Wall clock time and date at job start Tue Mar 31 2020 18:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46797 * 2 1 4 4 C 1.53006 * 109.46616 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47328 * 299.99828 * 3 2 1 6 6 C 1.53006 * 109.47234 * 300.00392 * 5 3 2 7 7 O 1.42896 * 109.47139 * 179.97438 * 6 5 3 8 8 N 1.46495 * 109.47635 * 60.00356 * 3 2 1 9 9 C 1.34778 * 119.99948 * 59.99370 * 8 3 2 10 10 O 1.21719 * 120.00056 * 0.02562 * 9 8 3 11 11 C 1.46255 * 119.99683 * 180.02562 * 9 8 3 12 12 C 1.35029 * 119.99570 * 179.97438 * 11 9 8 13 13 C 1.46965 * 119.99584 * 179.97438 * 12 11 9 14 14 C 1.40022 * 120.10157 * 359.45305 * 13 12 11 15 15 C 1.37596 * 119.89269 * 179.69699 * 14 13 12 16 16 C 1.39177 * 120.10258 * 0.60002 * 15 14 13 17 17 O 1.35574 * 119.89788 * 179.69642 * 16 15 14 18 18 C 1.34776 * 117.00213 * 174.41927 * 17 16 15 19 19 H 1.08006 * 119.99458 * 5.06162 * 18 17 16 20 20 C 1.38711 * 120.00529 * 185.05418 * 18 17 16 21 21 N 1.31517 * 119.99798 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00356 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47158 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47005 * 120.00418 * 22 20 18 25 25 H 1.48500 * 109.47611 * 240.00033 * 22 20 18 26 26 C 1.39170 * 120.20383 * 359.67511 * 16 15 14 27 27 C 1.37599 * 120.10134 * 0.02562 * 26 16 15 28 28 H 1.09001 * 109.46756 * 300.00061 * 1 2 3 29 29 H 1.08999 * 109.47067 * 60.00037 * 1 2 3 30 30 H 1.08994 * 109.47360 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46756 * 239.99938 * 2 1 3 32 32 H 1.08999 * 109.47067 * 119.99963 * 2 1 3 33 33 H 1.08999 * 109.46895 * 299.99747 * 4 3 2 34 34 H 1.08991 * 109.47564 * 60.00118 * 4 3 2 35 35 H 1.09002 * 109.46582 * 179.97438 * 4 3 2 36 36 H 1.09000 * 109.47003 * 60.00275 * 5 3 2 37 37 H 1.08994 * 109.47294 * 180.02562 * 5 3 2 38 38 H 1.09000 * 109.47030 * 299.99867 * 6 5 3 39 39 H 1.09002 * 109.47152 * 59.99459 * 6 5 3 40 40 H 0.96696 * 113.99958 * 180.02562 * 7 6 5 41 41 H 0.96997 * 120.00107 * 239.99920 * 8 3 2 42 42 H 1.07997 * 120.00400 * 0.02562 * 11 9 8 43 43 H 1.07995 * 120.00043 * 359.72553 * 12 11 9 44 44 H 1.07996 * 120.04869 * 359.97438 * 14 13 12 45 45 H 1.08003 * 119.94749 * 180.27231 * 15 14 13 46 46 H 0.97002 * 120.00056 * 180.02562 * 21 20 18 47 47 H 1.08002 * 119.94913 * 180.02562 * 26 16 15 48 48 H 1.08001 * 120.05393 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 1.5300 2.1638 -1.2492 6 6 2.0400 1.4425 -2.4985 7 8 1.5632 2.1158 -3.6653 8 7 1.5517 2.1332 1.1961 9 6 1.8773 1.6727 2.4202 10 8 2.5774 0.6833 2.5319 11 6 1.3894 2.3619 3.6144 12 6 1.7152 1.9003 4.8408 13 6 1.2254 2.5932 6.0407 14 6 0.4303 3.7388 5.9147 15 6 -0.0312 4.3805 7.0409 16 6 0.3016 3.8999 8.3040 17 8 -0.1503 4.5390 9.4109 18 6 0.1088 3.9603 10.6002 19 1 0.7234 3.0734 10.6467 20 6 -0.4137 4.5038 11.7646 21 7 -1.1624 5.5836 11.7079 22 14 -0.0552 3.7014 13.4128 23 1 0.8045 2.5083 13.2060 24 1 0.6466 4.6701 14.2928 25 1 -1.3311 3.2881 14.0503 26 6 1.0964 2.7649 8.4341 27 6 1.5573 2.1130 7.3135 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9337 0.9285 0.8891 34 1 3.9330 0.9288 -0.8908 35 1 3.9333 2.4702 -0.0011 36 1 0.4400 2.1638 -1.2492 37 1 1.8936 3.1913 -1.2495 38 1 3.1300 1.4425 -2.4985 39 1 1.6767 0.4148 -2.4985 40 1 1.8481 1.7120 -4.4964 41 1 0.9941 2.9218 1.1072 42 1 0.7679 3.2396 3.5153 43 1 2.3324 1.0196 4.9398 44 1 0.1759 4.1154 4.9350 45 1 -0.6482 5.2617 6.9447 46 1 -1.5275 5.9639 12.5222 47 1 1.3517 2.3952 9.4162 48 1 2.1737 1.2320 7.4153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272498044.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:55 Heat of formation + Delta-G solvation = -105.936645 kcal Electronic energy + Delta-G solvation = -27419.715643 eV Core-core repulsion = 23439.519973 eV Total energy + Delta-G solvation = -3980.195670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.34706 -40.81198 -38.92203 -38.37248 -37.01078 -34.72236 -34.06477 -33.45060 -31.96713 -31.72446 -29.89949 -29.20672 -27.51705 -25.69424 -24.35128 -24.19661 -23.64371 -22.07554 -20.59485 -20.09774 -19.71274 -18.87229 -18.60620 -18.03347 -16.79816 -16.57356 -16.39642 -16.35794 -16.09761 -15.94342 -15.61952 -15.43763 -14.96570 -14.90956 -14.63352 -14.54258 -14.30736 -14.10421 -13.94904 -13.60168 -13.33407 -13.18452 -13.14583 -12.87092 -12.73291 -12.61416 -12.54817 -12.39848 -12.18331 -12.10785 -12.04498 -11.79533 -11.54668 -11.21147 -11.10268 -10.74516 -10.56205 -10.54403 -9.97674 -9.89381 -8.67160 -8.52485 -6.18666 -0.21896 0.58246 1.16087 1.35656 1.45212 1.53584 2.14936 2.24234 2.43181 2.86765 3.18021 3.32364 3.42422 3.75379 3.84297 3.92739 3.94953 4.06500 4.08921 4.23999 4.32411 4.36549 4.41191 4.43617 4.48445 4.59015 4.63399 4.67526 4.74859 4.84990 4.90823 4.94837 4.98328 5.03515 5.09991 5.18670 5.19799 5.24638 5.29788 5.34920 5.39773 5.48929 5.59346 5.63764 5.68589 5.82920 5.97338 6.10743 6.70730 6.91279 6.92006 7.38476 7.69304 8.69807 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.033766 B = 0.001705 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.036855 B =16419.056800 C =16748.660782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 C 0.183 3.817 4 C -0.165 4.165 5 C -0.119 4.119 6 C 0.076 3.924 7 O -0.595 6.595 8 N -0.710 5.710 9 C 0.555 3.445 10 O -0.579 6.579 11 C -0.246 4.246 12 C 0.013 3.987 13 C -0.169 4.169 14 C -0.039 4.039 15 C -0.207 4.207 16 C 0.129 3.871 17 O -0.220 6.220 18 C -0.417 4.417 19 H 0.106 0.894 20 C -0.019 4.019 21 N -0.914 5.914 22 Si 1.019 2.981 23 H -0.251 1.251 24 H -0.268 1.268 25 H -0.268 1.268 26 C -0.249 4.249 27 C -0.041 4.041 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.399 0.601 41 H 0.412 0.588 42 H 0.147 0.853 43 H 0.125 0.875 44 H 0.159 0.841 45 H 0.122 0.878 46 H 0.275 0.725 47 H 0.124 0.876 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.203 -9.432 -27.485 29.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C 0.098 3.902 4 C -0.223 4.223 5 C -0.157 4.157 6 C -0.002 4.002 7 O -0.404 6.404 8 N -0.361 5.361 9 C 0.346 3.654 10 O -0.461 6.461 11 C -0.267 4.267 12 C -0.007 4.007 13 C -0.170 4.170 14 C -0.056 4.056 15 C -0.226 4.226 16 C 0.077 3.923 17 O -0.126 6.126 18 C -0.492 4.492 19 H 0.123 0.877 20 C -0.217 4.217 21 N -0.551 5.551 22 Si 0.838 3.162 23 H -0.174 1.174 24 H -0.193 1.193 25 H -0.193 1.193 26 C -0.268 4.268 27 C -0.059 4.059 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.249 0.751 41 H 0.248 0.752 42 H 0.165 0.835 43 H 0.143 0.857 44 H 0.176 0.824 45 H 0.140 0.860 46 H 0.084 0.916 47 H 0.142 0.858 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.176 -9.376 -26.826 29.080 hybrid contribution -0.020 -0.008 0.830 0.830 sum 6.156 -9.384 -25.996 28.315 Atomic orbital electron populations 1.21756 0.95211 1.01710 1.01847 1.21982 0.96656 0.95844 1.03033 1.20197 0.93903 0.92182 0.83960 1.22273 0.94554 1.02346 1.03128 1.21666 1.02346 0.99991 0.91661 1.22254 0.98175 0.95247 0.84479 1.86399 1.78117 1.58463 1.17396 1.45864 1.53572 1.32097 1.04561 1.18360 0.79371 0.83451 0.84250 1.90723 1.39957 1.27922 1.87499 1.22833 1.07882 1.04420 0.91535 1.22144 0.92150 0.95619 0.90760 1.18802 1.06071 0.99376 0.92740 1.21277 0.93522 0.92960 0.97877 1.20423 1.07932 1.04494 0.89772 1.20183 0.92246 0.91544 0.88342 1.83884 1.68982 1.46478 1.13207 1.21938 1.33308 1.12577 0.81401 0.87721 1.26609 0.95216 0.96695 1.03221 1.70158 1.32706 1.21574 1.30642 0.84520 0.78780 0.78324 0.74565 1.17425 1.19296 1.19312 1.21199 1.05849 0.99510 1.00231 1.21315 0.95838 0.97959 0.90819 0.93742 0.91401 0.92795 0.89813 0.92228 0.92700 0.90118 0.92396 0.90061 0.90586 0.92255 0.92202 0.75149 0.75166 0.83514 0.85705 0.82360 0.85988 0.91607 0.85812 0.83837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.40 71.98 0.68 -1.53 16 2 C -0.14 -2.21 4.43 30.60 0.14 -2.07 16 3 C 0.18 2.70 0.53 3.61 0.00 2.71 16 4 C -0.17 -2.67 8.05 71.98 0.58 -2.09 16 5 C -0.12 -1.36 4.40 30.60 0.13 -1.22 16 6 C 0.08 0.72 6.34 71.98 0.46 1.18 16 7 O -0.60 -6.61 13.66 -148.98 -2.03 -8.64 16 8 N -0.71 -11.58 4.34 -427.24 -1.85 -13.44 16 9 C 0.55 12.75 7.16 86.33 0.62 13.37 16 10 O -0.58 -17.02 12.44 -4.41 -0.05 -17.07 16 11 C -0.25 -5.48 9.41 23.62 0.22 -5.26 16 12 C 0.01 0.35 9.45 23.82 0.23 0.57 16 13 C -0.17 -5.25 5.87 -20.13 -0.12 -5.37 16 14 C -0.04 -1.21 9.40 22.55 0.21 -1.00 16 15 C -0.21 -8.30 9.97 22.34 0.22 -8.07 16 16 C 0.13 6.17 6.66 22.72 0.15 6.32 16 17 O -0.22 -12.82 9.74 -20.26 -0.20 -13.02 16 18 C -0.42 -23.53 9.48 67.93 0.64 -22.89 16 19 H 0.11 5.42 5.18 -2.91 -0.02 5.40 16 20 C -0.02 -1.04 5.49 84.85 0.47 -0.57 16 21 N -0.91 -54.54 13.67 21.62 0.30 -54.25 16 22 Si 1.02 41.66 29.55 68.60 2.03 43.68 16 23 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 24 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 25 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 26 C -0.25 -10.48 9.14 22.34 0.20 -10.28 16 27 C -0.04 -1.41 9.78 22.55 0.22 -1.19 16 28 H 0.04 0.77 7.60 -2.39 -0.02 0.75 16 29 H 0.07 0.83 6.43 -2.39 -0.02 0.81 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 1.04 6.43 -2.39 -0.02 1.02 16 32 H 0.06 1.36 6.16 -2.39 -0.01 1.35 16 33 H 0.05 1.23 6.16 -2.39 -0.01 1.22 16 34 H 0.08 0.96 6.43 -2.39 -0.02 0.95 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.94 6.43 -2.39 -0.02 0.92 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.46 6.43 -2.39 -0.02 0.45 16 39 H 0.06 0.47 6.43 -2.39 -0.02 0.45 16 40 H 0.40 0.92 9.12 -74.06 -0.68 0.24 16 41 H 0.41 4.72 8.45 -92.71 -0.78 3.94 16 42 H 0.15 2.54 6.07 -2.91 -0.02 2.52 16 43 H 0.13 3.33 7.52 -2.91 -0.02 3.31 16 44 H 0.16 3.61 6.16 -2.91 -0.02 3.60 16 45 H 0.12 4.75 8.06 -2.91 -0.02 4.72 16 46 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 47 H 0.12 5.29 5.62 -2.91 -0.02 5.27 16 48 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -73.77 385.14 2.79 -70.98 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: -0.44 Total: 29.15 kcal Atomic # 6 Polarization: -42.45 SS G_CDS: 5.05 Total: -37.40 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -1.56 Total: -67.68 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -2.29 Total: -38.74 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -73.77 2.79 -70.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272498044.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.960 kcal (2) G-P(sol) polarization free energy of solvation -73.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds