Wall clock time and date at job start Tue Mar 31 2020 19:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47408 * 2 1 4 4 C 1.53001 * 109.46865 * 240.00022 * 2 1 3 5 5 C 1.53004 * 109.47204 * 120.00328 * 2 1 3 6 6 H 1.09000 * 109.46313 * 305.85130 * 5 2 1 7 7 C 1.52995 * 109.47302 * 185.84916 * 5 2 1 8 8 O 1.42904 * 109.47314 * 302.86642 * 7 5 2 9 9 N 1.46498 * 109.47040 * 65.84772 * 5 2 1 10 10 C 1.34776 * 119.99828 * 205.00213 * 9 5 2 11 11 O 1.21717 * 120.00414 * 359.97438 * 10 9 5 12 12 C 1.46260 * 119.99920 * 180.02562 * 10 9 5 13 13 C 1.35014 * 119.99861 * 179.97438 * 12 10 9 14 14 C 1.46967 * 120.00020 * 180.02562 * 13 12 10 15 15 C 1.40019 * 120.10294 * 180.02562 * 14 13 12 16 16 C 1.37594 * 119.89874 * 179.97438 * 15 14 13 17 17 C 1.39173 * 120.10263 * 0.25847 * 16 15 14 18 18 O 1.35576 * 119.90100 * 179.74463 * 17 16 15 19 19 C 1.34785 * 116.99935 * 354.43949 * 18 17 16 20 20 H 1.08003 * 119.99867 * 5.07395 * 19 18 17 21 21 C 1.38718 * 119.99993 * 185.07089 * 19 18 17 22 22 N 1.31506 * 119.99802 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 119.99910 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47642 * 89.99668 * 23 21 19 25 25 H 1.48503 * 109.47126 * 209.99906 * 23 21 19 26 26 H 1.48503 * 109.47082 * 329.99152 * 23 21 19 27 27 C 1.39178 * 120.20122 * 359.48235 * 17 16 15 28 28 C 1.37595 * 120.10130 * 0.51839 * 27 17 16 29 29 H 1.08999 * 109.46808 * 300.00002 * 1 2 3 30 30 H 1.09009 * 109.47092 * 59.99307 * 1 2 3 31 31 H 1.08993 * 109.47355 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46806 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47132 * 299.99996 * 3 2 1 34 34 H 1.08999 * 109.47138 * 60.00200 * 3 2 1 35 35 H 1.09003 * 109.47384 * 289.68953 * 4 2 1 36 36 H 1.08999 * 109.47445 * 49.68810 * 4 2 1 37 37 H 1.09001 * 109.47058 * 169.69152 * 4 2 1 38 38 H 1.09007 * 109.47162 * 62.86118 * 7 5 2 39 39 H 1.08992 * 109.47165 * 182.86278 * 7 5 2 40 40 H 0.96702 * 114.00076 * 179.97438 * 8 7 5 41 41 H 0.97004 * 120.00135 * 25.00156 * 9 5 2 42 42 H 1.08003 * 119.99975 * 0.02562 * 12 10 9 43 43 H 1.08001 * 120.00162 * 359.97438 * 13 12 10 44 44 H 1.08000 * 120.05256 * 359.95356 * 15 14 13 45 45 H 1.08000 * 119.95033 * 179.97438 * 16 15 14 46 46 H 0.97002 * 119.99760 * 180.02562 * 22 21 19 47 47 H 1.07999 * 119.95286 * 180.25696 * 27 17 16 48 48 H 1.07995 * 120.05474 * 179.76393 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.5936 -0.2715 2.1361 7 6 3.5629 -0.5953 1.3249 8 8 4.1446 -1.1248 0.1319 9 7 1.6700 -2.1372 1.1808 10 6 1.5439 -2.8562 2.3138 11 8 1.7378 -2.3293 3.3938 12 6 1.1750 -4.2698 2.2455 13 6 1.0491 -4.9902 3.3805 14 6 0.6790 -6.4109 3.3119 15 6 0.5474 -7.1598 4.4876 16 6 0.2002 -8.4894 4.4185 17 6 -0.0148 -9.0914 3.1822 18 8 -0.3517 -10.4031 3.1187 19 6 -0.3489 -11.0924 4.2769 20 1 -0.1664 -10.5798 5.2099 21 6 -0.5805 -12.4601 4.2707 22 7 -0.5772 -13.1327 5.4007 23 14 -0.8956 -13.3466 2.6569 24 1 0.3943 -13.8135 2.0884 25 1 -1.7816 -14.5138 2.8981 26 1 -1.5504 -12.4174 1.7013 27 6 0.1096 -8.3496 2.0112 28 6 0.4564 -7.0194 2.0705 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5140 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.8346 -1.7882 -1.1621 36 1 1.5342 -0.3247 -2.1297 37 1 3.1143 -0.5648 -1.3460 38 1 3.8359 0.4551 1.4270 39 1 3.9311 -1.1518 2.1867 40 1 5.1102 -1.0773 0.1105 41 1 1.5157 -2.5572 0.3202 42 1 1.0040 -4.7376 1.2872 43 1 1.2213 -4.5227 4.3387 44 1 0.7185 -6.6947 5.4471 45 1 0.0988 -9.0680 5.3247 46 1 -0.7388 -14.0891 5.3963 47 1 -0.0623 -8.8197 1.0542 48 1 0.5565 -6.4454 1.1612 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278687707.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:26 Heat of formation + Delta-G solvation = -98.420826 kcal Electronic energy + Delta-G solvation = -27655.013947 eV Core-core repulsion = 23675.144188 eV Total energy + Delta-G solvation = -3979.869759 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.25315 -40.92182 -39.27901 -38.52631 -36.63029 -34.76446 -34.51307 -34.15853 -32.01580 -30.44248 -29.47148 -28.06244 -27.96770 -27.34491 -24.97466 -23.86150 -23.50645 -21.91638 -20.79025 -20.00638 -19.42219 -19.11747 -18.47266 -18.07420 -17.36728 -16.69060 -16.45202 -16.15155 -15.84666 -15.73956 -15.63565 -15.41145 -15.11878 -14.89332 -14.54424 -14.39014 -14.24414 -14.12036 -14.06018 -13.55323 -13.44579 -13.35801 -13.18897 -12.93203 -12.73535 -12.70118 -12.61421 -12.41390 -12.35862 -11.94122 -11.68923 -11.52029 -11.43100 -11.31301 -11.16082 -10.98872 -10.68126 -10.61087 -9.98668 -9.92673 -8.74622 -8.53937 -6.25720 -0.28276 0.54225 1.10681 1.32326 1.37225 1.52167 2.26016 2.27886 2.36430 2.79976 2.99660 3.14727 3.40373 3.63021 3.80443 3.90179 3.91681 4.03972 4.07760 4.27573 4.32255 4.36523 4.41767 4.45226 4.50964 4.61899 4.70902 4.77017 4.82974 4.84698 4.87932 4.98274 5.10815 5.12683 5.15272 5.21220 5.26690 5.27937 5.35468 5.38999 5.48002 5.55039 5.60922 5.69900 5.77001 5.79553 5.82889 6.13777 6.62766 6.79155 6.90481 7.30100 7.50270 8.56849 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026884 B = 0.001846 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.270019 B =15165.722066 C =15537.501237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.065 4.065 3 C -0.140 4.140 4 C -0.140 4.140 5 C 0.153 3.847 6 H 0.080 0.920 7 C 0.068 3.932 8 O -0.563 6.563 9 N -0.702 5.702 10 C 0.548 3.452 11 O -0.595 6.595 12 C -0.240 4.240 13 C 0.011 3.989 14 C -0.160 4.160 15 C -0.046 4.046 16 C -0.243 4.243 17 C 0.136 3.864 18 O -0.233 6.233 19 C -0.404 4.404 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.917 5.917 23 Si 0.972 3.028 24 H -0.265 1.265 25 H -0.268 1.268 26 H -0.260 1.260 27 C -0.194 4.194 28 C -0.040 4.040 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.053 0.947 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.026 0.974 40 H 0.387 0.613 41 H 0.411 0.589 42 H 0.152 0.848 43 H 0.122 0.878 44 H 0.139 0.861 45 H 0.114 0.886 46 H 0.286 0.714 47 H 0.139 0.861 48 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.787 28.200 -15.432 32.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.065 4.065 3 C -0.197 4.197 4 C -0.197 4.197 5 C 0.048 3.952 6 H 0.098 0.902 7 C -0.011 4.011 8 O -0.371 6.371 9 N -0.353 5.353 10 C 0.339 3.661 11 O -0.479 6.479 12 C -0.260 4.260 13 C -0.009 4.009 14 C -0.161 4.161 15 C -0.064 4.064 16 C -0.262 4.262 17 C 0.086 3.914 18 O -0.139 6.139 19 C -0.480 4.480 20 H 0.101 0.899 21 C -0.188 4.188 22 N -0.556 5.556 23 Si 0.793 3.207 24 H -0.190 1.190 25 H -0.193 1.193 26 H -0.184 1.184 27 C -0.212 4.212 28 C -0.058 4.058 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.045 0.955 40 H 0.237 0.763 41 H 0.250 0.750 42 H 0.169 0.831 43 H 0.140 0.860 44 H 0.156 0.844 45 H 0.132 0.868 46 H 0.096 0.904 47 H 0.157 0.843 48 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.206 28.126 -14.929 32.442 hybrid contribution 0.283 -1.019 0.374 1.122 sum 6.489 27.107 -14.556 31.445 Atomic orbital electron populations 1.21919 0.94358 1.01835 1.02044 1.20703 0.95531 0.96258 0.94056 1.21904 1.01644 0.93787 1.02380 1.22037 1.03413 0.98948 0.95267 1.21151 0.93305 0.81367 0.99371 0.90187 1.22510 0.93282 0.98295 0.87019 1.86577 1.26177 1.85678 1.38621 1.45886 1.69675 1.10950 1.08828 1.18555 0.76152 0.87586 0.83773 1.90768 1.53706 1.73415 1.30008 1.22800 1.09918 0.92923 1.00369 1.22155 0.89096 0.90743 0.98946 1.18820 1.10141 0.93705 0.93388 1.21283 0.94227 0.92104 0.98772 1.21222 1.10602 0.96901 0.97489 1.19931 0.92492 0.83855 0.95148 1.83463 1.77368 1.18931 1.34164 1.20757 1.50997 0.91845 0.84379 0.89852 1.25336 0.95536 0.95894 1.01998 1.69704 1.48347 1.09807 1.27769 0.85201 0.79189 0.77952 0.78311 1.18959 1.19262 1.18385 1.20486 1.09727 0.94993 0.96040 1.21339 0.93958 0.92598 0.97911 0.93249 0.91369 0.93032 0.91569 0.91453 0.92626 0.93556 0.92847 0.89381 0.90866 0.95542 0.76349 0.74977 0.83065 0.85990 0.84359 0.86834 0.90381 0.84326 0.81821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.35 71.98 0.60 -1.16 16 2 C -0.06 -0.76 0.62 -52.18 -0.03 -0.79 16 3 C -0.14 -1.28 7.94 71.98 0.57 -0.71 16 4 C -0.14 -1.54 7.47 71.98 0.54 -1.00 16 5 C 0.15 2.45 1.78 44.99 0.08 2.53 16 6 H 0.08 1.59 7.58 -2.39 -0.02 1.57 16 7 C 0.07 0.95 6.22 71.98 0.45 1.40 16 8 O -0.56 -6.35 9.82 -148.98 -1.46 -7.82 16 9 N -0.70 -12.50 4.39 -446.92 -1.96 -14.46 16 10 C 0.55 13.39 7.70 86.33 0.66 14.06 16 11 O -0.60 -19.01 15.89 -4.40 -0.07 -19.08 16 12 C -0.24 -5.38 9.41 23.61 0.22 -5.16 16 13 C 0.01 0.28 9.45 23.82 0.23 0.50 16 14 C -0.16 -4.84 5.87 -20.12 -0.12 -4.95 16 15 C -0.05 -1.58 9.78 22.55 0.22 -1.36 16 16 C -0.24 -10.40 9.14 22.34 0.20 -10.20 16 17 C 0.14 6.11 6.66 22.72 0.15 6.27 16 18 O -0.23 -12.19 8.57 -20.37 -0.17 -12.37 16 19 C -0.40 -23.17 9.94 67.93 0.68 -22.49 16 20 H 0.08 5.02 5.41 -2.91 -0.02 5.01 16 21 C 0.01 0.67 5.49 84.86 0.47 1.14 16 22 N -0.92 -53.63 13.96 21.62 0.30 -53.33 16 23 Si 0.97 43.99 28.62 68.60 1.96 45.95 16 24 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 27 C -0.19 -6.87 9.97 22.34 0.22 -6.64 16 28 C -0.04 -1.16 9.40 22.55 0.21 -0.94 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.05 0.69 7.78 -2.39 -0.02 0.67 16 32 H 0.07 0.55 6.40 -2.39 -0.02 0.53 16 33 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.05 0.54 5.90 -2.39 -0.01 0.52 16 36 H 0.05 0.53 8.11 -2.39 -0.02 0.51 16 37 H 0.09 1.03 5.53 -2.39 -0.01 1.01 16 38 H 0.07 0.75 6.51 -2.38 -0.02 0.74 16 39 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.39 1.67 9.12 -74.06 -0.68 0.99 16 41 H 0.41 5.80 6.37 -92.71 -0.59 5.21 16 42 H 0.15 2.51 6.07 -2.91 -0.02 2.50 16 43 H 0.12 3.36 7.52 -2.91 -0.02 3.34 16 44 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 45 H 0.11 5.34 5.62 -2.91 -0.02 5.33 16 46 H 0.29 15.34 8.31 -92.71 -0.77 14.57 16 47 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 48 H 0.16 3.23 6.16 -2.91 -0.02 3.22 16 Total: -1.00 -69.81 386.97 3.69 -66.12 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -0.26 Total: 24.50 kcal Atomic # 6 Polarization: -34.87 SS G_CDS: 5.35 Total: -29.52 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -1.66 Total: -67.79 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -1.71 Total: -39.27 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.96 Total: 45.95 kcal Total: -69.81 3.69 -66.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278687707.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.298 kcal (2) G-P(sol) polarization free energy of solvation -69.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds