Wall clock time and date at job start Tue Mar 31 2020 18:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.52347 * 2 1 4 4 C 1.53184 * 109.49938 * 120.08480 * 2 1 3 5 5 N 1.46924 * 108.77844 * 65.31431 * 4 2 1 6 6 C 1.34779 * 120.63208 * 233.58291 * 5 4 2 7 7 O 1.21273 * 120.00065 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99778 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.47089 * 180.02562 * 8 6 5 10 10 C 1.38322 * 119.96731 * 269.98271 * 9 8 6 11 11 C 1.38278 * 120.13646 * 179.97438 * 10 9 8 12 12 C 1.38118 * 120.07168 * 0.02562 * 11 10 9 13 13 C 1.38858 * 119.93004 * 359.78497 * 12 11 10 14 14 O 1.35746 * 120.07005 * 180.25802 * 13 12 11 15 15 C 1.34828 * 117.00187 * 354.66396 * 14 13 12 16 16 H 1.08005 * 120.00113 * 5.07388 * 15 14 13 17 17 C 1.38658 * 120.00325 * 185.07349 * 15 14 13 18 18 N 1.31559 * 119.99957 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99649 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47154 * 89.99927 * 19 17 15 21 21 H 1.48508 * 109.46936 * 209.99827 * 19 17 15 22 22 H 1.48500 * 109.47349 * 329.99390 * 19 17 15 23 23 C 1.38077 * 119.96057 * 90.00229 * 9 8 6 24 24 C 1.46932 * 118.73695 * 53.86367 * 5 4 2 25 25 C 1.53628 * 108.53995 * 306.09188 * 24 5 4 26 26 C 1.53038 * 109.49608 * 239.92235 * 2 1 3 27 27 H 1.09004 * 109.46333 * 181.40555 * 26 2 1 28 28 O 1.42905 * 109.46413 * 61.43390 * 26 2 1 29 29 H 1.08995 * 109.46910 * 299.91725 * 1 2 3 30 30 H 1.08992 * 109.47168 * 59.91641 * 1 2 3 31 31 H 1.09001 * 109.46755 * 179.91892 * 1 2 3 32 32 H 1.08994 * 109.47122 * 180.08494 * 3 2 1 33 33 H 1.09002 * 109.46877 * 300.08446 * 3 2 1 34 34 H 1.08999 * 109.47184 * 60.08175 * 3 2 1 35 35 H 1.09005 * 109.58462 * 305.52500 * 4 2 1 36 36 H 1.09006 * 109.70729 * 185.17537 * 4 2 1 37 37 H 1.08998 * 109.46973 * 60.00648 * 8 6 5 38 38 H 1.08996 * 109.47400 * 300.00529 * 8 6 5 39 39 H 1.07998 * 119.93357 * 0.02562 * 10 9 8 40 40 H 1.08005 * 119.96139 * 180.02562 * 11 10 9 41 41 H 1.08004 * 120.03421 * 180.02562 * 12 11 10 42 42 H 0.97001 * 119.99831 * 180.02562 * 18 17 15 43 43 H 1.08000 * 120.04009 * 359.95629 * 23 9 8 44 44 H 1.08995 * 109.58821 * 65.92350 * 24 5 4 45 45 H 1.08994 * 109.58366 * 186.35193 * 24 5 4 46 46 H 1.08993 * 109.63340 * 294.86863 * 25 24 5 47 47 H 1.08998 * 109.42668 * 174.72569 * 25 24 5 48 48 H 0.96698 * 114.00255 * 179.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0414 -0.7238 1.2495 5 7 1.6516 -2.1382 1.1695 6 6 0.9749 -2.7222 2.1782 7 8 0.6817 -2.0793 3.1638 8 6 0.5818 -4.1737 2.0809 9 6 -0.1595 -4.5782 3.3291 10 6 0.5366 -5.0789 4.4144 11 6 -0.1399 -5.4506 5.5616 12 6 -1.5137 -5.3233 5.6269 13 6 -2.2150 -4.8173 4.5405 14 8 -3.5646 -4.6860 4.6035 15 6 -4.1757 -5.1670 5.7048 16 1 -3.5871 -5.5567 6.5223 17 6 -5.5597 -5.1614 5.7881 18 7 -6.1559 -5.6303 6.8631 19 14 -6.5777 -4.4881 4.3740 20 1 -6.8874 -5.5842 3.4212 21 1 -7.8436 -3.9191 4.9024 22 1 -5.8116 -3.4256 3.6744 23 6 -1.5329 -4.4488 3.3879 24 6 2.0190 -2.9055 -0.0285 25 6 1.5030 -2.1557 -1.2661 26 6 2.0408 -0.7230 -1.2484 27 1 3.1305 -0.7446 -1.2353 28 8 1.5924 -0.0317 -2.4159 29 1 -0.3633 0.5125 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0015 32 1 3.1313 1.4411 -0.0015 33 1 1.6772 1.9566 -0.8893 34 1 1.6797 1.9558 0.8907 35 1 1.6008 -0.2731 2.1388 36 1 3.1275 -0.6464 1.3005 37 1 1.4771 -4.7863 1.9751 38 1 -0.0620 -4.3184 1.2134 39 1 1.6109 -5.1791 4.3660 40 1 0.4065 -5.8409 6.4076 41 1 -2.0415 -5.6134 6.5234 42 1 -7.1242 -5.6268 6.9212 43 1 -2.0759 -4.0574 2.5403 44 1 3.1033 -3.0022 -0.0822 45 1 1.5637 -3.8947 0.0174 46 1 0.4133 -2.1354 -1.2541 47 1 1.8481 -2.6628 -2.1672 48 1 1.8799 -0.4349 -3.2465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275910014.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:36 Heat of formation + Delta-G solvation = -89.967111 kcal Electronic energy + Delta-G solvation = -29058.790835 eV Core-core repulsion = 25079.287656 eV Total energy + Delta-G solvation = -3979.503179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.83088 -39.30100 -38.54010 -36.64770 -35.93358 -34.45823 -32.39273 -32.05395 -31.49257 -29.43891 -28.00327 -27.50479 -26.34810 -25.22308 -24.79727 -22.82961 -21.78672 -20.97295 -19.53475 -18.80841 -17.77464 -17.67078 -17.15505 -17.00868 -15.97885 -15.75800 -15.29356 -15.15977 -14.81067 -14.67642 -14.20316 -13.94605 -13.81878 -13.69773 -13.55712 -13.46476 -13.36233 -12.62157 -12.52153 -12.41120 -12.32759 -12.23331 -12.09444 -11.97646 -11.83036 -11.68303 -11.27147 -11.26432 -11.13887 -10.81145 -10.76859 -10.68667 -10.56091 -10.24154 -10.12013 -9.71732 -9.34630 -8.83036 -8.81765 -8.10432 -7.31328 -6.36889 -4.03436 2.04128 2.32960 2.67446 2.86928 3.25287 3.28174 3.44421 3.78803 4.17337 4.25824 4.28016 4.45674 4.52905 4.61607 4.75045 4.78987 4.81164 4.96630 4.98250 5.07978 5.14558 5.16380 5.27377 5.32360 5.34601 5.40918 5.54991 5.56005 5.58822 5.65487 5.71691 5.74947 5.80681 5.87744 5.92576 6.02774 6.15926 6.20053 6.29141 6.33965 6.57055 6.82947 7.13917 7.24509 7.25441 7.25821 7.36285 7.65130 7.85504 8.09058 8.21414 8.98803 9.62129 10.71038 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.002802 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.515590 B = 9989.370284 C =10994.851781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.070 4.070 3 C -0.136 4.136 4 C 0.122 3.878 5 N -0.620 5.620 6 C 0.518 3.482 7 O -0.515 6.515 8 C -0.093 4.093 9 C -0.035 4.035 10 C -0.188 4.188 11 C -0.076 4.076 12 C -0.218 4.218 13 C 0.161 3.839 14 O -0.219 6.219 15 C -0.388 4.388 16 H 0.106 0.894 17 C 0.063 3.937 18 N -0.882 5.882 19 Si 0.904 3.096 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.260 1.260 23 C -0.174 4.174 24 C 0.110 3.890 25 C -0.173 4.173 26 C 0.117 3.883 27 H 0.054 0.946 28 O -0.561 6.561 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.279 0.721 43 H 0.113 0.887 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.077 0.923 48 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.187 7.119 -19.103 28.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.071 4.071 3 C -0.194 4.194 4 C -0.001 4.001 5 N -0.356 5.356 6 C 0.306 3.694 7 O -0.389 6.389 8 C -0.133 4.133 9 C -0.036 4.036 10 C -0.207 4.207 11 C -0.094 4.094 12 C -0.237 4.237 13 C 0.109 3.891 14 O -0.125 6.125 15 C -0.464 4.464 16 H 0.123 0.877 17 C -0.140 4.140 18 N -0.520 5.520 19 Si 0.730 3.270 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.184 1.184 23 C -0.194 4.194 24 C -0.014 4.014 25 C -0.211 4.211 26 C 0.058 3.942 27 H 0.072 0.928 28 O -0.366 6.366 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.150 0.850 42 H 0.089 0.911 43 H 0.131 0.869 44 H 0.088 0.912 45 H 0.110 0.890 46 H 0.101 0.899 47 H 0.095 0.905 48 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 19.351 7.909 -18.117 27.663 hybrid contribution -0.203 -0.273 -0.861 0.925 sum 19.149 7.636 -18.977 28.020 Atomic orbital electron populations 1.21798 0.93270 1.02210 1.02035 1.20908 0.97435 0.95825 0.92908 1.21737 1.00504 0.94542 1.02596 1.21655 0.99238 0.80731 0.98484 1.48143 1.57715 1.11062 1.18685 1.20753 0.76877 0.89615 0.82169 1.90753 1.52691 1.64991 1.30468 1.20623 1.01380 0.92718 0.98536 1.18661 0.92386 0.98656 0.93909 1.20404 0.98220 1.07633 0.94412 1.20733 0.93808 0.98010 0.96855 1.21295 0.94417 1.07645 1.00313 1.19004 0.83912 0.93141 0.93035 1.83568 1.15311 1.71062 1.42530 1.20766 0.90978 1.40580 0.94034 0.87655 1.24450 0.95729 0.96153 0.97661 1.69649 1.10685 1.44408 1.27274 0.86198 0.79026 0.80126 0.81664 1.19917 1.20798 1.18370 1.19929 0.93037 1.08940 0.97447 1.21761 1.00234 0.95566 0.83797 1.22825 1.03365 0.96596 0.98346 1.21744 0.96561 0.90094 0.85762 0.92761 1.86542 1.78891 1.55459 1.15708 0.92573 0.91940 0.92462 0.92830 0.91403 0.92337 0.88243 0.91640 0.88372 0.88381 0.87780 0.87180 0.84989 0.91125 0.86922 0.91195 0.88997 0.89883 0.90479 0.77805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 7.85 37.16 0.29 -1.17 16 2 C -0.07 -0.61 0.60 -154.39 -0.09 -0.71 16 3 C -0.14 -1.10 8.32 37.16 0.31 -0.79 16 4 C 0.12 1.20 5.11 -3.72 -0.02 1.18 16 5 N -0.62 -6.36 2.41 -172.50 -0.41 -6.78 16 6 C 0.52 7.25 7.69 -10.98 -0.08 7.17 16 7 O -0.52 -9.74 15.45 5.56 0.09 -9.65 16 8 C -0.09 -1.17 4.17 -29.04 -0.12 -1.29 16 9 C -0.04 -0.62 4.37 -104.65 -0.46 -1.08 16 10 C -0.19 -3.30 9.70 -39.54 -0.38 -3.69 16 11 C -0.08 -1.45 10.04 -39.61 -0.40 -1.84 16 12 C -0.22 -4.92 9.17 -39.40 -0.36 -5.28 16 13 C 0.16 3.89 6.65 -39.10 -0.26 3.63 16 14 O -0.22 -6.01 8.59 0.07 0.00 -6.01 16 15 C -0.39 -11.24 9.95 30.89 0.31 -10.94 16 16 H 0.11 3.11 5.44 -52.48 -0.29 2.83 16 17 C 0.06 1.81 5.49 -17.51 -0.10 1.71 16 18 N -0.88 -26.00 13.96 55.48 0.77 -25.23 16 19 Si 0.90 22.22 28.62 -169.99 -4.86 17.36 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.26 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.17 -3.63 9.65 -39.39 -0.38 -4.01 16 24 C 0.11 0.72 6.37 -3.48 -0.02 0.70 16 25 C -0.17 -1.05 5.38 -26.38 -0.14 -1.19 16 26 C 0.12 0.81 2.56 -26.69 -0.07 0.74 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 O -0.56 -3.98 11.99 -35.23 -0.42 -4.40 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.67 7.73 -51.93 -0.40 0.27 16 31 H 0.06 0.66 5.97 -51.93 -0.31 0.35 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.59 7.65 -51.93 -0.40 0.19 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 1.23 7.01 -51.93 -0.36 0.86 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.94 7.87 -51.93 -0.41 0.53 16 38 H 0.10 1.04 7.65 -51.93 -0.40 0.65 16 39 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 41 H 0.13 3.11 5.64 -52.48 -0.30 2.81 16 42 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.11 2.22 8.06 -52.49 -0.42 1.80 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.09 0.51 5.93 -51.93 -0.31 0.21 16 46 H 0.08 0.65 6.33 -51.93 -0.33 0.32 16 47 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.38 1.14 9.08 45.56 0.41 1.55 16 LS Contribution 381.16 15.07 5.74 5.74 Total: -1.00 -34.61 381.16 -7.52 -42.13 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.45 Total: 3.69 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -1.98 Total: -16.86 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 0.36 Total: -32.00 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.34 Total: -20.06 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.86 Total: 17.36 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.61 -7.52 -42.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275910014.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.838 kcal (2) G-P(sol) polarization free energy of solvation -34.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds