 10 10 O 1.21719 * 120.00056 * 0.02562 * 9 8 3 11 11 C 1.46255 * 119.99683 * 180.02562 * 9 8 3 12 12 C 1.35029 * 119.99570 * 179.97438 * 11 9 8 13 13 C 1.46965 * 119.99584 * 179.97438 * 12 11 9 14 14 C 1.40022 * 120.10157 * 359.45305 * 13 12 11 15 15 C 1.37596 * 119.89269 * 179.69699 * 14 13 12 16 16 C 1.39177 * 120.10258 * 0.60002 * 15 14 13 17 17 O 1.35574 * 119.89788 * 179.69642 * 16 15 14 18 18 C 1.34776 * 117.00213 * 174.41927 * 17 16 15 19 19 H 1.08006 * 119.99458 * 5.06162 * 18 17 16 20 20 C 1.38711 * 120.00529 * 185.05418 * 18 17 16 21 21 N 1.31517 * 119.99798 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00356 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47158 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47005 * 120.00418 * 22 20 18 25 25 H 1.48500 * 109.47611 * 240.00033 * 22 20 18 26 26 C 1.39170 * 120.20383 * 359.67511 * 16 15 14 27 27 C 1.37599 * 120.10134 * 0.02562 * 26 16 15 28 28 H 1.09001 * 109.46756 * 300.00061 * 1 2 3 29 29 H 1.08999 * 109.47067 * 60.00037 * 1 2 3 30 30 H 1.08994 * 109.47360 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46756 * 239.99938 * 2 1 3 32 32 H 1.08999 * 109.47067 * 119.99963 * 2 1 3 33 33 H 1.08999 * 109.46895 * 299.99747 * 4 3 2 34 34 H 1.08991 * 109.47564 * 60.00118 * 4 3 2 35 35 H 1.09002 * 109.46582 * 179.97438 * 4 3 2 36 36 H 1.09000 * 109.47003 * 60.00275 * 5 3 2 37 37 H 1.08994 * 109.47294 * 180.02562 * 5 3 2 38 38 H 1.09000 * 109.47030 * 299.99867 * 6 5 3 39 39 H 1.09002 * 109.47152 * 59.99459 * 6 5 3 40 40 H 0.96696 * 113.99958 * 180.02562 * 7 6 5 41 41 H 0.96997 * 120.00107 * 239.99920 * 8 3 2 42 42 H 1.07997 * 120.00400 * 0.02562 * 11 9 8 43 43 H 1.07995 * 120.00043 * 359.72553 * 12 11 9 44 44 H 1.07996 * 120.04869 * 359.97438 * 14 13 12 45 45 H 1.08003 * 119.94749 * 180.27231 * 15 14 13 46 46 H 0.97002 * 120.00056 * 180.02562 * 21 20 18 47 47 H 1.08002 * 119.94913 * 180.02562 * 26 16 15 48 48 H 1.08001 * 120.05393 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 1.5300 2.1638 -1.2492 6 6 2.0400 1.4425 -2.4985 7 8 1.5632 2.1158 -3.6653 8 7 1.5517 2.1332 1.1961 9 6 1.8773 1.6727 2.4202 10 8 2.5774 0.6833 2.5319 11 6 1.3894 2.3619 3.6144 12 6 1.7152 1.9003 4.8408 13 6 1.2254 2.5932 6.0407 14 6 0.4303 3.7388 5.9147 15 6 -0.0312 4.3805 7.0409 16 6 0.3016 3.8999 8.3040 17 8 -0.1503 4.5390 9.4109 18 6 0.1088 3.9603 10.6002 19 1 0.7234 3.0734 10.6467 20 6 -0.4137 4.5038 11.7646 21 7 -1.1624 5.5836 11.7079 22 14 -0.0552 3.7014 13.4128 23 1 0.8045 2.5083 13.2060 24 1 0.6466 4.6701 14.2928 25 1 -1.3311 3.2881 14.0503 26 6 1.0964 2.7649 8.4341 27 6 1.5573 2.1130 7.3135 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9337 0.9285 0.8891 34 1 3.9330 0.9288 -0.8908 35 1 3.9333 2.4702 -0.0011 36 1 0.4400 2.1638 -1.2492 37 1 1.8936 3.1913 -1.2495 38 1 3.1300 1.4425 -2.4985 39 1 1.6767 0.4148 -2.4985 40 1 1.8481 1.7120 -4.4964 41 1 0.9941 2.9218 1.1072 42 1 0.7679 3.2396 3.5153 43 1 2.3324 1.0196 4.9398 44 1 0.1759 4.1154 4.9350 45 1 -0.6482 5.2617 6.9447 46 1 -1.5275 5.9639 12.5222 47 1 1.3517 2.3952 9.4162 48 1 2.1737 1.2320 7.4153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272498044.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:56 Heat of formation + Delta-G solvation = -84.362276 kcal Electronic energy + Delta-G solvation = -27418.780108 eV Core-core repulsion = 23439.519973 eV Total energy + Delta-G solvation = -3979.260135 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.42039 -39.19305 -38.03257 -36.92602 -36.30288 -33.25264 -32.68007 -32.20021 -31.03730 -30.43256 -28.95351 -28.04381 -25.72948 -24.79218 -23.61481 -23.04879 -22.15221 -20.80790 -19.37882 -19.19381 -18.29062 -17.93507 -17.08312 -16.97047 -16.12635 -15.72312 -15.24693 -14.99306 -14.81637 -14.47099 -14.24741 -14.16356 -13.87405 -13.80661 -13.68409 -13.45307 -13.12514 -13.04177 -12.59824 -12.50106 -12.19933 -11.96459 -11.94135 -11.80081 -11.74893 -11.67124 -11.33390 -11.15933 -11.08836 -11.05587 -10.84746 -10.65120 -10.53336 -10.25761 -9.59209 -9.51271 -9.49362 -9.09596 -8.85302 -8.38610 -7.11548 -6.65582 -4.20474 1.07846 2.13120 2.56333 3.03267 3.04468 3.08755 3.10198 3.59318 3.81832 3.83892 4.47487 4.51190 4.54278 4.61146 4.86393 4.91897 4.92504 4.98466 5.04229 5.10314 5.17210 5.27073 5.33883 5.45194 5.50428 5.53168 5.55560 5.59079 5.65748 5.66901 5.77951 5.87754 6.00335 6.01134 6.11478 6.15569 6.19256 6.44293 6.48919 6.53580 6.61962 6.78992 6.91992 7.12899 7.17660 7.23524 7.28097 7.60368 7.63697 7.79913 8.38516 8.79355 9.46419 10.51130 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.033766 B = 0.001705 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.036855 B =16419.056800 C =16748.660782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.139 4.139 3 C 0.183 3.817 4 C -0.168 4.168 5 C -0.125 4.125 6 C 0.077 3.923 7 O -0.576 6.576 8 N -0.725 5.725 9 C 0.560 3.440 10 O -0.554 6.554 11 C -0.284 4.284 12 C 0.038 3.962 13 C -0.198 4.198 14 C -0.043 4.043 15 C -0.200 4.200 16 C 0.167 3.833 17 O -0.163 6.163 18 C -0.393 4.393 19 H 0.098 0.902 20 C 0.041 3.959 21 N -0.852 5.852 22 Si 0.945 3.055 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.242 4.242 27 C -0.035 4.035 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.380 0.620 41 H 0.399 0.601 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.273 0.727 47 H 0.131 0.869 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.261 -7.949 -23.741 25.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.177 4.177 3 C 0.097 3.903 4 C -0.226 4.226 5 C -0.163 4.163 6 C -0.001 4.001 7 O -0.381 6.381 8 N -0.376 5.376 9 C 0.353 3.647 10 O -0.434 6.434 11 C -0.305 4.305 12 C 0.018 3.982 13 C -0.200 4.200 14 C -0.061 4.061 15 C -0.219 4.219 16 C 0.110 3.890 17 O -0.064 6.064 18 C -0.468 4.468 19 H 0.115 0.885 20 C -0.165 4.165 21 N -0.485 5.485 22 Si 0.769 3.231 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.261 4.261 27 C -0.054 4.054 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.227 0.773 41 H 0.233 0.767 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.083 0.917 47 H 0.149 0.851 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.213 -7.870 -22.980 24.844 hybrid contribution 0.121 -0.279 0.373 0.482 sum 5.334 -8.149 -22.607 24.616 Atomic orbital electron populations 1.21783 0.95688 1.01531 1.01848 1.22025 0.96321 0.95796 1.03595 1.20112 0.94097 0.92225 0.83841 1.22311 0.94345 1.02383 1.03521 1.21743 1.02361 1.00117 0.92057 1.22254 0.97708 0.95166 0.85003 1.86454 1.77717 1.57694 1.16284 1.45924 1.54491 1.32087 1.05085 1.18317 0.79374 0.83664 0.83360 1.90702 1.38916 1.26811 1.87020 1.22467 1.10792 1.05215 0.91998 1.22271 0.90139 0.94640 0.91142 1.18470 1.08762 1.00518 0.92205 1.20879 0.94562 0.93535 0.97154 1.20154 1.07769 1.04113 0.89843 1.19612 0.91080 0.90189 0.88083 1.83903 1.65764 1.44397 1.12320 1.21525 1.32634 1.11935 0.80745 0.88487 1.25397 0.95522 0.96150 0.99422 1.70027 1.29730 1.19070 1.29642 0.85579 0.78683 0.79000 0.79829 1.18865 1.19925 1.19909 1.21102 1.05909 0.99807 0.99323 1.20988 0.95770 0.97222 0.91391 0.92449 0.92817 0.92930 0.91624 0.89256 0.89892 0.92100 0.92583 0.90172 0.90632 0.93073 0.93017 0.77287 0.76685 0.86026 0.85965 0.86434 0.86145 0.91653 0.85127 0.86840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.40 37.16 0.35 -0.99 16 2 C -0.14 -1.30 4.43 -26.73 -0.12 -1.42 16 3 C 0.18 1.63 0.53 -131.82 -0.07 1.56 16 4 C -0.17 -1.57 8.05 37.16 0.30 -1.27 16 5 C -0.12 -0.93 4.40 -26.73 -0.12 -1.05 16 6 C 0.08 0.50 6.34 37.16 0.24 0.74 16 7 O -0.58 -4.13 13.66 -35.23 -0.48 -4.62 16 8 N -0.72 -7.14 4.34 -49.03 -0.21 -7.35 16 9 C 0.56 7.32 7.16 -13.04 -0.09 7.23 16 10 O -0.55 -8.71 12.44 5.17 0.06 -8.64 16 11 C -0.28 -3.75 9.41 -37.50 -0.35 -4.11 16 12 C 0.04 0.56 9.45 -37.19 -0.35 0.21 16 13 C -0.20 -3.36 5.87 -105.03 -0.62 -3.97 16 14 C -0.04 -0.73 9.40 -39.15 -0.37 -1.10 16 15 C -0.20 -3.98 9.97 -39.47 -0.39 -4.38 16 16 C 0.17 3.83 6.66 -38.89 -0.26 3.57 16 17 O -0.16 -4.42 9.74 0.74 0.01 -4.41 16 18 C -0.39 -10.43 9.48 30.91 0.29 -10.14 16 19 H 0.10 2.37 5.18 -52.48 -0.27 2.10 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.85 -23.83 13.67 55.48 0.76 -23.07 16 22 Si 0.94 19.52 29.55 -169.99 -5.02 14.50 16 23 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 C -0.24 -5.00 9.14 -39.47 -0.36 -5.36 16 27 C -0.04 -0.63 9.78 -39.15 -0.38 -1.01 16 28 H 0.06 0.58 7.60 -51.93 -0.39 0.18 16 29 H 0.05 0.42 6.43 -51.93 -0.33 0.08 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.51 6.43 -51.93 -0.33 0.17 16 32 H 0.09 1.09 6.16 -51.93 -0.32 0.77 16 33 H 0.08 1.00 6.16 -51.93 -0.32 0.68 16 34 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.61 6.43 -51.93 -0.33 0.28 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.30 6.43 -51.93 -0.33 -0.04 16 39 H 0.05 0.30 6.43 -51.93 -0.33 -0.03 16 40 H 0.38 1.02 9.12 45.56 0.42 1.44 16 41 H 0.40 3.12 8.45 -40.82 -0.34 2.78 16 42 H 0.12 1.40 6.07 -52.49 -0.32 1.09 16 43 H 0.12 1.80 7.52 -52.49 -0.39 1.41 16 44 H 0.12 1.63 6.16 -52.49 -0.32 1.30 16 45 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 46 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.13 2.68 5.62 -52.49 -0.29 2.38 16 48 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 385.14 15.07 5.80 5.80 Total: -1.00 -31.36 385.14 -7.30 -38.67 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.82 Total: 9.64 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -2.40 Total: -20.51 kcal Atomic # 7 Polarization: -30.97 SS G_CDS: 0.55 Total: -30.43 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.41 Total: -17.67 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.36 -7.30 -38.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272498044.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.696 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds