Wall clock time and date at job start Tue Mar 31 2020 18:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.50078 * 2 1 4 4 C 1.53197 * 109.49599 * 120.05857 * 2 1 3 5 5 N 1.46921 * 108.77485 * 174.58441 * 4 2 1 6 6 C 1.34786 * 120.62839 * 126.41521 * 5 4 2 7 7 O 1.21275 * 119.99718 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99891 * 179.97438 * 6 5 4 9 9 C 1.50697 * 109.47115 * 180.02562 * 8 6 5 10 10 C 1.38331 * 119.96274 * 269.72413 * 9 8 6 11 11 C 1.38279 * 120.13528 * 179.76065 * 10 9 8 12 12 C 1.38125 * 120.06751 * 0.52083 * 11 10 9 13 13 C 1.38851 * 119.93125 * 359.73486 * 12 11 10 14 14 O 1.35759 * 120.06825 * 179.97438 * 13 12 11 15 15 C 1.34826 * 116.99639 * 354.48888 * 14 13 12 16 16 H 1.07996 * 120.00252 * 5.05877 * 15 14 13 17 17 C 1.38654 * 119.99640 * 185.05944 * 15 14 13 18 18 N 1.31559 * 120.00072 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00275 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46977 * 89.99973 * 19 17 15 21 21 H 1.48493 * 109.47441 * 210.00153 * 19 17 15 22 22 H 1.48506 * 109.46850 * 330.00184 * 19 17 15 23 23 C 1.38081 * 119.96766 * 90.00008 * 9 8 6 24 24 C 1.46920 * 118.74310 * 306.39475 * 5 4 2 25 25 C 1.53189 * 108.77792 * 53.60732 * 24 5 4 26 26 C 1.53047 * 109.33984 * 305.35464 * 25 24 5 27 27 H 1.09007 * 109.45181 * 301.35659 * 26 25 24 28 28 O 1.42897 * 109.46166 * 181.40078 * 26 25 24 29 29 H 1.09008 * 109.47460 * 299.94487 * 1 2 3 30 30 H 1.09007 * 109.47031 * 59.93983 * 1 2 3 31 31 H 1.09001 * 109.47537 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47526 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46745 * 300.06316 * 3 2 1 34 34 H 1.08999 * 109.47399 * 60.05850 * 3 2 1 35 35 H 1.09004 * 109.58435 * 54.80311 * 4 2 1 36 36 H 1.09000 * 109.70827 * 294.44588 * 4 2 1 37 37 H 1.08997 * 109.47532 * 300.00420 * 8 6 5 38 38 H 1.09010 * 109.46929 * 60.00222 * 8 6 5 39 39 H 1.07999 * 119.92986 * 0.02562 * 10 9 8 40 40 H 1.07997 * 119.96701 * 180.25296 * 11 10 9 41 41 H 1.08005 * 120.02976 * 179.71914 * 12 11 10 42 42 H 0.97002 * 119.99963 * 179.97438 * 18 17 15 43 43 H 1.07999 * 120.02999 * 0.02562 * 23 9 8 44 44 H 1.09001 * 109.58544 * 293.82366 * 24 5 4 45 45 H 1.09002 * 109.70810 * 173.46935 * 24 5 4 46 46 H 1.09003 * 109.49524 * 65.31503 * 25 24 5 47 47 H 1.09001 * 109.50014 * 185.38480 * 25 24 5 48 48 H 0.96704 * 113.99897 * 59.99666 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0412 -0.7233 1.2499 5 7 3.5045 -0.8287 1.1699 6 6 4.2810 -0.3856 2.1786 7 8 3.7730 0.1061 3.1639 8 6 5.7804 -0.5013 2.0819 9 6 6.4092 0.0619 3.3302 10 6 6.7531 1.4005 3.3871 11 6 7.3257 1.9222 4.5326 12 6 7.5660 1.1050 5.6200 13 6 7.2268 -0.2403 5.5640 14 8 7.4622 -1.0461 6.6310 15 6 8.1306 -0.5062 7.6700 16 1 8.3808 0.5444 7.6639 17 6 8.4966 -1.2998 8.7464 18 7 9.1493 -0.7732 9.7601 19 14 8.0632 -3.1168 8.7574 20 1 9.1638 -3.8920 8.1304 21 1 7.8727 -3.5719 10.1580 22 1 6.8085 -3.3310 7.9923 23 6 6.6468 -0.7601 4.4140 24 6 4.1052 -1.4267 -0.0301 25 6 3.5709 -0.6955 -1.2656 26 6 2.0408 -0.7235 -1.2489 27 1 1.6967 -1.7577 -1.2355 28 8 1.5398 -0.0705 -2.4170 29 1 -0.3634 0.5130 0.8905 30 1 -0.3633 0.5148 -0.8895 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1307 1.4418 -0.0005 33 1 1.6767 1.9565 -0.8894 34 1 1.6785 1.9560 0.8905 35 1 1.6052 -1.7212 1.2987 36 1 1.7636 -0.1594 2.1404 37 1 6.0580 -1.5501 1.9771 38 1 6.1326 0.0562 1.2139 39 1 6.5700 2.0405 2.5367 40 1 7.5894 2.9686 4.5755 41 1 8.0175 1.5121 6.5127 42 1 9.4050 -1.3283 10.5133 43 1 6.3826 -1.8062 4.3671 44 1 3.8374 -2.4819 -0.0857 45 1 5.1898 -1.3268 0.0130 46 1 3.9159 0.3384 -1.2540 47 1 3.9339 -1.1902 -2.1665 48 1 1.8237 -0.4771 -3.2472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275910011.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:31 Heat of formation + Delta-G solvation = -90.106681 kcal Electronic energy + Delta-G solvation = -28938.987923 eV Core-core repulsion = 24959.478692 eV Total energy + Delta-G solvation = -3979.509231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.84777 -39.30675 -38.54790 -36.65066 -35.95213 -34.48423 -32.39418 -32.05559 -31.52980 -29.44208 -28.00902 -27.54765 -26.36149 -25.22788 -24.80633 -22.83940 -21.78673 -20.97915 -19.54388 -18.82685 -17.79839 -17.67036 -17.16454 -17.01556 -15.97941 -15.77467 -15.32123 -15.15634 -14.81613 -14.71554 -14.16104 -14.00057 -13.86236 -13.65534 -13.61436 -13.46852 -13.36060 -12.63573 -12.54364 -12.40795 -12.34940 -12.25452 -12.10161 -12.01204 -11.84918 -11.68687 -11.29883 -11.26845 -11.17331 -10.81436 -10.77017 -10.68985 -10.58395 -10.26662 -10.12411 -9.72012 -9.34829 -8.83233 -8.82105 -8.10439 -7.31491 -6.36963 -4.03531 2.04085 2.32891 2.67380 2.86324 3.24940 3.27792 3.43914 3.75861 4.15419 4.23414 4.27709 4.44978 4.51397 4.59914 4.75194 4.76717 4.80310 4.94431 4.97265 5.08260 5.14638 5.18017 5.24445 5.28425 5.36677 5.38541 5.51165 5.56802 5.57071 5.62361 5.71073 5.71508 5.76648 5.87586 5.88801 5.99663 6.13475 6.15951 6.28946 6.33202 6.56957 6.82882 7.13847 7.22322 7.24422 7.25568 7.36240 7.65013 7.85444 8.08927 8.21217 8.98655 9.61947 10.70927 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022077 B = 0.002449 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.984758 B =11431.794425 C =11831.213861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.070 4.070 3 C -0.135 4.135 4 C 0.121 3.879 5 N -0.620 5.620 6 C 0.518 3.482 7 O -0.515 6.515 8 C -0.093 4.093 9 C -0.035 4.035 10 C -0.188 4.188 11 C -0.076 4.076 12 C -0.217 4.217 13 C 0.161 3.839 14 O -0.219 6.219 15 C -0.388 4.388 16 H 0.106 0.894 17 C 0.062 3.938 18 N -0.882 5.882 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.174 4.174 24 C 0.109 3.891 25 C -0.172 4.172 26 C 0.117 3.883 27 H 0.055 0.945 28 O -0.561 6.561 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.279 0.721 43 H 0.113 0.887 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.818 -1.447 -26.290 29.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.071 4.071 3 C -0.192 4.192 4 C -0.002 4.002 5 N -0.356 5.356 6 C 0.306 3.694 7 O -0.389 6.389 8 C -0.133 4.133 9 C -0.036 4.036 10 C -0.207 4.207 11 C -0.094 4.094 12 C -0.237 4.237 13 C 0.109 3.891 14 O -0.125 6.125 15 C -0.463 4.463 16 H 0.123 0.877 17 C -0.140 4.140 18 N -0.520 5.520 19 Si 0.730 3.270 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.184 1.184 23 C -0.194 4.194 24 C -0.014 4.014 25 C -0.210 4.210 26 C 0.058 3.942 27 H 0.073 0.927 28 O -0.366 6.366 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.150 0.850 42 H 0.089 0.911 43 H 0.131 0.869 44 H 0.088 0.912 45 H 0.110 0.890 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -13.311 -1.066 -24.989 28.333 hybrid contribution 0.270 -1.072 -0.308 1.147 sum -13.042 -2.137 -25.297 28.541 Atomic orbital electron populations 1.21742 0.93249 1.01875 1.02546 1.20918 0.96477 0.96731 0.92931 1.21786 1.01111 0.94351 1.01927 1.21662 0.79627 1.00477 0.98393 1.48130 1.06443 1.62419 1.18578 1.20754 0.89335 0.77189 0.82120 1.90754 1.75176 1.42647 1.30324 1.20624 0.91116 1.03211 0.98304 1.18663 0.98057 0.93671 0.93218 1.20407 1.07077 0.94350 0.98819 1.20733 0.97332 0.98468 0.92857 1.21295 1.07982 0.93830 1.00546 1.19002 0.93302 0.89713 0.87093 1.83570 1.67084 1.38485 1.23346 1.20763 1.33626 0.97143 0.94817 0.87658 1.24453 0.95381 0.99999 0.94197 1.69650 1.37439 1.37162 1.07752 0.86190 0.80112 0.83275 0.77382 1.19932 1.20824 1.18376 1.19927 1.07716 0.99580 0.92135 1.21664 0.99061 0.96943 0.83746 1.22744 0.97001 1.02896 0.98405 1.21759 0.91717 0.95023 0.85709 0.92702 1.86532 1.75652 1.58743 1.15720 0.92341 0.91419 0.92777 0.92528 0.91987 0.92645 0.91600 0.88206 0.88333 0.88413 0.87806 0.87184 0.84990 0.91132 0.86891 0.91190 0.88989 0.90001 0.90448 0.77787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.32 37.15 0.31 -0.75 16 2 C -0.07 -0.58 0.60 -154.36 -0.09 -0.68 16 3 C -0.13 -1.30 7.85 37.16 0.29 -1.01 16 4 C 0.12 1.20 5.11 -3.71 -0.02 1.18 16 5 N -0.62 -6.36 2.41 -172.77 -0.42 -6.77 16 6 C 0.52 7.25 7.69 -10.98 -0.08 7.17 16 7 O -0.52 -9.73 15.45 5.56 0.09 -9.64 16 8 C -0.09 -1.17 4.18 -29.04 -0.12 -1.29 16 9 C -0.04 -0.62 4.37 -104.65 -0.46 -1.08 16 10 C -0.19 -3.31 9.70 -39.53 -0.38 -3.69 16 11 C -0.08 -1.45 10.04 -39.61 -0.40 -1.84 16 12 C -0.22 -4.91 9.17 -39.40 -0.36 -5.28 16 13 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 14 O -0.22 -5.99 8.59 0.03 0.00 -5.99 16 15 C -0.39 -11.22 9.95 30.89 0.31 -10.91 16 16 H 0.11 3.11 5.44 -52.49 -0.29 2.82 16 17 C 0.06 1.79 5.49 -17.51 -0.10 1.70 16 18 N -0.88 -25.94 13.96 55.48 0.77 -25.17 16 19 Si 0.90 22.14 28.62 -169.99 -4.86 17.28 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.26 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.17 -3.62 9.65 -39.40 -0.38 -4.00 16 24 C 0.11 0.72 6.34 -3.72 -0.02 0.70 16 25 C -0.17 -0.97 5.36 -26.61 -0.14 -1.11 16 26 C 0.12 0.77 2.56 -26.65 -0.07 0.70 16 27 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 28 O -0.56 -3.71 12.00 -35.23 -0.42 -4.13 16 29 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 30 H 0.07 0.56 7.66 -51.92 -0.40 0.16 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.58 5.97 -51.93 -0.31 0.27 16 33 H 0.06 0.59 7.73 -51.93 -0.40 0.19 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 1.22 7.00 -51.93 -0.36 0.86 16 37 H 0.10 1.03 7.88 -51.93 -0.41 0.63 16 38 H 0.10 0.95 7.64 -51.92 -0.40 0.55 16 39 H 0.10 1.55 8.06 -52.49 -0.42 1.12 16 40 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.13 3.11 5.64 -52.48 -0.30 2.81 16 42 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.11 2.21 8.06 -52.49 -0.42 1.78 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.51 5.95 -51.93 -0.31 0.20 16 46 H 0.08 0.57 6.34 -51.93 -0.33 0.24 16 47 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.38 0.98 9.08 45.56 0.41 1.40 16 LS Contribution 381.17 15.07 5.74 5.74 Total: -1.00 -34.52 381.17 -7.53 -42.04 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.45 Total: 3.24 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -1.98 Total: -16.59 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.36 Total: -31.94 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.34 Total: -19.77 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.86 Total: 17.28 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.52 -7.53 -42.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275910011.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.066 kcal (2) G-P(sol) polarization free energy of solvation -34.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds