Wall clock time and date at job start Tue Mar 31 2020 17:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42895 * 110.21594 * 2 1 4 4 C 1.50123 * 110.37060 * 122.01688 * 2 1 3 5 5 C 1.54714 * 110.90922 * 216.55850 * 4 2 1 6 6 C 1.54893 * 110.21086 * 321.43641 * 5 4 2 7 7 N 1.43441 * 115.92803 * 318.34185 * 6 5 4 8 8 C 1.34772 * 120.53712 * 271.70117 * 7 6 5 9 9 O 1.21288 * 119.99574 * 179.97438 * 8 7 6 10 10 C 1.50693 * 120.00436 * 359.97438 * 8 7 6 11 11 C 1.50702 * 109.47364 * 180.02562 * 10 8 7 12 12 C 1.38326 * 119.96284 * 269.72601 * 11 10 8 13 13 C 1.38285 * 120.13754 * 179.76753 * 12 11 10 14 14 C 1.38124 * 120.06537 * 0.50256 * 13 12 11 15 15 C 1.38859 * 119.93138 * 359.75660 * 14 13 12 16 16 O 1.35753 * 120.06828 * 180.02562 * 15 14 13 17 17 C 1.34823 * 116.99775 * 354.43634 * 16 15 14 18 18 H 1.08003 * 120.00895 * 5.05867 * 17 16 15 19 19 C 1.38662 * 119.99800 * 185.05982 * 17 16 15 20 20 N 1.31552 * 120.00002 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99829 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47496 * 59.99716 * 21 19 17 23 23 H 1.48503 * 109.47029 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47004 * 299.99252 * 21 19 17 25 25 C 1.38071 * 119.96849 * 90.00186 * 11 10 8 26 26 C 1.50168 * 118.92130 * 91.67391 * 7 6 5 27 27 C 1.46238 * 107.53538 * 289.59035 * 26 7 6 28 28 H 1.09001 * 109.47373 * 181.93297 * 1 2 3 29 29 H 1.09001 * 109.46990 * 301.93463 * 1 2 3 30 30 H 1.09005 * 109.47371 * 61.93306 * 1 2 3 31 31 H 0.96702 * 114.00109 * 298.06775 * 3 2 1 32 32 H 1.09001 * 109.21070 * 337.06061 * 4 2 1 33 33 H 1.09004 * 109.20646 * 96.41546 * 4 2 1 34 34 H 1.09004 * 109.47493 * 201.11014 * 5 4 2 35 35 H 1.09005 * 109.16988 * 81.56560 * 5 4 2 36 36 H 1.09006 * 108.15504 * 196.74074 * 6 5 4 37 37 H 1.08991 * 108.16346 * 79.95729 * 6 5 4 38 38 H 1.08994 * 109.47424 * 300.00442 * 10 8 7 39 39 H 1.09001 * 109.47069 * 60.00261 * 10 8 7 40 40 H 1.08001 * 119.93624 * 359.97438 * 12 11 10 41 41 H 1.07997 * 119.96533 * 180.27866 * 13 12 11 42 42 H 1.08001 * 120.03045 * 179.72344 * 14 13 12 43 43 H 0.97003 * 120.00154 * 179.97438 * 20 19 17 44 44 H 1.08005 * 120.03064 * 359.97438 * 25 11 10 45 45 H 1.08999 * 109.84612 * 49.10029 * 26 7 6 46 46 H 1.09000 * 109.84564 * 170.01805 * 26 7 6 47 47 H 1.08995 * 108.52271 * 179.64628 * 27 26 7 48 48 H 1.09000 * 108.52565 * 297.16859 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0237 1.3409 0.0000 4 6 2.0525 -0.7461 1.1933 5 6 3.3330 -0.0764 1.7459 6 6 4.2177 0.4304 0.5799 7 7 4.3331 -0.4486 -0.5477 8 6 5.2947 -1.3922 -0.5848 9 8 5.3830 -2.1306 -1.5430 10 6 6.2601 -1.5300 0.5641 11 6 7.2273 -2.6492 0.2762 12 6 6.9313 -3.9389 0.6794 13 6 7.8140 -4.9694 0.4128 14 6 8.9992 -4.7119 -0.2481 15 6 9.3016 -3.4174 -0.6493 16 8 10.4655 -3.1612 -1.2995 17 6 11.3355 -4.1837 -1.4229 18 1 11.0588 -5.1720 -1.0865 19 6 12.5858 -3.9665 -1.9818 20 7 12.9228 -2.7629 -2.3921 21 14 13.7910 -5.3834 -2.1535 22 1 13.1942 -6.4401 -3.0091 23 1 15.0468 -4.8924 -2.7757 24 1 14.0906 -5.9437 -0.8112 25 6 8.4105 -2.3854 -0.3847 26 6 3.3648 -0.3008 -1.6859 27 6 2.0578 -0.7570 -1.2145 28 1 -0.3634 -1.0271 0.0347 29 1 -0.3633 0.5436 0.8721 30 1 -0.3634 0.4835 -0.9068 31 1 1.7696 1.8537 -0.7795 32 1 1.2887 -0.7592 1.9708 33 1 2.2851 -1.7705 0.9020 34 1 3.8946 -0.7991 2.3380 35 1 3.0520 0.7656 2.3787 36 1 5.2187 0.6166 0.9692 37 1 3.8094 1.3787 0.2309 38 1 6.8107 -0.5978 0.6898 39 1 5.7084 -1.7521 1.4776 40 1 6.0075 -4.1420 1.2005 41 1 7.5781 -5.9761 0.7249 42 1 9.6903 -5.5164 -0.4520 43 1 13.7975 -2.6108 -2.7828 44 1 8.6428 -1.3775 -0.6957 45 1 3.3050 0.7450 -1.9874 46 1 3.6888 -0.9109 -2.5290 47 1 1.3399 -0.6505 -2.0277 48 1 2.1316 -1.8140 -0.9585 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280607495.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:57 Heat of formation + Delta-G solvation = -100.424407 kcal Electronic energy + Delta-G solvation = -29111.256819 eV Core-core repulsion = 25131.300178 eV Total energy + Delta-G solvation = -3979.956641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.71200 -40.77256 -39.72050 -38.16662 -36.37993 -34.38316 -34.09197 -33.80850 -33.08002 -30.93427 -30.20138 -28.33386 -27.25804 -26.93851 -24.68783 -23.59123 -23.21524 -22.24771 -20.97014 -19.93916 -19.35352 -18.74161 -18.05095 -17.57261 -17.34957 -16.82788 -16.63804 -16.12318 -16.05968 -15.72685 -15.59361 -15.37544 -15.30515 -14.87645 -14.49590 -14.39493 -14.23324 -14.14559 -13.90129 -13.59691 -13.18340 -13.04889 -12.96575 -12.82850 -12.74849 -12.47158 -12.45642 -12.37207 -12.23194 -12.13599 -12.08107 -12.04345 -11.63958 -11.21530 -11.12807 -10.93440 -10.79167 -10.32231 -9.63763 -9.54044 -8.98848 -8.46931 -6.15758 0.51278 0.74574 1.33615 1.45247 1.50574 1.67404 2.07112 2.17988 2.83298 3.16126 3.30973 3.42755 3.69502 3.79320 3.83264 3.91931 4.01915 4.08716 4.18152 4.29215 4.30699 4.38340 4.39246 4.48849 4.57315 4.60093 4.63395 4.66404 4.71993 4.81264 4.92446 4.96799 5.04067 5.08678 5.11073 5.12250 5.16729 5.22837 5.29008 5.29808 5.35837 5.60449 5.63806 5.71571 5.73102 5.74366 6.02404 6.21793 6.56936 6.96196 6.97171 7.26028 7.78725 8.76515 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028223 B = 0.002320 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.854776 B =12065.822545 C =12348.903868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.145 3.855 3 O -0.550 6.550 4 C -0.115 4.115 5 C -0.117 4.117 6 C 0.091 3.909 7 N -0.598 5.598 8 C 0.512 3.488 9 O -0.583 6.583 10 C -0.089 4.089 11 C -0.024 4.024 12 C -0.182 4.182 13 C -0.072 4.072 14 C -0.247 4.247 15 C 0.114 3.886 16 O -0.234 6.234 17 C -0.416 4.416 18 H 0.101 0.899 19 C -0.025 4.025 20 N -0.922 5.922 21 Si 1.021 2.979 22 H -0.259 1.259 23 H -0.270 1.270 24 H -0.255 1.255 25 C -0.193 4.193 26 C 0.121 3.879 27 C -0.162 4.162 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.384 0.616 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.132 0.868 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.120 0.880 43 H 0.273 0.727 44 H 0.104 0.896 45 H 0.098 0.902 46 H 0.064 0.936 47 H 0.088 0.912 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.239 7.717 9.124 29.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.104 3.896 3 O -0.359 6.359 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.032 4.032 7 N -0.331 5.331 8 C 0.301 3.699 9 O -0.463 6.463 10 C -0.128 4.128 11 C -0.025 4.025 12 C -0.200 4.200 13 C -0.090 4.090 14 C -0.266 4.266 15 C 0.064 3.936 16 O -0.141 6.141 17 C -0.492 4.492 18 H 0.118 0.882 19 C -0.222 4.222 20 N -0.561 5.561 21 Si 0.839 3.161 22 H -0.183 1.183 23 H -0.194 1.194 24 H -0.180 1.180 25 C -0.213 4.213 26 C 0.001 3.999 27 C -0.201 4.201 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.234 0.766 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.150 0.850 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.137 0.863 43 H 0.082 0.918 44 H 0.122 0.878 45 H 0.116 0.884 46 H 0.082 0.918 47 H 0.106 0.894 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.701 7.468 8.984 29.145 hybrid contribution 0.719 -0.540 -1.019 1.360 sum -25.982 6.927 7.965 28.045 Atomic orbital electron populations 1.22402 0.93924 1.02879 1.03212 1.20298 0.92820 0.82498 0.93977 1.86655 1.76287 1.23862 1.49101 1.21636 0.98109 0.98250 0.97247 1.22342 0.95150 1.00920 0.97166 1.21727 1.00087 0.94910 0.86508 1.48111 1.30648 1.34131 1.20164 1.20900 0.81614 0.79604 0.87783 1.90718 1.73661 1.45177 1.36759 1.20701 0.95264 0.98594 0.98260 1.19190 0.92344 0.95347 0.95582 1.20925 1.01044 0.91830 1.06237 1.21125 0.92156 1.00082 0.95603 1.21294 1.01103 0.95990 1.08195 1.19850 0.87456 0.94644 0.91690 1.83937 1.24659 1.39073 1.66404 1.21800 0.94910 0.89465 1.42990 0.88221 1.26639 0.98600 1.01302 0.95628 1.70188 1.22277 1.23359 1.40243 0.84628 0.76046 0.75748 0.79630 1.18310 1.19433 1.17952 1.20178 0.96322 0.97260 1.07498 1.20873 0.87569 1.02791 0.88704 1.21517 0.97285 1.00892 1.00360 0.91720 0.91478 0.91058 0.76572 0.90912 0.92599 0.92323 0.89625 0.91803 0.86076 0.86771 0.85006 0.83900 0.83579 0.86257 0.91823 0.87800 0.88352 0.91784 0.89386 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 8.52 71.98 0.61 -0.61 16 2 C 0.14 1.47 1.05 -11.88 -0.01 1.45 16 3 O -0.55 -4.67 7.92 -148.98 -1.18 -5.85 16 4 C -0.11 -1.46 5.22 30.25 0.16 -1.30 16 5 C -0.12 -1.50 5.98 31.83 0.19 -1.31 16 6 C 0.09 1.39 4.69 87.59 0.41 1.80 16 7 N -0.60 -12.80 2.56 -827.66 -2.12 -14.92 16 8 C 0.51 15.51 7.69 87.66 0.67 16.18 16 9 O -0.58 -23.99 15.51 -3.05 -0.05 -24.04 16 10 C -0.09 -2.43 4.43 29.10 0.13 -2.30 16 11 C -0.02 -0.91 4.37 -19.88 -0.09 -0.99 16 12 C -0.18 -6.40 9.70 22.30 0.22 -6.18 16 13 C -0.07 -2.73 10.04 22.25 0.22 -2.51 16 14 C -0.25 -11.75 9.17 22.39 0.21 -11.54 16 15 C 0.11 6.19 6.65 22.58 0.15 6.34 16 16 O -0.23 -15.03 9.76 -22.70 -0.22 -15.25 16 17 C -0.42 -25.52 9.49 67.92 0.64 -24.88 16 18 H 0.10 5.63 5.20 -2.91 -0.02 5.61 16 19 C -0.02 -1.46 5.49 84.84 0.47 -0.99 16 20 N -0.92 -58.79 13.67 21.62 0.30 -58.49 16 21 Si 1.02 44.58 29.55 68.60 2.03 46.60 16 22 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 25 C -0.19 -9.19 9.64 22.39 0.22 -8.97 16 26 C 0.12 2.20 5.77 83.58 0.48 2.68 16 27 C -0.16 -2.20 4.67 28.36 0.13 -2.07 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.36 8.12 -2.38 -0.02 0.34 16 31 H 0.38 0.87 8.77 -73.22 -0.64 0.23 16 32 H 0.07 0.79 7.72 -2.39 -0.02 0.77 16 33 H 0.06 0.90 6.83 -2.38 -0.02 0.88 16 34 H 0.06 0.75 7.47 -2.39 -0.02 0.73 16 35 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.06 0.96 6.47 -2.38 -0.02 0.95 16 37 H 0.12 1.61 5.29 -2.09 -0.01 1.60 16 38 H 0.11 2.76 7.33 -2.39 -0.02 2.75 16 39 H 0.13 2.63 7.39 -2.39 -0.02 2.61 16 40 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 41 H 0.15 4.37 8.06 -2.91 -0.02 4.35 16 42 H 0.12 5.69 5.64 -2.91 -0.02 5.67 16 43 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 44 H 0.10 4.96 8.06 -2.91 -0.02 4.93 16 45 H 0.10 1.25 7.40 -2.39 -0.02 1.23 16 46 H 0.06 1.58 7.13 -2.39 -0.02 1.56 16 47 H 0.09 0.88 7.79 -2.39 -0.02 0.86 16 48 H 0.05 1.00 6.93 -2.39 -0.02 0.98 16 Total: -1.00 -84.32 375.24 3.91 -80.41 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.34 Total: 26.75 kcal Atomic # 6 Polarization: -40.03 SS G_CDS: 4.81 Total: -35.22 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -1.83 Total: -73.41 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -1.45 Total: -45.14 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -84.32 3.91 -80.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280607495.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.011 kcal (2) G-P(sol) polarization free energy of solvation -84.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds