Wall clock time and date at job start Tue Mar 31 2020 18:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.52347 * 2 1 4 4 C 1.53184 * 109.49938 * 120.08480 * 2 1 3 5 5 N 1.46924 * 108.77844 * 65.31431 * 4 2 1 6 6 C 1.34779 * 120.63208 * 233.58291 * 5 4 2 7 7 O 1.21273 * 120.00065 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99778 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.47089 * 180.02562 * 8 6 5 10 10 C 1.38322 * 119.96731 * 269.98271 * 9 8 6 11 11 C 1.38278 * 120.13646 * 179.97438 * 10 9 8 12 12 C 1.38118 * 120.07168 * 0.02562 * 11 10 9 13 13 C 1.38858 * 119.93004 * 359.78497 * 12 11 10 14 14 O 1.35746 * 120.07005 * 180.25802 * 13 12 11 15 15 C 1.34828 * 117.00187 * 354.66396 * 14 13 12 16 16 H 1.08005 * 120.00113 * 5.07388 * 15 14 13 17 17 C 1.38658 * 120.00325 * 185.07349 * 15 14 13 18 18 N 1.31559 * 119.99957 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99649 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47154 * 89.99927 * 19 17 15 21 21 H 1.48508 * 109.46936 * 209.99827 * 19 17 15 22 22 H 1.48500 * 109.47349 * 329.99390 * 19 17 15 23 23 C 1.38077 * 119.96057 * 90.00229 * 9 8 6 24 24 C 1.46932 * 118.73695 * 53.86367 * 5 4 2 25 25 C 1.53628 * 108.53995 * 306.09188 * 24 5 4 26 26 C 1.53038 * 109.49608 * 239.92235 * 2 1 3 27 27 H 1.09004 * 109.46333 * 181.40555 * 26 2 1 28 28 O 1.42905 * 109.46413 * 61.43390 * 26 2 1 29 29 H 1.08995 * 109.46910 * 299.91725 * 1 2 3 30 30 H 1.08992 * 109.47168 * 59.91641 * 1 2 3 31 31 H 1.09001 * 109.46755 * 179.91892 * 1 2 3 32 32 H 1.08994 * 109.47122 * 180.08494 * 3 2 1 33 33 H 1.09002 * 109.46877 * 300.08446 * 3 2 1 34 34 H 1.08999 * 109.47184 * 60.08175 * 3 2 1 35 35 H 1.09005 * 109.58462 * 305.52500 * 4 2 1 36 36 H 1.09006 * 109.70729 * 185.17537 * 4 2 1 37 37 H 1.08998 * 109.46973 * 60.00648 * 8 6 5 38 38 H 1.08996 * 109.47400 * 300.00529 * 8 6 5 39 39 H 1.07998 * 119.93357 * 0.02562 * 10 9 8 40 40 H 1.08005 * 119.96139 * 180.02562 * 11 10 9 41 41 H 1.08004 * 120.03421 * 180.02562 * 12 11 10 42 42 H 0.97001 * 119.99831 * 180.02562 * 18 17 15 43 43 H 1.08000 * 120.04009 * 359.95629 * 23 9 8 44 44 H 1.08995 * 109.58821 * 65.92350 * 24 5 4 45 45 H 1.08994 * 109.58366 * 186.35193 * 24 5 4 46 46 H 1.08993 * 109.63340 * 294.86863 * 25 24 5 47 47 H 1.08998 * 109.42668 * 174.72569 * 25 24 5 48 48 H 0.96698 * 114.00255 * 179.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0414 -0.7238 1.2495 5 7 1.6516 -2.1382 1.1695 6 6 0.9749 -2.7222 2.1782 7 8 0.6817 -2.0793 3.1638 8 6 0.5818 -4.1737 2.0809 9 6 -0.1595 -4.5782 3.3291 10 6 0.5366 -5.0789 4.4144 11 6 -0.1399 -5.4506 5.5616 12 6 -1.5137 -5.3233 5.6269 13 6 -2.2150 -4.8173 4.5405 14 8 -3.5646 -4.6860 4.6035 15 6 -4.1757 -5.1670 5.7048 16 1 -3.5871 -5.5567 6.5223 17 6 -5.5597 -5.1614 5.7881 18 7 -6.1559 -5.6303 6.8631 19 14 -6.5777 -4.4881 4.3740 20 1 -6.8874 -5.5842 3.4212 21 1 -7.8436 -3.9191 4.9024 22 1 -5.8116 -3.4256 3.6744 23 6 -1.5329 -4.4488 3.3879 24 6 2.0190 -2.9055 -0.0285 25 6 1.5030 -2.1557 -1.2661 26 6 2.0408 -0.7230 -1.2484 27 1 3.1305 -0.7446 -1.2353 28 8 1.5924 -0.0317 -2.4159 29 1 -0.3633 0.5125 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0015 32 1 3.1313 1.4411 -0.0015 33 1 1.6772 1.9566 -0.8893 34 1 1.6797 1.9558 0.8907 35 1 1.6008 -0.2731 2.1388 36 1 3.1275 -0.6464 1.3005 37 1 1.4771 -4.7863 1.9751 38 1 -0.0620 -4.3184 1.2134 39 1 1.6109 -5.1791 4.3660 40 1 0.4065 -5.8409 6.4076 41 1 -2.0415 -5.6134 6.5234 42 1 -7.1242 -5.6268 6.9212 43 1 -2.0759 -4.0574 2.5403 44 1 3.1033 -3.0022 -0.0822 45 1 1.5637 -3.8947 0.0174 46 1 0.4133 -2.1354 -1.2541 47 1 1.8481 -2.6628 -2.1672 48 1 1.8799 -0.4349 -3.2465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275910014.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:35 Heat of formation + Delta-G solvation = -113.841525 kcal Electronic energy + Delta-G solvation = -29059.826107 eV Core-core repulsion = 25079.287656 eV Total energy + Delta-G solvation = -3980.538451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.68393 -40.85734 -39.63466 -38.26100 -36.67189 -35.20166 -34.48980 -33.43669 -32.11074 -31.10744 -29.20055 -28.29167 -27.40509 -27.00060 -25.66014 -23.43198 -23.35179 -22.55845 -20.60615 -19.65031 -19.49264 -18.80537 -18.38199 -17.91921 -16.96412 -16.88190 -16.78134 -16.29584 -15.96759 -15.77933 -15.65616 -15.26744 -15.12073 -14.77596 -14.67743 -14.39130 -14.33735 -14.16846 -14.05861 -13.93257 -13.18909 -13.06675 -13.03348 -12.92458 -12.86078 -12.64846 -12.55212 -12.44493 -12.43747 -12.33073 -11.99484 -11.94570 -11.86461 -11.32577 -11.17007 -10.94755 -10.87177 -10.64989 -9.67506 -9.63756 -9.07304 -8.51784 -6.24404 0.47432 0.69286 1.27769 1.32341 1.49185 1.65736 2.01700 2.26254 2.75687 3.04014 3.10743 3.30221 3.54111 3.67575 3.77557 3.92214 3.94237 4.06180 4.08016 4.25787 4.27780 4.31673 4.39332 4.43012 4.54050 4.58384 4.65884 4.68406 4.68886 4.75814 4.76395 4.82602 4.90851 4.92499 4.96876 5.02773 5.17709 5.19582 5.23905 5.35603 5.38218 5.43420 5.58377 5.63908 5.71559 5.75686 5.90405 6.23180 6.40844 6.82651 6.99354 7.22817 7.57855 8.60188 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.002802 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.515590 B = 9989.370284 C =10994.851781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.069 4.069 3 C -0.133 4.133 4 C 0.121 3.879 5 N -0.610 5.610 6 C 0.514 3.486 7 O -0.579 6.579 8 C -0.089 4.089 9 C -0.028 4.028 10 C -0.170 4.170 11 C -0.077 4.077 12 C -0.241 4.241 13 C 0.119 3.881 14 O -0.248 6.248 15 C -0.400 4.400 16 H 0.080 0.920 17 C 0.010 3.990 18 N -0.924 5.924 19 Si 0.970 3.030 20 H -0.261 1.261 21 H -0.265 1.265 22 H -0.269 1.269 23 C -0.182 4.182 24 C 0.101 3.899 25 C -0.168 4.168 26 C 0.121 3.879 27 H 0.075 0.925 28 O -0.578 6.578 29 H 0.032 0.968 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.145 0.855 38 H 0.123 0.877 39 H 0.149 0.851 40 H 0.141 0.859 41 H 0.107 0.893 42 H 0.285 0.715 43 H 0.118 0.882 44 H 0.100 0.900 45 H 0.109 0.891 46 H 0.061 0.939 47 H 0.109 0.891 48 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.888 6.725 -22.806 33.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.070 4.070 3 C -0.191 4.191 4 C -0.002 4.002 5 N -0.343 5.343 6 C 0.303 3.697 7 O -0.458 6.458 8 C -0.128 4.128 9 C -0.028 4.028 10 C -0.188 4.188 11 C -0.095 4.095 12 C -0.260 4.260 13 C 0.070 3.930 14 O -0.156 6.156 15 C -0.476 4.476 16 H 0.098 0.902 17 C -0.188 4.188 18 N -0.565 5.565 19 Si 0.792 3.208 20 H -0.185 1.185 21 H -0.190 1.190 22 H -0.194 1.194 23 C -0.201 4.201 24 C -0.020 4.020 25 C -0.207 4.207 26 C 0.062 3.938 27 H 0.093 0.907 28 O -0.387 6.387 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.162 0.838 38 H 0.141 0.859 39 H 0.167 0.833 40 H 0.159 0.841 41 H 0.125 0.875 42 H 0.095 0.905 43 H 0.136 0.864 44 H 0.118 0.882 45 H 0.127 0.873 46 H 0.080 0.920 47 H 0.127 0.873 48 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 23.120 7.498 -21.892 32.711 hybrid contribution -0.995 -0.114 0.187 1.019 sum 22.125 7.384 -21.705 31.861 Atomic orbital electron populations 1.21745 0.95316 1.01122 1.00723 1.20885 0.95658 0.96514 0.93971 1.21701 1.01531 0.93991 1.01828 1.21662 1.00308 0.80580 0.97629 1.48187 1.55962 1.11309 1.18881 1.20962 0.76669 0.89931 0.82112 1.90747 1.55516 1.66360 1.33197 1.20743 1.03089 0.92434 0.96548 1.19228 0.91242 0.96234 0.96123 1.21004 1.00379 1.04362 0.93052 1.21120 0.92265 0.97329 0.98810 1.21324 0.96281 1.09048 0.99360 1.19588 0.83139 0.95200 0.95026 1.83507 1.17083 1.73108 1.41887 1.20722 0.91484 1.41047 0.94354 0.90219 1.25265 0.96642 0.96577 1.00295 1.69729 1.11327 1.46322 1.29091 0.85237 0.77602 0.79419 0.78553 1.18516 1.18997 1.19382 1.20251 0.94731 1.08667 0.96495 1.22164 1.02243 0.95698 0.81934 1.22800 1.02038 0.96306 0.99528 1.21692 0.97485 0.90002 0.84620 0.90699 1.86503 1.79321 1.56133 1.16719 0.94855 0.92190 0.93414 0.91074 0.91981 0.93320 0.91562 0.89228 0.83769 0.85942 0.83312 0.84102 0.87489 0.90537 0.86408 0.88238 0.87330 0.92022 0.87272 0.75636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 7.85 71.98 0.57 -2.27 16 2 C -0.07 -1.10 0.60 -52.11 -0.03 -1.13 16 3 C -0.13 -1.97 8.32 71.98 0.60 -1.37 16 4 C 0.12 2.17 5.11 86.36 0.44 2.61 16 5 N -0.61 -10.55 2.41 -818.07 -1.97 -12.51 16 6 C 0.51 13.09 7.69 87.66 0.67 13.77 16 7 O -0.58 -21.67 15.45 -3.01 -0.05 -21.72 16 8 C -0.09 -1.86 4.17 29.10 0.12 -1.73 16 9 C -0.03 -0.90 4.37 -19.88 -0.09 -0.99 16 10 C -0.17 -5.39 9.70 22.30 0.22 -5.18 16 11 C -0.08 -2.86 10.04 22.25 0.22 -2.64 16 12 C -0.24 -11.40 9.17 22.39 0.21 -11.19 16 13 C 0.12 6.02 6.65 22.58 0.15 6.17 16 14 O -0.25 -14.37 8.59 -22.68 -0.19 -14.57 16 15 C -0.40 -24.76 9.95 67.92 0.68 -24.08 16 16 H 0.08 5.16 5.44 -2.91 -0.02 5.14 16 17 C 0.01 0.62 5.49 84.83 0.47 1.09 16 18 N -0.92 -56.96 13.96 21.61 0.30 -56.66 16 19 Si 0.97 47.40 28.62 68.60 1.96 49.36 16 20 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 22 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 23 C -0.18 -7.61 9.65 22.39 0.22 -7.39 16 24 C 0.10 0.79 6.37 86.51 0.55 1.34 16 25 C -0.17 -1.30 5.38 30.82 0.17 -1.14 16 26 C 0.12 1.21 2.56 30.62 0.08 1.29 16 27 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 28 O -0.58 -6.40 11.99 -148.98 -1.79 -8.19 16 29 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 1.28 7.73 -2.39 -0.02 1.27 16 31 H 0.05 1.09 5.97 -2.39 -0.01 1.08 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 1.00 7.65 -2.39 -0.02 0.98 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 1.66 7.01 -2.38 -0.02 1.64 16 36 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.14 1.74 7.87 -2.39 -0.02 1.73 16 38 H 0.12 2.03 7.65 -2.39 -0.02 2.01 16 39 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 40 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 41 H 0.11 5.51 5.64 -2.91 -0.02 5.49 16 42 H 0.28 16.06 8.31 -92.71 -0.77 15.29 16 43 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 44 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.11 0.53 5.93 -2.39 -0.01 0.52 16 46 H 0.06 0.78 6.33 -2.39 -0.02 0.77 16 47 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 48 H 0.39 0.92 9.08 -74.06 -0.67 0.25 16 Total: -1.00 -83.28 381.16 3.81 -79.47 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.30 Total: 17.65 kcal Atomic # 6 Polarization: -38.07 SS G_CDS: 5.23 Total: -32.84 kcal Atomic # 7 Polarization: -67.51 SS G_CDS: -1.67 Total: -69.17 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -2.03 Total: -44.47 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 1.96 Total: 49.36 kcal Total: -83.28 3.81 -79.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275910014.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.368 kcal (2) G-P(sol) polarization free energy of solvation -83.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds