Wall clock time and date at job start Tue Mar 31 2020 18:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.50078 * 2 1 4 4 C 1.53197 * 109.49599 * 120.05857 * 2 1 3 5 5 N 1.46921 * 108.77485 * 174.58441 * 4 2 1 6 6 C 1.34786 * 120.62839 * 126.41521 * 5 4 2 7 7 O 1.21275 * 119.99718 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99891 * 179.97438 * 6 5 4 9 9 C 1.50697 * 109.47115 * 180.02562 * 8 6 5 10 10 C 1.38331 * 119.96274 * 269.72413 * 9 8 6 11 11 C 1.38279 * 120.13528 * 179.76065 * 10 9 8 12 12 C 1.38125 * 120.06751 * 0.52083 * 11 10 9 13 13 C 1.38851 * 119.93125 * 359.73486 * 12 11 10 14 14 O 1.35759 * 120.06825 * 179.97438 * 13 12 11 15 15 C 1.34826 * 116.99639 * 354.48888 * 14 13 12 16 16 H 1.07996 * 120.00252 * 5.05877 * 15 14 13 17 17 C 1.38654 * 119.99640 * 185.05944 * 15 14 13 18 18 N 1.31559 * 120.00072 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00275 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46977 * 89.99973 * 19 17 15 21 21 H 1.48493 * 109.47441 * 210.00153 * 19 17 15 22 22 H 1.48506 * 109.46850 * 330.00184 * 19 17 15 23 23 C 1.38081 * 119.96766 * 90.00008 * 9 8 6 24 24 C 1.46920 * 118.74310 * 306.39475 * 5 4 2 25 25 C 1.53189 * 108.77792 * 53.60732 * 24 5 4 26 26 C 1.53047 * 109.33984 * 305.35464 * 25 24 5 27 27 H 1.09007 * 109.45181 * 301.35659 * 26 25 24 28 28 O 1.42897 * 109.46166 * 181.40078 * 26 25 24 29 29 H 1.09008 * 109.47460 * 299.94487 * 1 2 3 30 30 H 1.09007 * 109.47031 * 59.93983 * 1 2 3 31 31 H 1.09001 * 109.47537 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47526 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46745 * 300.06316 * 3 2 1 34 34 H 1.08999 * 109.47399 * 60.05850 * 3 2 1 35 35 H 1.09004 * 109.58435 * 54.80311 * 4 2 1 36 36 H 1.09000 * 109.70827 * 294.44588 * 4 2 1 37 37 H 1.08997 * 109.47532 * 300.00420 * 8 6 5 38 38 H 1.09010 * 109.46929 * 60.00222 * 8 6 5 39 39 H 1.07999 * 119.92986 * 0.02562 * 10 9 8 40 40 H 1.07997 * 119.96701 * 180.25296 * 11 10 9 41 41 H 1.08005 * 120.02976 * 179.71914 * 12 11 10 42 42 H 0.97002 * 119.99963 * 179.97438 * 18 17 15 43 43 H 1.07999 * 120.02999 * 0.02562 * 23 9 8 44 44 H 1.09001 * 109.58544 * 293.82366 * 24 5 4 45 45 H 1.09002 * 109.70810 * 173.46935 * 24 5 4 46 46 H 1.09003 * 109.49524 * 65.31503 * 25 24 5 47 47 H 1.09001 * 109.50014 * 185.38480 * 25 24 5 48 48 H 0.96704 * 113.99897 * 59.99666 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0412 -0.7233 1.2499 5 7 3.5045 -0.8287 1.1699 6 6 4.2810 -0.3856 2.1786 7 8 3.7730 0.1061 3.1639 8 6 5.7804 -0.5013 2.0819 9 6 6.4092 0.0619 3.3302 10 6 6.7531 1.4005 3.3871 11 6 7.3257 1.9222 4.5326 12 6 7.5660 1.1050 5.6200 13 6 7.2268 -0.2403 5.5640 14 8 7.4622 -1.0461 6.6310 15 6 8.1306 -0.5062 7.6700 16 1 8.3808 0.5444 7.6639 17 6 8.4966 -1.2998 8.7464 18 7 9.1493 -0.7732 9.7601 19 14 8.0632 -3.1168 8.7574 20 1 9.1638 -3.8920 8.1304 21 1 7.8727 -3.5719 10.1580 22 1 6.8085 -3.3310 7.9923 23 6 6.6468 -0.7601 4.4140 24 6 4.1052 -1.4267 -0.0301 25 6 3.5709 -0.6955 -1.2656 26 6 2.0408 -0.7235 -1.2489 27 1 1.6967 -1.7577 -1.2355 28 8 1.5398 -0.0705 -2.4170 29 1 -0.3634 0.5130 0.8905 30 1 -0.3633 0.5148 -0.8895 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1307 1.4418 -0.0005 33 1 1.6767 1.9565 -0.8894 34 1 1.6785 1.9560 0.8905 35 1 1.6052 -1.7212 1.2987 36 1 1.7636 -0.1594 2.1404 37 1 6.0580 -1.5501 1.9771 38 1 6.1326 0.0562 1.2139 39 1 6.5700 2.0405 2.5367 40 1 7.5894 2.9686 4.5755 41 1 8.0175 1.5121 6.5127 42 1 9.4050 -1.3283 10.5133 43 1 6.3826 -1.8062 4.3671 44 1 3.8374 -2.4819 -0.0857 45 1 5.1898 -1.3268 0.0130 46 1 3.9159 0.3384 -1.2540 47 1 3.9339 -1.1902 -2.1665 48 1 1.8237 -0.4771 -3.2472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275910011.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:30 Heat of formation + Delta-G solvation = -113.738436 kcal Electronic energy + Delta-G solvation = -28940.012673 eV Core-core repulsion = 24959.478692 eV Total energy + Delta-G solvation = -3980.533981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.68718 -40.85363 -39.62988 -38.25778 -36.67050 -35.20000 -34.48134 -33.43627 -32.13011 -31.10654 -29.19788 -28.26166 -27.40225 -26.99550 -25.66511 -23.40383 -23.36649 -22.55637 -20.60248 -19.65902 -19.46635 -18.80830 -18.38120 -17.91482 -16.95668 -16.89912 -16.76612 -16.29434 -15.95659 -15.77002 -15.65961 -15.27468 -15.06509 -14.86499 -14.61763 -14.37193 -14.34663 -14.15845 -14.06625 -13.92416 -13.17580 -13.07238 -13.02123 -12.91070 -12.83209 -12.65252 -12.55265 -12.44168 -12.42183 -12.33194 -11.97914 -11.93899 -11.84355 -11.32240 -11.16139 -10.94149 -10.86938 -10.64419 -9.67224 -9.64428 -9.07319 -8.50729 -6.23596 0.47609 0.69174 1.29183 1.33949 1.50750 1.65885 2.00683 2.27478 2.76298 3.03973 3.11361 3.30005 3.54484 3.68244 3.77454 3.93045 3.94664 4.06134 4.09021 4.26181 4.27532 4.33195 4.39298 4.44009 4.53820 4.58125 4.66167 4.69040 4.69741 4.76547 4.77296 4.83793 4.91629 4.94636 4.97072 5.03715 5.19165 5.21004 5.24260 5.35894 5.38600 5.45145 5.58004 5.63810 5.71563 5.75995 5.90644 6.23134 6.40593 6.83473 6.99265 7.22457 7.58219 8.61129 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022077 B = 0.002449 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.984758 B =11431.794425 C =11831.213861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.068 4.068 3 C -0.129 4.129 4 C 0.120 3.880 5 N -0.610 5.610 6 C 0.514 3.486 7 O -0.579 6.579 8 C -0.089 4.089 9 C -0.027 4.027 10 C -0.171 4.171 11 C -0.078 4.078 12 C -0.241 4.241 13 C 0.120 3.880 14 O -0.246 6.246 15 C -0.400 4.400 16 H 0.079 0.921 17 C 0.009 3.991 18 N -0.924 5.924 19 Si 0.972 3.028 20 H -0.261 1.261 21 H -0.266 1.266 22 H -0.267 1.267 23 C -0.180 4.180 24 C 0.099 3.901 25 C -0.165 4.165 26 C 0.120 3.880 27 H 0.069 0.931 28 O -0.577 6.577 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.035 0.965 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.128 0.872 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.107 0.893 42 H 0.285 0.715 43 H 0.122 0.878 44 H 0.091 0.909 45 H 0.111 0.889 46 H 0.069 0.931 47 H 0.109 0.891 48 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.513 -3.046 -30.881 33.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.069 4.069 3 C -0.187 4.187 4 C -0.003 4.003 5 N -0.343 5.343 6 C 0.304 3.696 7 O -0.458 6.458 8 C -0.128 4.128 9 C -0.028 4.028 10 C -0.190 4.190 11 C -0.096 4.096 12 C -0.260 4.260 13 C 0.071 3.929 14 O -0.154 6.154 15 C -0.476 4.476 16 H 0.097 0.903 17 C -0.189 4.189 18 N -0.565 5.565 19 Si 0.794 3.206 20 H -0.185 1.185 21 H -0.191 1.191 22 H -0.192 1.192 23 C -0.199 4.199 24 C -0.022 4.022 25 C -0.203 4.203 26 C 0.061 3.939 27 H 0.086 0.914 28 O -0.385 6.385 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.146 0.854 38 H 0.157 0.843 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.125 0.875 42 H 0.094 0.906 43 H 0.140 0.860 44 H 0.109 0.891 45 H 0.129 0.871 46 H 0.088 0.912 47 H 0.127 0.873 48 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -14.011 -2.669 -29.682 32.931 hybrid contribution 0.352 -0.389 0.778 0.939 sum -13.658 -3.058 -28.904 32.115 Atomic orbital electron populations 1.21711 0.93033 1.02462 1.01939 1.20878 0.96667 0.95833 0.93560 1.21725 1.00729 0.95318 1.00884 1.21660 0.79734 1.00983 0.97934 1.48173 1.06384 1.60924 1.18822 1.20966 0.90007 0.76672 0.81995 1.90748 1.76225 1.45892 1.32924 1.20742 0.89782 1.05444 0.96840 1.19222 0.96044 0.93456 0.94088 1.20985 1.03999 0.94913 0.99081 1.21101 0.96707 0.99574 0.92194 1.21318 1.09299 0.94174 1.01224 1.19586 0.95223 0.90415 0.87694 1.83507 1.68749 1.39163 1.24015 1.20711 1.34381 0.96422 0.96125 0.90323 1.25295 0.95364 1.04583 0.93679 1.69734 1.39174 1.38941 1.08644 0.85204 0.79616 0.77758 0.78023 1.18545 1.19098 1.19167 1.20260 1.07092 1.00719 0.91869 1.22058 1.00065 0.97902 0.82182 1.22703 0.96035 1.02426 0.99171 1.21685 0.92410 0.95063 0.84737 0.91356 1.86492 1.75995 1.59361 1.16646 0.93224 0.91740 0.91589 0.92914 0.92025 0.94605 0.90067 0.91393 0.85413 0.84253 0.83681 0.84272 0.87518 0.90555 0.85989 0.89121 0.87127 0.91234 0.87317 0.75626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.32 71.98 0.60 -1.30 16 2 C -0.07 -1.01 0.60 -52.08 -0.03 -1.04 16 3 C -0.13 -2.36 7.85 71.98 0.57 -1.79 16 4 C 0.12 2.18 5.11 86.36 0.44 2.62 16 5 N -0.61 -10.62 2.41 -818.91 -1.97 -12.60 16 6 C 0.51 13.09 7.69 87.66 0.67 13.77 16 7 O -0.58 -21.62 15.45 -3.01 -0.05 -21.67 16 8 C -0.09 -1.85 4.18 29.10 0.12 -1.73 16 9 C -0.03 -0.90 4.37 -19.88 -0.09 -0.98 16 10 C -0.17 -5.53 9.70 22.30 0.22 -5.31 16 11 C -0.08 -2.91 10.04 22.25 0.22 -2.68 16 12 C -0.24 -11.40 9.17 22.39 0.21 -11.20 16 13 C 0.12 6.00 6.65 22.57 0.15 6.15 16 14 O -0.25 -14.15 8.59 -22.80 -0.20 -14.34 16 15 C -0.40 -24.64 9.95 67.92 0.68 -23.97 16 16 H 0.08 5.08 5.44 -2.91 -0.02 5.07 16 17 C 0.01 0.53 5.49 84.83 0.47 1.00 16 18 N -0.92 -56.75 13.96 21.61 0.30 -56.45 16 19 Si 0.97 46.92 28.62 68.60 1.96 48.88 16 20 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 23 C -0.18 -7.42 9.65 22.39 0.22 -7.20 16 24 C 0.10 0.80 6.34 86.36 0.55 1.35 16 25 C -0.17 -1.06 5.36 30.67 0.16 -0.90 16 26 C 0.12 1.12 2.56 30.64 0.08 1.20 16 27 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 28 O -0.58 -5.61 12.00 -148.98 -1.79 -7.40 16 29 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.06 0.97 7.66 -2.38 -0.02 0.95 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.98 5.97 -2.39 -0.01 0.97 16 33 H 0.06 1.11 7.73 -2.39 -0.02 1.09 16 34 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.70 7.00 -2.39 -0.02 1.68 16 37 H 0.13 1.99 7.88 -2.39 -0.02 1.97 16 38 H 0.14 1.80 7.64 -2.38 -0.02 1.78 16 39 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 40 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 41 H 0.11 5.50 5.64 -2.91 -0.02 5.48 16 42 H 0.28 15.99 8.31 -92.71 -0.77 15.21 16 43 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 44 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.11 0.52 5.95 -2.39 -0.01 0.51 16 46 H 0.07 0.67 6.34 -2.39 -0.02 0.66 16 47 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 48 H 0.39 0.47 9.08 -74.05 -0.67 -0.21 16 Total: -1.00 -82.13 381.17 3.79 -78.34 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.31 Total: 17.27 kcal Atomic # 6 Polarization: -37.25 SS G_CDS: 5.23 Total: -32.03 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -1.67 Total: -69.05 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -2.03 Total: -43.41 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.96 Total: 48.88 kcal Total: -82.13 3.79 -78.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275910011.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.400 kcal (2) G-P(sol) polarization free energy of solvation -82.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds