Wall clock time and date at job start Tue Mar 31 2020 18:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47054 * 2 1 4 4 C 1.52998 * 109.47170 * 180.02562 * 3 2 1 5 5 N 1.46501 * 110.45495 * 305.69896 * 4 3 2 6 6 C 1.34780 * 119.99943 * 181.90448 * 5 4 3 7 7 O 1.21281 * 119.99784 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99869 * 180.02562 * 6 5 4 9 9 C 1.50700 * 109.47165 * 180.02562 * 8 6 5 10 10 C 1.38323 * 119.96389 * 269.72791 * 9 8 6 11 11 C 1.38283 * 120.13768 * 179.76656 * 10 9 8 12 12 C 1.38114 * 120.07044 * 0.50425 * 11 10 9 13 13 C 1.38865 * 119.93045 * 359.74568 * 12 11 10 14 14 O 1.35748 * 120.07231 * 179.97438 * 13 12 11 15 15 C 1.34831 * 116.99622 * 354.48321 * 14 13 12 16 16 H 1.08003 * 119.99995 * 5.06110 * 15 14 13 17 17 C 1.38655 * 119.99762 * 185.06419 * 15 14 13 18 18 N 1.31561 * 120.00237 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99826 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47304 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47249 * 119.99860 * 19 17 15 22 22 H 1.48505 * 109.46838 * 239.99410 * 19 17 15 23 23 C 1.38077 * 119.96668 * 89.99013 * 9 8 6 24 24 C 1.54502 * 110.62950 * 183.01422 * 4 3 2 25 25 C 1.54481 * 104.06444 * 241.29655 * 24 4 3 26 26 O 1.44421 * 104.80448 * 336.02162 * 25 24 4 27 27 C 1.44426 * 105.27323 * 40.50693 * 26 25 24 28 28 H 1.08998 * 109.47108 * 300.00203 * 1 2 3 29 29 H 1.09000 * 109.46626 * 60.00145 * 1 2 3 30 30 H 1.09002 * 109.46617 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47108 * 239.99797 * 2 1 3 32 32 H 1.08992 * 109.47222 * 119.99916 * 2 1 3 33 33 H 1.08998 * 109.47329 * 59.99932 * 3 2 1 34 34 H 1.09004 * 109.46685 * 299.99867 * 3 2 1 35 35 H 0.96997 * 120.00001 * 1.90480 * 5 4 3 36 36 H 1.09005 * 109.46628 * 299.99697 * 8 6 5 37 37 H 1.09000 * 109.47206 * 59.99782 * 8 6 5 38 38 H 1.07999 * 119.92844 * 359.97438 * 10 9 8 39 39 H 1.08001 * 119.96347 * 180.25285 * 11 10 9 40 40 H 1.08001 * 120.04151 * 179.77336 * 12 11 10 41 41 H 0.97000 * 119.99930 * 180.02562 * 18 17 15 42 42 H 1.07997 * 120.03491 * 359.96756 * 23 9 8 43 43 H 1.09004 * 110.51129 * 359.94413 * 24 4 3 44 44 H 1.09006 * 110.51307 * 122.64806 * 24 4 3 45 45 H 1.09005 * 110.36908 * 217.18525 * 25 24 4 46 46 H 1.09003 * 110.46266 * 94.90379 * 25 24 4 47 47 H 1.08995 * 110.37198 * 200.65737 * 27 26 25 48 48 H 1.09004 * 110.46128 * 78.37111 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0825 0.6414 1.1137 6 6 5.4111 0.5424 1.3175 7 8 6.1824 1.1161 0.5780 8 6 5.9383 -0.2822 2.4634 9 6 7.4443 -0.2283 2.4701 10 6 8.1724 -1.1709 1.7668 11 6 9.5544 -1.1219 1.7664 12 6 10.2122 -0.1373 2.4773 13 6 9.4842 0.8074 3.1885 14 8 10.1277 1.7762 3.8886 15 6 11.4726 1.6985 3.9465 16 1 11.9945 0.9397 3.3825 17 6 12.1854 2.5929 4.7304 18 7 11.5497 3.5176 5.4172 19 14 14.0487 2.4859 4.8101 20 1 14.5175 1.3679 3.9523 21 1 14.6389 3.7607 4.3288 22 1 14.4710 2.2435 6.2131 23 6 8.0960 0.7588 3.1825 24 6 4.1144 2.8865 0.0754 25 6 4.9197 3.0535 -1.2323 26 8 5.2811 1.7093 -1.6173 27 6 4.1108 0.9079 -1.3453 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.4656 0.1823 1.7049 36 1 5.5567 0.1164 3.4035 37 1 5.6118 -1.3157 2.3478 38 1 7.6605 -1.9447 1.2140 39 1 10.1200 -1.8569 1.2130 40 1 11.2916 -0.1017 2.4796 41 1 12.0485 4.1435 5.9652 42 1 7.5270 1.4922 3.7345 43 1 3.2935 3.6027 0.1125 44 1 4.7648 3.0044 0.9422 45 1 5.8139 3.6506 -1.0536 46 1 4.3031 3.5162 -2.0031 47 1 4.3838 -0.1433 -1.2534 48 1 3.3679 1.0390 -2.1321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287675848.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:15 Heat of formation + Delta-G solvation = -87.853575 kcal Electronic energy + Delta-G solvation = -28999.447354 eV Core-core repulsion = 25020.035825 eV Total energy + Delta-G solvation = -3979.411529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.77496 -39.06590 -38.09721 -36.38706 -36.01755 -33.46774 -32.34294 -31.99020 -30.97676 -29.29663 -29.01742 -26.89492 -26.25309 -25.16470 -23.27924 -21.93223 -21.65364 -21.43399 -20.32572 -19.59051 -17.63459 -17.17501 -16.81382 -16.57638 -15.81731 -15.57760 -15.29353 -15.01501 -14.90899 -14.53898 -14.33883 -14.17081 -13.80155 -13.62084 -13.36823 -13.27900 -13.05904 -12.74791 -12.72671 -12.41984 -12.30974 -11.95948 -11.73280 -11.64508 -11.49302 -11.37830 -11.32192 -11.20399 -10.88379 -10.81332 -10.75776 -10.67752 -10.52693 -10.37245 -9.79773 -9.41602 -9.24688 -8.88690 -8.76546 -7.96003 -7.12000 -6.37098 -3.95720 2.19363 2.49372 2.92423 3.15690 3.18577 3.22708 3.24286 3.93755 4.03198 4.31047 4.38001 4.54446 4.63226 4.77360 4.79041 4.98777 5.03981 5.07961 5.13111 5.17779 5.19669 5.27599 5.33264 5.38740 5.39698 5.44630 5.58145 5.61186 5.66987 5.71563 5.74716 5.77791 5.84740 5.86014 5.90545 6.02970 6.05555 6.27294 6.43265 6.53763 6.75801 6.93113 7.01557 7.16434 7.36860 7.46675 7.52875 7.57268 7.93045 8.08646 8.50693 9.09115 9.81068 10.81498 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019751 B = 0.002521 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.308299 B =11105.217782 C =11427.825218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.115 4.115 4 C 0.147 3.853 5 N -0.732 5.732 6 C 0.503 3.497 7 O -0.483 6.483 8 C -0.094 4.094 9 C -0.030 4.030 10 C -0.194 4.194 11 C -0.075 4.075 12 C -0.231 4.231 13 C 0.155 3.845 14 O -0.181 6.181 15 C -0.388 4.388 16 H 0.092 0.908 17 C 0.037 3.963 18 N -0.866 5.866 19 Si 0.940 3.060 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.277 1.277 23 C -0.174 4.174 24 C -0.155 4.155 25 C 0.056 3.944 26 O -0.344 6.344 27 C 0.045 3.955 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.396 0.604 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.125 0.875 41 H 0.268 0.732 42 H 0.112 0.888 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.049 0.951 47 H 0.086 0.914 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.061 -6.642 -9.858 25.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.153 4.153 4 C 0.060 3.940 5 N -0.388 5.388 6 C 0.288 3.712 7 O -0.354 6.354 8 C -0.134 4.134 9 C -0.031 4.031 10 C -0.213 4.213 11 C -0.093 4.093 12 C -0.250 4.250 13 C 0.102 3.898 14 O -0.085 6.085 15 C -0.465 4.465 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.501 5.501 19 Si 0.765 3.235 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.193 4.193 24 C -0.194 4.194 25 C -0.021 4.021 26 O -0.262 6.262 27 C -0.033 4.033 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.231 0.769 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.143 0.857 41 H 0.078 0.922 42 H 0.130 0.870 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.068 0.932 47 H 0.105 0.895 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.258 -5.892 -10.213 24.309 hybrid contribution 0.433 -0.199 0.443 0.650 sum -20.826 -6.091 -9.770 23.796 Atomic orbital electron populations 1.21774 0.95497 1.01829 1.01902 1.21562 0.96060 0.96320 1.02520 1.21861 0.92049 0.97885 1.03469 1.21642 0.93412 0.91175 0.87806 1.46189 1.07303 1.53288 1.32004 1.20762 0.81777 0.82183 0.86442 1.90876 1.55810 1.43549 1.45128 1.20593 0.94490 1.00620 0.97673 1.18639 0.91931 0.95342 0.97163 1.20331 0.93854 1.01718 1.05393 1.20668 0.94039 0.97152 0.97442 1.21164 1.00509 0.98984 1.04352 1.19276 0.91703 0.88050 0.90804 1.83975 1.21484 1.40960 1.62101 1.21363 0.78537 1.17646 1.28954 0.89111 1.25269 1.00398 0.95404 0.95545 1.70055 1.36024 1.16646 1.27417 0.85661 0.80896 0.78559 0.78386 1.19131 1.20212 1.20222 1.19918 0.91769 1.01365 1.06295 1.23272 1.00201 0.95193 1.00741 1.23196 0.99320 0.85977 0.93656 1.89290 1.33699 1.18053 1.85129 1.23690 0.88637 0.96989 0.94009 0.92638 0.92686 0.92597 0.91574 0.91752 0.90802 0.90218 0.76912 0.88623 0.88756 0.88059 0.87575 0.85695 0.92222 0.87003 0.90653 0.89628 0.89175 0.93241 0.89536 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.16 0.37 -0.34 16 2 C -0.13 -0.68 5.57 -26.73 -0.15 -0.83 16 3 C -0.11 -0.71 4.13 -26.73 -0.11 -0.82 16 4 C 0.15 1.40 0.87 -130.26 -0.11 1.29 16 5 N -0.73 -7.32 4.87 -46.16 -0.22 -7.54 16 6 C 0.50 7.18 6.94 -10.98 -0.08 7.10 16 7 O -0.48 -9.17 12.01 -17.11 -0.21 -9.38 16 8 C -0.09 -1.26 5.83 -29.04 -0.17 -1.43 16 9 C -0.03 -0.56 4.37 -104.65 -0.46 -1.02 16 10 C -0.19 -3.63 9.70 -39.53 -0.38 -4.01 16 11 C -0.07 -1.49 10.04 -39.61 -0.40 -1.89 16 12 C -0.23 -5.37 9.17 -39.39 -0.36 -5.73 16 13 C 0.15 3.96 6.65 -39.10 -0.26 3.70 16 14 O -0.18 -5.40 9.76 0.05 0.00 -5.40 16 15 C -0.39 -11.28 9.49 30.89 0.29 -10.99 16 16 H 0.09 2.46 5.20 -52.48 -0.27 2.18 16 17 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 18 N -0.87 -26.10 13.67 55.48 0.76 -25.35 16 19 Si 0.94 21.21 29.55 -169.99 -5.02 16.19 16 20 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 C -0.17 -3.90 9.65 -39.39 -0.38 -4.28 16 24 C -0.16 -1.74 5.75 -25.17 -0.14 -1.89 16 25 C 0.06 0.71 7.30 37.93 0.28 0.98 16 26 O -0.34 -5.35 9.68 -57.90 -0.56 -5.91 16 27 C 0.05 0.51 5.47 37.93 0.21 0.72 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.38 7.55 -51.93 -0.39 -0.01 16 32 H 0.06 0.32 6.58 -51.93 -0.34 -0.02 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.44 8.01 -51.93 -0.42 0.03 16 35 H 0.40 2.77 6.99 -40.82 -0.29 2.49 16 36 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 37 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 38 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.13 2.90 5.64 -52.49 -0.30 2.60 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 43 H 0.07 0.65 7.74 -51.93 -0.40 0.25 16 44 H 0.09 1.20 6.91 -51.93 -0.36 0.84 16 45 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.09 1.03 8.05 -51.93 -0.42 0.61 16 48 H 0.06 0.53 7.78 -51.93 -0.40 0.13 16 LS Contribution 385.15 15.07 5.80 5.80 Total: -1.00 -35.67 385.15 -8.77 -44.44 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.37 Total: 5.61 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -1.95 Total: -18.47 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.53 Total: -32.89 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.77 Total: -20.68 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.67 -8.77 -44.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287675848.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.418 kcal (2) G-P(sol) polarization free energy of solvation -35.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds