Wall clock time and date at job start Tue Mar 31 2020 18:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47054 * 2 1 4 4 C 1.52998 * 109.47170 * 180.02562 * 3 2 1 5 5 N 1.46501 * 110.45495 * 305.69896 * 4 3 2 6 6 C 1.34780 * 119.99943 * 181.90448 * 5 4 3 7 7 O 1.21281 * 119.99784 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99869 * 180.02562 * 6 5 4 9 9 C 1.50700 * 109.47165 * 180.02562 * 8 6 5 10 10 C 1.38323 * 119.96389 * 269.72791 * 9 8 6 11 11 C 1.38283 * 120.13768 * 179.76656 * 10 9 8 12 12 C 1.38114 * 120.07044 * 0.50425 * 11 10 9 13 13 C 1.38865 * 119.93045 * 359.74568 * 12 11 10 14 14 O 1.35748 * 120.07231 * 179.97438 * 13 12 11 15 15 C 1.34831 * 116.99622 * 354.48321 * 14 13 12 16 16 H 1.08003 * 119.99995 * 5.06110 * 15 14 13 17 17 C 1.38655 * 119.99762 * 185.06419 * 15 14 13 18 18 N 1.31561 * 120.00237 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99826 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47304 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47249 * 119.99860 * 19 17 15 22 22 H 1.48505 * 109.46838 * 239.99410 * 19 17 15 23 23 C 1.38077 * 119.96668 * 89.99013 * 9 8 6 24 24 C 1.54502 * 110.62950 * 183.01422 * 4 3 2 25 25 C 1.54481 * 104.06444 * 241.29655 * 24 4 3 26 26 O 1.44421 * 104.80448 * 336.02162 * 25 24 4 27 27 C 1.44426 * 105.27323 * 40.50693 * 26 25 24 28 28 H 1.08998 * 109.47108 * 300.00203 * 1 2 3 29 29 H 1.09000 * 109.46626 * 60.00145 * 1 2 3 30 30 H 1.09002 * 109.46617 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47108 * 239.99797 * 2 1 3 32 32 H 1.08992 * 109.47222 * 119.99916 * 2 1 3 33 33 H 1.08998 * 109.47329 * 59.99932 * 3 2 1 34 34 H 1.09004 * 109.46685 * 299.99867 * 3 2 1 35 35 H 0.96997 * 120.00001 * 1.90480 * 5 4 3 36 36 H 1.09005 * 109.46628 * 299.99697 * 8 6 5 37 37 H 1.09000 * 109.47206 * 59.99782 * 8 6 5 38 38 H 1.07999 * 119.92844 * 359.97438 * 10 9 8 39 39 H 1.08001 * 119.96347 * 180.25285 * 11 10 9 40 40 H 1.08001 * 120.04151 * 179.77336 * 12 11 10 41 41 H 0.97000 * 119.99930 * 180.02562 * 18 17 15 42 42 H 1.07997 * 120.03491 * 359.96756 * 23 9 8 43 43 H 1.09004 * 110.51129 * 359.94413 * 24 4 3 44 44 H 1.09006 * 110.51307 * 122.64806 * 24 4 3 45 45 H 1.09005 * 110.36908 * 217.18525 * 25 24 4 46 46 H 1.09003 * 110.46266 * 94.90379 * 25 24 4 47 47 H 1.08995 * 110.37198 * 200.65737 * 27 26 25 48 48 H 1.09004 * 110.46128 * 78.37111 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0825 0.6414 1.1137 6 6 5.4111 0.5424 1.3175 7 8 6.1824 1.1161 0.5780 8 6 5.9383 -0.2822 2.4634 9 6 7.4443 -0.2283 2.4701 10 6 8.1724 -1.1709 1.7668 11 6 9.5544 -1.1219 1.7664 12 6 10.2122 -0.1373 2.4773 13 6 9.4842 0.8074 3.1885 14 8 10.1277 1.7762 3.8886 15 6 11.4726 1.6985 3.9465 16 1 11.9945 0.9397 3.3825 17 6 12.1854 2.5929 4.7304 18 7 11.5497 3.5176 5.4172 19 14 14.0487 2.4859 4.8101 20 1 14.5175 1.3679 3.9523 21 1 14.6389 3.7607 4.3288 22 1 14.4710 2.2435 6.2131 23 6 8.0960 0.7588 3.1825 24 6 4.1144 2.8865 0.0754 25 6 4.9197 3.0535 -1.2323 26 8 5.2811 1.7093 -1.6173 27 6 4.1108 0.9079 -1.3453 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.4656 0.1823 1.7049 36 1 5.5567 0.1164 3.4035 37 1 5.6118 -1.3157 2.3478 38 1 7.6605 -1.9447 1.2140 39 1 10.1200 -1.8569 1.2130 40 1 11.2916 -0.1017 2.4796 41 1 12.0485 4.1435 5.9652 42 1 7.5270 1.4922 3.7345 43 1 3.2935 3.6027 0.1125 44 1 4.7648 3.0044 0.9422 45 1 5.8139 3.6506 -1.0536 46 1 4.3031 3.5162 -2.0031 47 1 4.3838 -0.1433 -1.2534 48 1 3.3679 1.0390 -2.1321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287675848.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:14 Heat of formation + Delta-G solvation = -111.303001 kcal Electronic energy + Delta-G solvation = -29000.464197 eV Core-core repulsion = 25020.035825 eV Total energy + Delta-G solvation = -3980.428372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.74462 -40.76205 -39.39184 -38.07089 -36.83128 -34.34809 -34.24312 -33.43511 -32.00050 -30.85861 -30.05224 -28.29085 -27.22483 -26.89994 -24.11323 -23.38686 -23.03613 -22.25427 -21.69153 -20.50100 -19.49792 -18.80774 -18.07083 -17.57480 -16.80427 -16.68850 -16.60138 -16.38676 -16.12114 -15.88286 -15.55823 -15.53170 -15.40740 -14.81417 -14.73975 -14.34638 -14.11213 -13.96188 -13.81651 -13.60435 -13.47476 -13.20329 -12.97401 -12.72388 -12.55768 -12.50245 -12.45600 -12.35524 -12.21451 -12.16224 -12.08592 -11.90006 -11.49388 -11.37086 -11.20351 -10.83422 -10.78798 -10.58618 -9.83955 -9.61562 -8.96905 -8.47812 -6.16155 0.53783 0.76631 1.32920 1.41901 1.51876 1.83256 2.16836 2.25487 2.85278 3.10004 3.18679 3.45074 3.56117 3.73041 3.83405 3.91645 4.08258 4.10999 4.18966 4.19248 4.28761 4.32084 4.40376 4.46206 4.50846 4.60161 4.65958 4.69730 4.73911 4.76474 4.81053 4.82535 4.91969 4.96016 5.02995 5.08285 5.13177 5.14716 5.31571 5.32330 5.37840 5.51858 5.65345 5.67214 5.73352 5.76802 6.01838 6.02763 6.24531 6.70053 6.96921 7.49565 7.78924 8.76131 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019751 B = 0.002521 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.308299 B =11105.217782 C =11427.825218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.106 4.106 4 C 0.150 3.850 5 N -0.712 5.712 6 C 0.503 3.497 7 O -0.538 6.538 8 C -0.092 4.092 9 C -0.021 4.021 10 C -0.179 4.179 11 C -0.075 4.075 12 C -0.248 4.248 13 C 0.112 3.888 14 O -0.235 6.235 15 C -0.413 4.413 16 H 0.099 0.901 17 C -0.025 4.025 18 N -0.922 5.922 19 Si 1.020 2.980 20 H -0.253 1.253 21 H -0.268 1.268 22 H -0.265 1.265 23 C -0.191 4.191 24 C -0.154 4.154 25 C 0.051 3.949 26 O -0.386 6.386 27 C 0.041 3.959 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.414 0.586 36 H 0.116 0.884 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.116 0.884 41 H 0.272 0.728 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.050 0.950 45 H 0.061 0.939 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.604 -9.147 -11.102 28.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.143 4.143 4 C 0.063 3.937 5 N -0.367 5.367 6 C 0.289 3.711 7 O -0.413 6.413 8 C -0.132 4.132 9 C -0.021 4.021 10 C -0.198 4.198 11 C -0.092 4.092 12 C -0.267 4.267 13 C 0.062 3.938 14 O -0.142 6.142 15 C -0.489 4.489 16 H 0.116 0.884 17 C -0.222 4.222 18 N -0.561 5.561 19 Si 0.839 3.161 20 H -0.176 1.176 21 H -0.193 1.193 22 H -0.190 1.190 23 C -0.211 4.211 24 C -0.192 4.192 25 C -0.026 4.026 26 O -0.305 6.305 27 C -0.036 4.036 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.253 0.747 36 H 0.134 0.866 37 H 0.156 0.844 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.134 0.866 41 H 0.081 0.919 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.890 -8.454 -11.466 27.815 hybrid contribution 0.956 0.413 0.665 1.236 sum -22.935 -8.041 -10.800 26.595 Atomic orbital electron populations 1.21755 0.94847 1.02073 1.02189 1.21555 0.96551 0.95542 1.02674 1.21848 0.88861 0.98937 1.04680 1.21737 0.95535 0.89656 0.86730 1.45982 1.06197 1.52464 1.32104 1.20857 0.82782 0.81546 0.85903 1.90886 1.57417 1.45872 1.47160 1.20703 0.90566 1.03391 0.98523 1.19177 0.95130 0.93229 0.94607 1.20936 0.93543 1.01713 1.03588 1.21111 0.95163 0.96534 0.96435 1.21270 1.00277 0.99877 1.05299 1.19878 0.93167 0.88810 0.91927 1.83933 1.21971 1.43597 1.64688 1.21856 0.78982 1.18389 1.29684 0.88367 1.26617 1.06274 0.94593 0.94708 1.70198 1.38521 1.18205 1.29184 0.84515 0.73349 0.79149 0.79062 1.17611 1.19339 1.18972 1.20185 0.90792 1.02640 1.07440 1.23256 1.00258 0.97308 0.98399 1.23279 0.98825 0.85107 0.95410 1.89232 1.36241 1.19452 1.85581 1.23881 0.88037 0.96083 0.95640 0.92322 0.92475 0.92427 0.91869 0.91219 0.89750 0.88915 0.74721 0.86565 0.84369 0.83794 0.83943 0.86625 0.91851 0.87761 0.87723 0.93134 0.92061 0.90349 0.90328 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 71.98 0.71 -0.16 16 2 C -0.13 -0.86 5.57 30.60 0.17 -0.69 16 3 C -0.11 -0.91 4.13 30.59 0.13 -0.78 16 4 C 0.15 2.51 0.87 4.62 0.00 2.52 16 5 N -0.71 -12.28 4.87 -418.34 -2.04 -14.32 16 6 C 0.50 13.44 6.94 87.66 0.61 14.05 16 7 O -0.54 -20.47 12.01 18.64 0.22 -20.25 16 8 C -0.09 -2.21 5.83 29.10 0.17 -2.04 16 9 C -0.02 -0.75 4.37 -19.88 -0.09 -0.84 16 10 C -0.18 -6.18 9.70 22.30 0.22 -5.97 16 11 C -0.07 -2.86 10.04 22.25 0.22 -2.63 16 12 C -0.25 -11.89 9.17 22.39 0.21 -11.69 16 13 C 0.11 6.08 6.65 22.58 0.15 6.23 16 14 O -0.23 -15.08 9.76 -22.73 -0.22 -15.30 16 15 C -0.41 -25.46 9.49 67.92 0.64 -24.82 16 16 H 0.10 5.62 5.20 -2.91 -0.02 5.61 16 17 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 18 N -0.92 -58.81 13.67 21.61 0.30 -58.51 16 19 Si 1.02 44.89 29.55 68.60 2.03 46.92 16 20 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 23 C -0.19 -8.88 9.65 22.39 0.22 -8.67 16 24 C -0.15 -3.30 5.75 31.61 0.18 -3.12 16 25 C 0.05 1.29 7.30 72.49 0.53 1.82 16 26 O -0.39 -11.99 9.68 -127.31 -1.23 -13.22 16 27 C 0.04 0.86 5.47 72.48 0.40 1.25 16 28 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.06 0.50 7.55 -2.39 -0.02 0.48 16 32 H 0.07 0.40 6.58 -2.39 -0.02 0.39 16 33 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.09 0.63 8.01 -2.38 -0.02 0.61 16 35 H 0.41 4.16 6.99 -92.71 -0.65 3.51 16 36 H 0.12 2.36 8.08 -2.38 -0.02 2.34 16 37 H 0.14 2.14 8.08 -2.39 -0.02 2.12 16 38 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 39 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 40 H 0.12 5.62 5.64 -2.91 -0.02 5.60 16 41 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 42 H 0.10 4.84 8.06 -2.91 -0.02 4.82 16 43 H 0.10 1.57 7.74 -2.39 -0.02 1.55 16 44 H 0.05 1.45 6.91 -2.38 -0.02 1.43 16 45 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 46 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 47 H 0.08 1.71 8.05 -2.39 -0.02 1.69 16 48 H 0.08 1.27 7.78 -2.39 -0.02 1.26 16 Total: -1.00 -86.76 385.15 4.31 -82.45 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.32 Total: 28.79 kcal Atomic # 6 Polarization: -41.49 SS G_CDS: 4.93 Total: -36.55 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: -1.74 Total: -72.83 kcal Atomic # 8 Polarization: -47.54 SS G_CDS: -1.23 Total: -48.77 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -86.76 4.31 -82.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287675848.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.858 kcal (2) G-P(sol) polarization free energy of solvation -86.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds