Wall clock time and date at job start Tue Mar 31 2020 19:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47408 * 2 1 4 4 C 1.53001 * 109.46865 * 240.00022 * 2 1 3 5 5 C 1.53004 * 109.47204 * 120.00328 * 2 1 3 6 6 H 1.09000 * 109.46313 * 305.85130 * 5 2 1 7 7 C 1.52995 * 109.47302 * 185.84916 * 5 2 1 8 8 O 1.42904 * 109.47314 * 302.86642 * 7 5 2 9 9 N 1.46498 * 109.47040 * 65.84772 * 5 2 1 10 10 C 1.34776 * 119.99828 * 205.00213 * 9 5 2 11 11 O 1.21717 * 120.00414 * 359.97438 * 10 9 5 12 12 C 1.46260 * 119.99920 * 180.02562 * 10 9 5 13 13 C 1.35014 * 119.99861 * 179.97438 * 12 10 9 14 14 C 1.46967 * 120.00020 * 180.02562 * 13 12 10 15 15 C 1.40019 * 120.10294 * 180.02562 * 14 13 12 16 16 C 1.37594 * 119.89874 * 179.97438 * 15 14 13 17 17 C 1.39173 * 120.10263 * 0.25847 * 16 15 14 18 18 O 1.35576 * 119.90100 * 179.74463 * 17 16 15 19 19 C 1.34785 * 116.99935 * 354.43949 * 18 17 16 20 20 H 1.08003 * 119.99867 * 5.07395 * 19 18 17 21 21 C 1.38718 * 119.99993 * 185.07089 * 19 18 17 22 22 N 1.31506 * 119.99802 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 119.99910 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47642 * 89.99668 * 23 21 19 25 25 H 1.48503 * 109.47126 * 209.99906 * 23 21 19 26 26 H 1.48503 * 109.47082 * 329.99152 * 23 21 19 27 27 C 1.39178 * 120.20122 * 359.48235 * 17 16 15 28 28 C 1.37595 * 120.10130 * 0.51839 * 27 17 16 29 29 H 1.08999 * 109.46808 * 300.00002 * 1 2 3 30 30 H 1.09009 * 109.47092 * 59.99307 * 1 2 3 31 31 H 1.08993 * 109.47355 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46806 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47132 * 299.99996 * 3 2 1 34 34 H 1.08999 * 109.47138 * 60.00200 * 3 2 1 35 35 H 1.09003 * 109.47384 * 289.68953 * 4 2 1 36 36 H 1.08999 * 109.47445 * 49.68810 * 4 2 1 37 37 H 1.09001 * 109.47058 * 169.69152 * 4 2 1 38 38 H 1.09007 * 109.47162 * 62.86118 * 7 5 2 39 39 H 1.08992 * 109.47165 * 182.86278 * 7 5 2 40 40 H 0.96702 * 114.00076 * 179.97438 * 8 7 5 41 41 H 0.97004 * 120.00135 * 25.00156 * 9 5 2 42 42 H 1.08003 * 119.99975 * 0.02562 * 12 10 9 43 43 H 1.08001 * 120.00162 * 359.97438 * 13 12 10 44 44 H 1.08000 * 120.05256 * 359.95356 * 15 14 13 45 45 H 1.08000 * 119.95033 * 179.97438 * 16 15 14 46 46 H 0.97002 * 119.99760 * 180.02562 * 22 21 19 47 47 H 1.07999 * 119.95286 * 180.25696 * 27 17 16 48 48 H 1.07995 * 120.05474 * 179.76393 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.5936 -0.2715 2.1361 7 6 3.5629 -0.5953 1.3249 8 8 4.1446 -1.1248 0.1319 9 7 1.6700 -2.1372 1.1808 10 6 1.5439 -2.8562 2.3138 11 8 1.7378 -2.3293 3.3938 12 6 1.1750 -4.2698 2.2455 13 6 1.0491 -4.9902 3.3805 14 6 0.6790 -6.4109 3.3119 15 6 0.5474 -7.1598 4.4876 16 6 0.2002 -8.4894 4.4185 17 6 -0.0148 -9.0914 3.1822 18 8 -0.3517 -10.4031 3.1187 19 6 -0.3489 -11.0924 4.2769 20 1 -0.1664 -10.5798 5.2099 21 6 -0.5805 -12.4601 4.2707 22 7 -0.5772 -13.1327 5.4007 23 14 -0.8956 -13.3466 2.6569 24 1 0.3943 -13.8135 2.0884 25 1 -1.7816 -14.5138 2.8981 26 1 -1.5504 -12.4174 1.7013 27 6 0.1096 -8.3496 2.0112 28 6 0.4564 -7.0194 2.0705 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5140 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.8346 -1.7882 -1.1621 36 1 1.5342 -0.3247 -2.1297 37 1 3.1143 -0.5648 -1.3460 38 1 3.8359 0.4551 1.4270 39 1 3.9311 -1.1518 2.1867 40 1 5.1102 -1.0773 0.1105 41 1 1.5157 -2.5572 0.3202 42 1 1.0040 -4.7376 1.2872 43 1 1.2213 -4.5227 4.3387 44 1 0.7185 -6.6947 5.4471 45 1 0.0988 -9.0680 5.3247 46 1 -0.7388 -14.0891 5.3963 47 1 -0.0623 -8.8197 1.0542 48 1 0.5565 -6.4454 1.1612 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278687707.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:27 Heat of formation + Delta-G solvation = -78.749034 kcal Electronic energy + Delta-G solvation = -27654.160915 eV Core-core repulsion = 23675.144188 eV Total energy + Delta-G solvation = -3979.016727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.33014 -39.34895 -38.32519 -37.00740 -36.04638 -33.58249 -33.21614 -32.45036 -30.52325 -29.48651 -28.34782 -27.49319 -27.25345 -25.62007 -23.91284 -22.58286 -22.23254 -20.67914 -19.65521 -18.88977 -18.03767 -17.74719 -17.43231 -17.04235 -16.52181 -15.40989 -15.11565 -15.02025 -14.87242 -14.31921 -14.17215 -14.03761 -13.96749 -13.86235 -13.62649 -13.46763 -12.92519 -12.83523 -12.77854 -12.60647 -12.41968 -12.39020 -12.08178 -11.88696 -11.85307 -11.78187 -11.21208 -11.07536 -11.01746 -10.91956 -10.81523 -10.75253 -10.27054 -10.10485 -9.75409 -9.63831 -9.54047 -9.08987 -8.89838 -8.45965 -7.22858 -6.59620 -4.23400 1.01208 2.04400 2.49379 3.12318 3.16218 3.20370 3.29532 3.53839 3.98990 4.09476 4.27138 4.43975 4.51608 4.63888 4.64268 4.93294 4.94816 4.98632 5.04229 5.11065 5.18945 5.31332 5.34534 5.43699 5.45374 5.46461 5.51387 5.58956 5.61749 5.67442 5.68802 5.86387 5.90540 5.95176 6.03805 6.04079 6.27471 6.31023 6.41016 6.50301 6.55572 6.68768 6.94209 7.09948 7.17760 7.30780 7.42779 7.58154 7.63658 7.84996 8.34415 8.73779 9.34162 10.46670 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026884 B = 0.001846 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.270019 B =15165.722066 C =15537.501237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 C -0.141 4.141 4 C -0.143 4.143 5 C 0.159 3.841 6 H 0.097 0.903 7 C 0.061 3.939 8 O -0.557 6.557 9 N -0.719 5.719 10 C 0.555 3.445 11 O -0.562 6.562 12 C -0.276 4.276 13 C 0.034 3.966 14 C -0.188 4.188 15 C -0.037 4.037 16 C -0.230 4.230 17 C 0.173 3.827 18 O -0.203 6.203 19 C -0.392 4.392 20 H 0.111 0.889 21 C 0.066 3.934 22 N -0.867 5.867 23 Si 0.907 3.093 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.258 1.258 27 C -0.199 4.199 28 C -0.045 4.045 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.370 0.630 41 H 0.401 0.599 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.117 0.883 45 H 0.137 0.863 46 H 0.283 0.717 47 H 0.121 0.879 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.025 24.907 -11.871 28.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 C -0.198 4.198 4 C -0.200 4.200 5 C 0.054 3.946 6 H 0.115 0.885 7 C -0.018 4.018 8 O -0.363 6.363 9 N -0.371 5.371 10 C 0.347 3.653 11 O -0.444 6.444 12 C -0.297 4.297 13 C 0.014 3.986 14 C -0.189 4.189 15 C -0.056 4.056 16 C -0.249 4.249 17 C 0.119 3.881 18 O -0.106 6.106 19 C -0.467 4.467 20 H 0.128 0.872 21 C -0.140 4.140 22 N -0.503 5.503 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.182 1.182 27 C -0.219 4.219 28 C -0.064 4.064 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.217 0.783 41 H 0.238 0.762 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.135 0.865 45 H 0.155 0.845 46 H 0.093 0.907 47 H 0.139 0.861 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.416 24.760 -11.323 27.760 hybrid contribution 0.355 -0.656 -0.616 0.967 sum 5.771 24.104 -11.939 27.511 Atomic orbital electron populations 1.21909 0.94280 1.02200 1.01727 1.20738 0.95680 0.95702 0.95079 1.21907 1.01310 0.94713 1.01896 1.22065 1.03402 0.99268 0.95223 1.21005 0.92410 0.82273 0.98925 0.88529 1.22679 0.94155 0.97463 0.87509 1.86628 1.24491 1.85704 1.39468 1.45941 1.71437 1.10439 1.09276 1.18428 0.76087 0.87275 0.83525 1.90764 1.52252 1.72775 1.28560 1.22474 1.14208 0.93279 0.99712 1.22288 0.86553 0.91669 0.98115 1.18533 1.13678 0.93065 0.93664 1.21039 0.94459 0.93242 0.96842 1.21218 1.09652 0.95642 0.98368 1.19363 0.90996 0.84324 0.93443 1.83507 1.73903 1.17582 1.35577 1.20875 1.50273 0.91271 0.84241 0.87208 1.24539 0.95440 0.95273 0.98706 1.69617 1.45398 1.09370 1.25913 0.86155 0.79064 0.79095 0.82497 1.19646 1.20532 1.18210 1.20144 1.10971 0.94241 0.96497 1.20886 0.95628 0.93416 0.96440 0.92699 0.92476 0.92359 0.92084 0.92302 0.92672 0.93181 0.93582 0.89280 0.92812 0.93134 0.78313 0.76171 0.85967 0.85813 0.86545 0.84511 0.90675 0.86131 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.35 37.16 0.31 -0.76 16 2 C -0.07 -0.52 0.62 -154.51 -0.10 -0.62 16 3 C -0.14 -0.85 7.94 37.16 0.29 -0.56 16 4 C -0.14 -1.04 7.47 37.16 0.28 -0.76 16 5 C 0.16 1.47 1.78 -67.93 -0.12 1.35 16 6 H 0.10 1.03 7.58 -51.93 -0.39 0.64 16 7 C 0.06 0.50 6.22 37.15 0.23 0.73 16 8 O -0.56 -4.04 9.82 -35.23 -0.35 -4.38 16 9 N -0.72 -7.53 4.39 -55.25 -0.24 -7.77 16 10 C 0.55 7.61 7.70 -13.04 -0.10 7.51 16 11 O -0.56 -9.47 15.89 5.17 0.08 -9.39 16 12 C -0.28 -3.69 9.41 -37.51 -0.35 -4.05 16 13 C 0.03 0.50 9.45 -37.19 -0.35 0.15 16 14 C -0.19 -3.12 5.87 -105.02 -0.62 -3.73 16 15 C -0.04 -0.66 9.78 -39.15 -0.38 -1.04 16 16 C -0.23 -4.73 9.14 -39.47 -0.36 -5.09 16 17 C 0.17 3.80 6.66 -38.89 -0.26 3.55 16 18 O -0.20 -5.09 8.57 0.71 0.01 -5.09 16 19 C -0.39 -10.54 9.94 30.91 0.31 -10.23 16 20 H 0.11 3.01 5.41 -52.48 -0.28 2.72 16 21 C 0.07 1.76 5.49 -17.51 -0.10 1.67 16 22 N -0.87 -24.01 13.96 55.48 0.77 -23.23 16 23 Si 0.91 20.68 28.62 -169.99 -4.86 15.82 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 27 C -0.20 -3.73 9.97 -39.47 -0.39 -4.12 16 28 C -0.05 -0.74 9.40 -39.15 -0.37 -1.11 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.06 0.47 7.78 -51.93 -0.40 0.07 16 32 H 0.06 0.35 6.40 -51.93 -0.33 0.02 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.05 0.38 5.90 -51.93 -0.31 0.08 16 36 H 0.05 0.31 8.11 -51.93 -0.42 -0.11 16 37 H 0.09 0.68 5.53 -51.93 -0.29 0.39 16 38 H 0.05 0.35 6.51 -51.92 -0.34 0.01 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.37 1.39 9.12 45.56 0.42 1.80 16 41 H 0.40 3.64 6.37 -40.82 -0.26 3.38 16 42 H 0.12 1.41 6.07 -52.48 -0.32 1.09 16 43 H 0.12 1.84 7.52 -52.49 -0.39 1.45 16 44 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 45 H 0.14 2.93 5.62 -52.49 -0.29 2.64 16 46 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.12 2.07 8.06 -52.49 -0.42 1.64 16 48 H 0.12 1.56 6.16 -52.49 -0.32 1.24 16 LS Contribution 386.97 15.07 5.83 5.83 Total: -1.00 -30.26 386.97 -6.87 -37.13 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.04 Total: 8.19 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -2.08 Total: -17.12 kcal Atomic # 7 Polarization: -31.53 SS G_CDS: 0.53 Total: -31.00 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.26 Total: -18.86 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.86 Total: 15.82 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.26 -6.87 -37.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278687707.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.617 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds