Wall clock time and date at job start Tue Mar 31 2020 17:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42895 * 110.21594 * 2 1 4 4 C 1.50123 * 110.37060 * 122.01688 * 2 1 3 5 5 C 1.54714 * 110.90922 * 216.55850 * 4 2 1 6 6 C 1.54893 * 110.21086 * 321.43641 * 5 4 2 7 7 N 1.43441 * 115.92803 * 318.34185 * 6 5 4 8 8 C 1.34772 * 120.53712 * 271.70117 * 7 6 5 9 9 O 1.21288 * 119.99574 * 179.97438 * 8 7 6 10 10 C 1.50693 * 120.00436 * 359.97438 * 8 7 6 11 11 C 1.50702 * 109.47364 * 180.02562 * 10 8 7 12 12 C 1.38326 * 119.96284 * 269.72601 * 11 10 8 13 13 C 1.38285 * 120.13754 * 179.76753 * 12 11 10 14 14 C 1.38124 * 120.06537 * 0.50256 * 13 12 11 15 15 C 1.38859 * 119.93138 * 359.75660 * 14 13 12 16 16 O 1.35753 * 120.06828 * 180.02562 * 15 14 13 17 17 C 1.34823 * 116.99775 * 354.43634 * 16 15 14 18 18 H 1.08003 * 120.00895 * 5.05867 * 17 16 15 19 19 C 1.38662 * 119.99800 * 185.05982 * 17 16 15 20 20 N 1.31552 * 120.00002 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99829 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47496 * 59.99716 * 21 19 17 23 23 H 1.48503 * 109.47029 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47004 * 299.99252 * 21 19 17 25 25 C 1.38071 * 119.96849 * 90.00186 * 11 10 8 26 26 C 1.50168 * 118.92130 * 91.67391 * 7 6 5 27 27 C 1.46238 * 107.53538 * 289.59035 * 26 7 6 28 28 H 1.09001 * 109.47373 * 181.93297 * 1 2 3 29 29 H 1.09001 * 109.46990 * 301.93463 * 1 2 3 30 30 H 1.09005 * 109.47371 * 61.93306 * 1 2 3 31 31 H 0.96702 * 114.00109 * 298.06775 * 3 2 1 32 32 H 1.09001 * 109.21070 * 337.06061 * 4 2 1 33 33 H 1.09004 * 109.20646 * 96.41546 * 4 2 1 34 34 H 1.09004 * 109.47493 * 201.11014 * 5 4 2 35 35 H 1.09005 * 109.16988 * 81.56560 * 5 4 2 36 36 H 1.09006 * 108.15504 * 196.74074 * 6 5 4 37 37 H 1.08991 * 108.16346 * 79.95729 * 6 5 4 38 38 H 1.08994 * 109.47424 * 300.00442 * 10 8 7 39 39 H 1.09001 * 109.47069 * 60.00261 * 10 8 7 40 40 H 1.08001 * 119.93624 * 359.97438 * 12 11 10 41 41 H 1.07997 * 119.96533 * 180.27866 * 13 12 11 42 42 H 1.08001 * 120.03045 * 179.72344 * 14 13 12 43 43 H 0.97003 * 120.00154 * 179.97438 * 20 19 17 44 44 H 1.08005 * 120.03064 * 359.97438 * 25 11 10 45 45 H 1.08999 * 109.84612 * 49.10029 * 26 7 6 46 46 H 1.09000 * 109.84564 * 170.01805 * 26 7 6 47 47 H 1.08995 * 108.52271 * 179.64628 * 27 26 7 48 48 H 1.09000 * 108.52565 * 297.16859 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0237 1.3409 0.0000 4 6 2.0525 -0.7461 1.1933 5 6 3.3330 -0.0764 1.7459 6 6 4.2177 0.4304 0.5799 7 7 4.3331 -0.4486 -0.5477 8 6 5.2947 -1.3922 -0.5848 9 8 5.3830 -2.1306 -1.5430 10 6 6.2601 -1.5300 0.5641 11 6 7.2273 -2.6492 0.2762 12 6 6.9313 -3.9389 0.6794 13 6 7.8140 -4.9694 0.4128 14 6 8.9992 -4.7119 -0.2481 15 6 9.3016 -3.4174 -0.6493 16 8 10.4655 -3.1612 -1.2995 17 6 11.3355 -4.1837 -1.4229 18 1 11.0588 -5.1720 -1.0865 19 6 12.5858 -3.9665 -1.9818 20 7 12.9228 -2.7629 -2.3921 21 14 13.7910 -5.3834 -2.1535 22 1 13.1942 -6.4401 -3.0091 23 1 15.0468 -4.8924 -2.7757 24 1 14.0906 -5.9437 -0.8112 25 6 8.4105 -2.3854 -0.3847 26 6 3.3648 -0.3008 -1.6859 27 6 2.0578 -0.7570 -1.2145 28 1 -0.3634 -1.0271 0.0347 29 1 -0.3633 0.5436 0.8721 30 1 -0.3634 0.4835 -0.9068 31 1 1.7696 1.8537 -0.7795 32 1 1.2887 -0.7592 1.9708 33 1 2.2851 -1.7705 0.9020 34 1 3.8946 -0.7991 2.3380 35 1 3.0520 0.7656 2.3787 36 1 5.2187 0.6166 0.9692 37 1 3.8094 1.3787 0.2309 38 1 6.8107 -0.5978 0.6898 39 1 5.7084 -1.7521 1.4776 40 1 6.0075 -4.1420 1.2005 41 1 7.5781 -5.9761 0.7249 42 1 9.6903 -5.5164 -0.4520 43 1 13.7975 -2.6108 -2.7828 44 1 8.6428 -1.3775 -0.6957 45 1 3.3050 0.7450 -1.9874 46 1 3.6888 -0.9109 -2.5290 47 1 1.3399 -0.6505 -2.0277 48 1 2.1316 -1.8140 -0.9585 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280607495.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:58 Heat of formation + Delta-G solvation = -76.480654 kcal Electronic energy + Delta-G solvation = -29110.218540 eV Core-core repulsion = 25131.300178 eV Total energy + Delta-G solvation = -3978.918362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.83574 -39.21454 -38.46219 -36.40746 -35.46775 -33.42155 -33.08633 -32.25388 -31.72928 -29.56929 -29.02596 -26.96303 -26.23294 -25.17072 -24.00294 -22.50067 -21.54091 -20.68034 -20.41748 -18.75923 -17.55925 -17.03701 -17.01330 -16.88778 -16.44073 -15.56524 -15.07488 -15.00479 -14.68296 -14.56497 -14.32057 -14.19277 -13.84314 -13.55697 -13.53521 -13.30017 -13.25376 -12.67597 -12.46450 -12.39539 -12.27646 -12.20225 -11.78047 -11.73577 -11.48456 -11.43749 -11.41878 -11.17427 -10.98977 -10.74970 -10.68210 -10.56818 -10.52141 -10.39743 -10.01660 -9.42062 -9.25461 -8.75712 -8.59214 -7.95943 -7.12464 -6.36494 -3.95377 2.19111 2.48740 2.86048 3.06854 3.18220 3.20054 3.21909 3.78724 4.03468 4.33287 4.38665 4.45928 4.61042 4.83286 4.90728 4.95410 5.02144 5.06344 5.13948 5.19441 5.23556 5.25720 5.34242 5.37438 5.49791 5.58737 5.61571 5.67973 5.71477 5.77943 5.78979 5.83359 5.86183 5.87219 5.94610 6.02403 6.22073 6.27262 6.43314 6.56538 6.75704 7.01506 7.15649 7.27543 7.37112 7.45776 7.52690 7.57758 7.92745 8.08746 8.40639 9.09199 9.81166 10.81882 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028223 B = 0.002320 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.854776 B =12065.822545 C =12348.903868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.136 3.864 3 O -0.544 6.544 4 C -0.111 4.111 5 C -0.121 4.121 6 C 0.098 3.902 7 N -0.610 5.610 8 C 0.516 3.484 9 O -0.524 6.524 10 C -0.092 4.092 11 C -0.031 4.031 12 C -0.197 4.197 13 C -0.075 4.075 14 C -0.232 4.232 15 C 0.155 3.845 16 O -0.180 6.180 17 C -0.390 4.390 18 H 0.090 0.910 19 C 0.038 3.962 20 N -0.865 5.865 21 Si 0.940 3.060 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.174 4.174 26 C 0.125 3.875 27 C -0.168 4.168 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.369 0.631 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.126 0.874 43 H 0.269 0.731 44 H 0.113 0.887 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.069 0.931 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.370 7.858 7.146 26.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.095 3.905 3 O -0.350 6.350 4 C -0.148 4.148 5 C -0.160 4.160 6 C -0.026 4.026 7 N -0.345 5.345 8 C 0.304 3.696 9 O -0.399 6.399 10 C -0.131 4.131 11 C -0.032 4.032 12 C -0.216 4.216 13 C -0.093 4.093 14 C -0.251 4.251 15 C 0.102 3.898 16 O -0.084 6.084 17 C -0.467 4.467 18 H 0.108 0.892 19 C -0.166 4.166 20 N -0.501 5.501 21 Si 0.765 3.235 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.196 1.196 25 C -0.194 4.194 26 C 0.004 3.996 27 C -0.207 4.207 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.216 0.784 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.143 0.857 43 H 0.079 0.921 44 H 0.131 0.869 45 H 0.090 0.910 46 H 0.112 0.888 47 H 0.087 0.913 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.744 7.566 6.961 25.874 hybrid contribution 0.180 -0.700 -0.528 0.896 sum -23.564 6.866 6.432 25.373 Atomic orbital electron populations 1.22451 0.95216 1.02746 1.02452 1.20431 0.92039 0.82513 0.95492 1.86726 1.76085 1.24202 1.48017 1.21600 0.97844 0.98933 0.96432 1.22368 0.95339 1.00480 0.97777 1.21471 0.99332 0.94939 0.86840 1.48062 1.31828 1.35532 1.19107 1.20791 0.80924 0.79392 0.88457 1.90732 1.71876 1.42558 1.34719 1.20622 0.95888 0.99528 0.97094 1.18704 0.93215 0.93250 0.98008 1.20331 1.00332 0.92588 1.08306 1.20668 0.93720 0.97689 0.97247 1.21160 0.99533 0.97168 1.07240 1.19274 0.87711 0.92567 0.90265 1.83977 1.22823 1.37980 1.63610 1.21265 0.94178 0.88892 1.42337 0.89217 1.25268 0.96852 0.97964 0.96477 1.70033 1.21361 1.20539 1.38146 0.85797 0.79076 0.79738 0.78888 1.19558 1.20341 1.19561 1.19939 0.95060 0.98029 1.06342 1.20714 0.87211 1.01668 0.90046 1.21591 0.98033 1.02080 0.98978 0.91561 0.91680 0.92301 0.78360 0.91879 0.91024 0.92384 0.90761 0.92114 0.87396 0.88432 0.88661 0.88099 0.87554 0.85665 0.92093 0.86902 0.91045 0.88843 0.91271 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 8.52 37.15 0.32 -0.58 16 2 C 0.14 0.89 1.05 -92.29 -0.10 0.79 16 3 O -0.54 -3.28 7.92 -35.23 -0.28 -3.56 16 4 C -0.11 -0.86 5.22 -27.26 -0.14 -1.00 16 5 C -0.12 -0.97 5.98 -24.83 -0.15 -1.12 16 6 C 0.10 0.89 4.69 -4.66 -0.02 0.87 16 7 N -0.61 -7.03 2.56 -175.54 -0.45 -7.48 16 8 C 0.52 8.05 7.69 -10.99 -0.08 7.96 16 9 O -0.52 -10.61 15.51 5.55 0.09 -10.53 16 10 C -0.09 -1.35 4.43 -29.04 -0.13 -1.47 16 11 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 12 C -0.20 -3.72 9.70 -39.53 -0.38 -4.11 16 13 C -0.07 -1.50 10.04 -39.61 -0.40 -1.90 16 14 C -0.23 -5.40 9.17 -39.39 -0.36 -5.76 16 15 C 0.16 4.00 6.65 -39.11 -0.26 3.74 16 16 O -0.18 -5.39 9.76 0.06 0.00 -5.39 16 17 C -0.39 -11.35 9.49 30.89 0.29 -11.06 16 18 H 0.09 2.42 5.20 -52.48 -0.27 2.14 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 20 N -0.87 -26.15 13.67 55.48 0.76 -25.39 16 21 Si 0.94 21.18 29.55 -169.99 -5.02 16.16 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 25 C -0.17 -3.99 9.64 -39.40 -0.38 -4.37 16 26 C 0.12 1.21 5.77 -5.20 -0.03 1.18 16 27 C -0.17 -1.30 4.67 -30.18 -0.14 -1.44 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.25 8.12 -51.93 -0.42 -0.17 16 31 H 0.37 1.14 8.77 46.07 0.40 1.54 16 32 H 0.06 0.44 7.72 -51.93 -0.40 0.04 16 33 H 0.07 0.65 6.83 -51.93 -0.35 0.29 16 34 H 0.06 0.48 7.47 -51.93 -0.39 0.09 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.55 6.47 -51.93 -0.34 0.21 16 37 H 0.11 0.90 5.29 -51.46 -0.27 0.63 16 38 H 0.10 1.27 7.33 -51.93 -0.38 0.89 16 39 H 0.10 1.15 7.39 -51.93 -0.38 0.76 16 40 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 42 H 0.13 2.89 5.64 -52.49 -0.30 2.59 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 44 H 0.11 2.52 8.06 -52.48 -0.42 2.09 16 45 H 0.07 0.54 7.40 -51.93 -0.38 0.15 16 46 H 0.09 1.13 7.13 -51.93 -0.37 0.76 16 47 H 0.07 0.43 7.79 -51.93 -0.40 0.02 16 48 H 0.08 0.73 6.93 -51.93 -0.36 0.37 16 LS Contribution 375.24 15.07 5.65 5.65 Total: -1.00 -35.40 375.24 -8.06 -43.47 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.29 Total: 5.40 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -2.52 Total: -18.32 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.31 Total: -32.87 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.19 Total: -19.48 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.40 -8.06 -43.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280607495.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.014 kcal (2) G-P(sol) polarization free energy of solvation -35.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds